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Search Results (330)

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15 pages, 827 KiB  
Review
Biomarkers of Importance in Monitoring Heart Condition After Acute Myocardial Infarction
by Aneta Aleksova, Alessandra Lucia Fluca, Antonio Paolo Beltrami, Elena Dozio, Gianfranco Sinagra, Maria Marketou and Milijana Janjusevic
J. Clin. Med. 2025, 14(1), 129; https://doi.org/10.3390/jcm14010129 - 29 Dec 2024
Viewed by 327
Abstract
Despite notable advancements in cardiovascular medicine, morbidity and mortality rates associated with myocardial infarction (MI) remain high. The unfavourable prognosis and absence of robust post-MI protocols necessitate further intervention. In this comprehensive review, we will focus on well-established and novel biomarkers that can [...] Read more.
Despite notable advancements in cardiovascular medicine, morbidity and mortality rates associated with myocardial infarction (MI) remain high. The unfavourable prognosis and absence of robust post-MI protocols necessitate further intervention. In this comprehensive review, we will focus on well-established and novel biomarkers that can provide insight into the processes that occur after an ischemic event. More precisely, during the follow-up, it is of particular importance to monitor biomarkers that indicate an increase in myocardial stretch and stress, damage and death of cardiomyocytes, remodelling of the extracellular matrix, oxidative stress, and inflammation. This enables the identification of abnormalities in a timely manner, as well as the capacity to respond promptly to any changes. Therefore, we would like to highlight the importance of well-known markers, such as natriuretic peptides, high-sensitivity troponins, soluble suppression of tumorigenicity 2, galactin-3, C-reactive protein, and interleukins in post-MI settings, as well as biomarkers such as adrenomedullin, growth differentiation factor-15, insulin-like growth factor binding protein 7, amyloid beta, vitamin D, trimethylamine N-oxide, and advanced glycation end-products that recently emerged in the cardiovascular filed. The implementation of novel post-MI protocols, which encompass the monitoring of the aforementioned biomarkers deemed pertinent, in conjunction with adherence to established cardiac rehabilitation programmes, along with the already well-established therapeutic strategies and control of cardiovascular risk factors, has the potential to markedly enhance patient outcomes and reduce the elevated level of morbidity and mortality. Full article
(This article belongs to the Section Cardiology)
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<p>Overview of emerging cardiovascular biomarkers. Vitamin D deficiency, Klotho downregulation, heightened FGF-23 levels, beta-amyloid, and TMAO accumulation lead to elevated levels of inflammation, oxidative stress, plaque formation, and destabilisation.</p>
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<p>Endogenous production and exogenous sources of AGEs. On the one hand, the accumulation of AGEs leads to crosslinks with proteins contributing to tissue stiffening. On the other hand, AGEs enhance inflammation and oxidative stress after binding to RAGE. AGEs, advanced glycation end products; RAGE, receptors for advanced glycation end products.</p>
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14 pages, 2426 KiB  
Article
Identifying Hub Genes and miRNAs Associated with Alzheimer’s Disease: A Bioinformatics Pathway to Novel Therapeutic Strategies
by Elisa Gascón, Ana Cristina Calvo, Nora Molina, Pilar Zaragoza and Rosario Osta
Biomolecules 2024, 14(12), 1641; https://doi.org/10.3390/biom14121641 - 20 Dec 2024
Viewed by 489
Abstract
Alzheimer’s disease (AD) is a neurodegenerative disorder that mainly affects the elderly population. It is characterized by cognitive impairment and dementia due to abnormal levels of amyloid beta peptide (Aβ) and axonal Tau protein in the brain. However, the complex underlying mechanisms affecting [...] Read more.
Alzheimer’s disease (AD) is a neurodegenerative disorder that mainly affects the elderly population. It is characterized by cognitive impairment and dementia due to abnormal levels of amyloid beta peptide (Aβ) and axonal Tau protein in the brain. However, the complex underlying mechanisms affecting this disease are not yet known, and there is a lack of standardized biomarkers and therapeutic targets. Therefore, in this study, by means of bioinformatics analysis, AD-affected brain tissue was analyzed using the GSE138260 dataset, identifying 612 differentially expressed genes (DEGs). Functional analysis revealed 388 upregulated DEGs associated with sensory perception and 224 downregulated DEGs linked to the regulation and modulation of synaptic processes. Protein–protein interaction network analysis identified 20 hub genes. Furthermore, miRNA target gene networks revealed 1767 miRNAs linked to hub genes, among which hsa-mir-106a-5p, hsa-mir-17-5p, hsa-mir-26a-5p, hsa-mir-27a-3p and hsa-mir-34a-5p were the most relevant. This study presents novel biomarkers and therapeutic targets for AD by analyzing the information obtained with a comprehensive literature review, providing new potential targets to study their role in AD. Full article
(This article belongs to the Special Issue Pathogenesis and Neuropathology of Alzheimer's Disease)
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<p>Volcano plot of differentially expressed genes (DEG) of GSE138260 dataset (LOAD’s and healthy control samples). Red dots represent upregulated genes according to <span class="html-italic">p</span>-value &lt; 0.05 and |logFC| &gt; 0. Blue dots represent downregulated genes according to <span class="html-italic">p</span>-values &lt; 0.05 and |logFC| &lt; 0.</p>
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<p>Analysis of differentially expressed gene (DEG) networks. (<b>a</b>) MCODE-clustered subnetwork of upregulated DEGs. (<b>b</b>) MCODE-clustered subnetwork of downregulated DEGs.</p>
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<p>Enrichment analysis of MCODE-clustered subnetwork of upregulated DEGs by Metascape.</p>
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<p>Enrichment analysis of MCODE-clustered subnetwork of downregulated DEGs by Metascape.</p>
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<p>Hub genes identified by cytoHubba. (<b>a</b>) Hub genes of the PPI network of upregulated DEGs. (<b>b</b>) Hub genes of the PPI network of downregulated DEGs. The descending color from red to yellow represents decreasing interaction intensity between genes.</p>
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<p>High centrality filtered network of miRNAs predicted from hub genes (mRNA). The blue diamond represents the miRNAs, and the red circle represents the mRNA. The dashed lines represent the relationships between them.</p>
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28 pages, 1384 KiB  
Review
Pathology and Treatments of Alzheimer’s Disease Based on Considering Changes in Brain Energy Metabolism Due to Type 2 Diabetes
by Hidekatsu Yanai, Hiroki Adachi, Mariko Hakoshima and Hisayuki Katsuyama
Molecules 2024, 29(24), 5936; https://doi.org/10.3390/molecules29245936 - 16 Dec 2024
Viewed by 532
Abstract
Alzheimer’s disease (AD) is a progressive neurodegenerative disorder with cognitive dysfunction, memory decline, and behavioral disturbance, and it is pathologically characterized by the accumulation of amyloid plaques and neurofibrillary tangles in the brain. Although various hypotheses have been proposed to explain the pathogenesis [...] Read more.
Alzheimer’s disease (AD) is a progressive neurodegenerative disorder with cognitive dysfunction, memory decline, and behavioral disturbance, and it is pathologically characterized by the accumulation of amyloid plaques and neurofibrillary tangles in the brain. Although various hypotheses have been proposed to explain the pathogenesis of AD, including the amyloid beta hypothesis, oxidative stress hypothesis, and abnormal phosphorylation of tau proteins, the exact pathogenic mechanisms underlying AD remain largely undefined. Furthermore, effective curative treatments are very limited. Epidemiologic studies provide convincing evidence for a significant association between type 2 diabetes and AD. Here, we showed energy metabolism using glucose, lactate, ketone bodies, and lipids as energy substrates in a normal brain, and changes in such energy metabolism due to type 2 diabetes. We also showed the influences of such altered energy metabolism due to type 2 diabetes on the pathology of AD. Furthermore, we comprehensively searched for risk factors related with type 2 diabetes for AD and showed possible therapeutic interventions based on considering risk factors and altered brain energy metabolism due to type 2 diabetes for the development of AD. Full article
(This article belongs to the Special Issue Chemical Biology in Asia)
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<p>Glucose transporters, insulin receptor, insulin receptor substrate, and monocarboxylate transporters in normal brain. Red up and down arrows indicate increase and decrease in phenomenon, substances, and expression of molecules, respectively. Black arrows indicate the flow of substances. BBB, blood–brain barrier; G, glucose; GLUT, glucose transporter; Gly, glycogen; IR, insulin receptor; IRS, insulin receptor substrate; L, lactate; MCT, monocarboxylate transporter.</p>
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<p>Lipid metabolism in normal brain. C, cholesterol; Ce, ceramide; E, apo E; FA, fatty acid; FABP, FA binding protein; FATP, FA transport proteins; GLUT, glucose transporter; K, ketone body; L, lactate; LP, lipoprotein-like particle; LPL, lipoprotein lipase; MCT, monocarboxylate transporter; P, phospholipid; S, sphingolipid; SR, scavenger receptor.</p>
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<p>Risk factors related with type 2 diabetes for the development of AD. Aβ, amyloid beta; AGEs, advanced glycation end products; APP, amyloid precursor protein; GSK-3, glycogen synthase kinase-3; HDL-C, high-density lipoprotein cholesterol; IAPP, islet amyloid polypeptide; IGF, insulin-like growth factor; LDL-C, low-density lipoprotein cholesterol; PI3K, phosphatidyl-inositide 3-kinases; RAGE, receptor for AGEs; TG, triglyceride.</p>
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<p>Effects of changes in energy metabolism in brain due to type 2 diabetes on the development of AD. AO, antioxidant; E, apo E; FA, fatty acid; G, glucose; K, ketone body; L, lactate; LP, lipoprotein-like particle; LPL, lipoprotein lipase. Upward and downward arrows indicate an increase and decrease in expression, activity, and phenomenon, respectively.</p>
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16 pages, 2198 KiB  
Article
Inhibitory Effects of Gliadin Hydrolysates on BACE1 Expression and APP Processing to Prevent Aβ Aggregation
by Chin-Yu Lin, Cheng-Hong Hsieh, Pei-Yu Lai, Ching-Wei Huang, Yung-Hui Chung, Shang-Ming Huang and Kuo-Chiang Hsu
Int. J. Mol. Sci. 2024, 25(23), 13212; https://doi.org/10.3390/ijms252313212 - 9 Dec 2024
Viewed by 596
Abstract
Alzheimer’s disease (AD), a leading neurodegenerative disorder, is closely associated with the accumulation of amyloid-beta (Aβ) peptides in the brain. The enzyme β-secretase (BACE1), pivotal in Aβ production, represents a promising therapeutic target for AD. While bioactive peptides derived from food protein hydrolysates [...] Read more.
Alzheimer’s disease (AD), a leading neurodegenerative disorder, is closely associated with the accumulation of amyloid-beta (Aβ) peptides in the brain. The enzyme β-secretase (BACE1), pivotal in Aβ production, represents a promising therapeutic target for AD. While bioactive peptides derived from food protein hydrolysates have neuroprotective properties, their inhibitory effects on BACE1 remain largely unexplored. In this study, we evaluated the inhibitory potential of protein hydrolysates from gliadin, whey, and casein proteins prepared using bromelain, papain, and thermolysin. Through in vitro and cellular assays, bromelain-hydrolyzed gliadin (G-Bro) emerged as the most potent BACE1 inhibitor, with an IC50 of 0.408 mg/mL. G-Bro significantly reduced BACE1 expression and amyloid precursor protein (APP) processing in N2a/PS/APP cell cultures, suggesting its potential to attenuate Aβ aggregation. The unique peptide profile of G-Bro likely contributes to its inhibitory effect, with proline residues disrupting β-sheets, lysine residues introducing positive charges that hinder aggregation, hydrophobic residues stabilizing binding interactions, and glutamine residues enhancing solubility and stability. These findings highlight gliadin hydrolysates, particularly G-Bro, as potential natural BACE1 inhibitors with applications in dietary interventions for AD prevention. However, further studies are warranted to elucidate specific peptide interactions and their bioactivity in neural pathways to better understand their therapeutic potential. Full article
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<p>Degree of hydrolysis of proteins hydrolyzed by (<b>a</b>) papain, (<b>b</b>) bromelain, and (<b>c</b>) thermolysin.</p>
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<p>Effect of G-Bro on the viability of N2a/PS/APP cells. Data are expressed as mean ± SD of three independent experiments. Statistical analyses were performed using one-way ANOVA test. Non-treated cells were considered as control. ** <span class="html-italic">p</span> &lt; 0.01 vs. control.</p>
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<p>Effect of G-Bro on BACE1 expression in N2a/PS/APP cells. Data are expressed as mean ± SD of three independent experiments. Statistical analyses were performed using one-way ANOVA test. Band intensity was evaluated with Image J Version 1.54. Non-treated cells were considered as control. * <span class="html-italic">p</span> &lt; 0.05 and ** <span class="html-italic">p</span> &lt; 0.01 vs. control.</p>
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<p>Effect of G-Bro on sAPP production in N2a/PS/APP cells. Data are expressed as mean ± SD of three independent experiments. Statistical analyses were performed using one-way ANOVA test. Non-treated cells were considered as control. * <span class="html-italic">p</span> &lt; 0.05 vs. control.</p>
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<p>Effect of G-Bro on Aβ aggregate formation in N2a/PS/APP cells. Data are expressed as mean ± SD of three independent experiments. Statistical analyses were performed using one-way ANOVA test. Non-treated cells were considered as control. * <span class="html-italic">p</span> &lt; 0.05 and ** <span class="html-italic">p</span> &lt; 0.01 vs. control.</p>
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<p>The overall framework of the study.</p>
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17 pages, 1597 KiB  
Article
Chemical Characterization and Assessment of the Neuroprotective Potential of Euphrasia officinalis
by Antonis Ververis, Sotiris Kyriakou, Hariklia Paraskeva, Mihalis I. Panayiotidis, Michael Plioukas and Kyproula Christodoulou
Int. J. Mol. Sci. 2024, 25(23), 12902; https://doi.org/10.3390/ijms252312902 - 30 Nov 2024
Viewed by 526
Abstract
Euphrasia officinalis L., commonly known as eyebright, is a medicinal plant used in folk medicine for eye disorders and memory loss. Due to its abundance of compounds with proven neuroprotective properties, there has been growing interest in exploring eyebright’s potential health benefits, particularly [...] Read more.
Euphrasia officinalis L., commonly known as eyebright, is a medicinal plant used in folk medicine for eye disorders and memory loss. Due to its abundance of compounds with proven neuroprotective properties, there has been growing interest in exploring eyebright’s potential health benefits, particularly for preventing or treating neurodegenerative diseases like Alzheimer’s disease. Here, seven distinct extracts were generated using solvents of different polarities, consecutively, from plants grown in Greece. The extracts were chemically characterized and assessed for their antioxidant, anticholinesterase, and anti-neurotoxic potentials. Our findings demonstrated eyebright’s notable antioxidant capacity with five extracts exhibiting significant anti-neurotoxic properties by enhancing cell viability by 17.5 to 22.6% in human neuroblastoma cells exposed to neurotoxic amyloid-beta peptides. The ethyl acetate and butanolic extracts were the most effective across all assays, likely due to their high concentrations of active compounds. Therefore, eyebright may be harnessed for developing functional foods, supplements, and pharmaceuticals with potential benefits against Alzheimer’s disease. This study marks the first identification of neuroprotective properties in a Euphrasia species, highlighting its broader therapeutic potential and paving the way for further research. Full article
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<p>Graphical representation of the extraction process used to produce seven distinct EO extracts.</p>
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<p>The chemical structures of the major compounds identified in both EOEA and EOB extracts.</p>
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<p>The antioxidant potency of EO fractions was assessed using the DCFDA assay in SH-SY5Y cells incubated with H<sub>2</sub>O<sub>2</sub>. Every group was treated with 50 μΜ H<sub>2</sub>O<sub>2</sub> except untreated cells. The error bars show the SEM (standard error of the mean) of six independent tests. ** points to <span class="html-italic">p</span> &lt; 0.01 and *** to <span class="html-italic">p</span> &lt; 0.001 statistical importance, in comparison to control cells.</p>
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<p>The maximum non-toxic concentration of ΕO extracts on SH-SY5Y cells was estimated using the MTT assay. Error bars depict the SEM of four independent tests. * indicates statistical significance at <span class="html-italic">p</span> &lt; 0.05, and *** at <span class="html-italic">p</span> &lt; 0.001, when compared to control untreated cells.</p>
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<p>The neuroprotective ability of the EO extracts against Aβ toxicity in SH-SY5Y cells was estimated using the MTT assay. Error bars depict the SEM of five independent tests. * indicates statistical importance at <span class="html-italic">p</span> &lt; 0.05, and ** points to <span class="html-italic">p</span> &lt; 0.01, when compared with cells treated only with 30 μΜ Aβ<sub>25-35</sub> (Control).</p>
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12 pages, 2064 KiB  
Article
Oxidative Stress Triggers a Pivotal Peptide Linked to Alzheimer’s Disease
by Nikki Evans, Kashif Mahfooz, Sara Garcia-Rates and Susan Greenfield
Int. J. Mol. Sci. 2024, 25(22), 12413; https://doi.org/10.3390/ijms252212413 - 19 Nov 2024
Cited by 1 | Viewed by 832
Abstract
An aberrant recapitulation of a developmental mechanism driven by a 14 mer peptide (‘T14’) derived from acetylcholinesterase (AChE) has been implicated in Alzheimer’s disease. T14 was suggested as an upstream driver of neurodegeneration due to its ability to stimulate the production of phosphorylated [...] Read more.
An aberrant recapitulation of a developmental mechanism driven by a 14 mer peptide (‘T14’) derived from acetylcholinesterase (AChE) has been implicated in Alzheimer’s disease. T14 was suggested as an upstream driver of neurodegeneration due to its ability to stimulate the production of phosphorylated tau and amyloid beta. The activation of this mechanism in adulthood is thought to be brought upon by insult to the primarily vulnerable subcortical nuclei. Here, we show that oxidative stress, induced by high glucose and confirmed by an analysis of antioxidant enzyme mRNA expression, increased the levels of T14 peptide in PC12 cells. This increase in T14 corresponded with an increase in the mRNA expression of AChE and a decrease in the cell viability. The increase in T14 could be blocked by the cyclic form of T14, NBP14, which prevented any cytotoxic effects. These observations suggest that oxidative stress can directly trigger the inappropriate activation of T14 in the adult brain through the upregulation of Ache mRNA. Full article
(This article belongs to the Section Molecular Neurobiology)
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Graphical abstract
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<p>The cell viability was reduced with 150 mM glucose. The PC12 cells were treated with 50 mM glucose, 75 mM glucose, 100 mM glucose, and 150 mM glucose for 24 h before the cell viability was determined. The bars represent the mean number of live cells expressed as a percentage relative to the control. All bars are presented as the mean ± SEM, where n = 3. Student’s <span class="html-italic">t</span>-test. ** <span class="html-italic">p</span> &lt; 0.01. ns: not significant.</p>
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<p>High glucose increased the expressions of <span class="html-italic">Cat</span>, <span class="html-italic">Sod2</span>, and <span class="html-italic">Gs</span>. Relative mRNA expression of the antioxidant enzymes: <span class="html-italic">Cat</span>, <span class="html-italic">Sod2</span>, and <span class="html-italic">Gs</span> in PC12 with 150 mM glucose treatment, normalised to the <span class="html-italic">Gapdh</span> mRNA expression. All bars are presented as the mean ± SEM, where n = 3–4. Student’s <span class="html-italic">t</span>-test. * <span class="html-italic">p</span> &lt; 0.05. ** <span class="html-italic">p</span> &lt; 0.01. <span class="html-italic">Cat</span>, catalase; <span class="html-italic">Sod</span>, superoxide dismutase; <span class="html-italic">Gs</span>, glutathione synthase.</p>
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<p>There was a significant increase in the <span class="html-italic">Ache</span> mRNA expression and T14 levels with high glucose. (<b>A</b>) Relative AChE mRNA expression, normalised to the <span class="html-italic">Gapdh</span> mRNA expression. (<b>Bi</b>) Representative Western blot of the high glucose (150 mM)-treated PC12 for vinculin (117 kDa), T14 (55 kDa), and GAPDH (37 kDa). C represents the control samples and G represents the high-glucose samples. (<b>Bii</b>) Relative T14 expression. The T14 expression was normalised to vinculin and GAPDH expression and expressed relative to the control. All bars represent the mean ± SEM, where n = 3–6. Student’s <span class="html-italic">t</span>-test. * <span class="html-italic">p</span> &lt; 0.05.</p>
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<p>Co-treatment with NBP14 prevented the increase in T14 levels and reduction in cell viability seen with high glucose. (<b>Ai</b>) Representative Western blot of the high glucose (150 mM)-treated and high glucose (150 mM) + NBP14 (15 µM)-treated PC12 for vinculin (117 kDa), T14 (55 kDa), and GAPDH (37 kDa). C represents control samples, G represents high-glucose samples, and N represents high glucose + NBP14 samples. (<b>Aii</b>) Relative T14 expression normalised to vinculin and GAPDH expression and expressed relative to the control. (<b>B</b>) The cell viability of the PC12 cells treated with high glucose and high glucose + NBP14 for 24 h. The bars represent the mean number of live cells expressed as a percentage relative to the control. All bars represent the mean ± SEM, where n = 3. One-way ANOVA followed by Dunnett’s post hoc test. * <span class="html-italic">p</span> &lt; 0.05. ** <span class="html-italic">p</span> &lt; 0.01. ns: not significant.</p>
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<p>Co-treatment with NBP14 (15µM) attenuated the increase in <span class="html-italic">Sod2</span> and <span class="html-italic">Cat</span> mRNA expression with high glucose (150 mM) but had no effect on <span class="html-italic">Gs</span> mRNA expression. (<b>A</b>) Relative <span class="html-italic">Cat</span> mRNA expression. (<b>B</b>) Relative <span class="html-italic">Sod2</span> mRNA expression. (<b>C</b>) Relative <span class="html-italic">Gs</span> mRNA expression. All mRNA expressions were normalised to the <span class="html-italic">Gapdh</span> expression. All bars represent the mean ± SEM, where n = 3–4. One-way ANOVA followed by Dunnett’s post hoc test. * <span class="html-italic">p</span> &lt; 0.05. ** <span class="html-italic">p</span> &lt; 0.01. ns: not significant.</p>
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<p>Proposed diagram of high-glucose-induced oxidative stress leading to elevated T14 levels and its downstream effects. (1) Glucose uptake occurs through GLUT transporters, which, for neuronal cells, are the GLUT1 and GLUT3 transporters [<a href="#B31-ijms-25-12413" class="html-bibr">31</a>]. (2) Once inside the cell, glucose activates increased mitochondrial electron transport chain activity [<a href="#B7-ijms-25-12413" class="html-bibr">7</a>], (3) generating ROS and contributing to the oxidative stress. (4) Elevated ROS activates the increased transcription of antioxidant enzymes and AChE. (5) The upregulated mRNA is transported outside the nucleus, where it is translated into protein at the endoplasmic reticulum. (6) Increased levels of produced AChE protein are released into the extracellular space, (7) where it is cleaved by proteases into T14 [<a href="#B32-ijms-25-12413" class="html-bibr">32</a>]. (8) T14 binds to the α7 nicotinic acetylcholine receptor [<a href="#B11-ijms-25-12413" class="html-bibr">11</a>,<a href="#B12-ijms-25-12413" class="html-bibr">12</a>], which (9) activates the mitochondria [<a href="#B14-ijms-25-12413" class="html-bibr">14</a>] downstream, further generating more ROS and contributing to cell death. (10) At the same time, AChE release from the reticulum is also stimulated [<a href="#B13-ijms-25-12413" class="html-bibr">13</a>], which is cleaved into T14, exacerbating the process. (11) NBP14 prevents T14 from binding to the α7 receptor by displacing it [<a href="#B30-ijms-25-12413" class="html-bibr">30</a>], thus blocking cascades activated by T14 and preventing the aberrant downstream effects by alleviating the generation of ROS from the mitochondria and AChE release. Figure created using BioRender.</p>
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24 pages, 3148 KiB  
Article
Nitroxyl Hybrids with Curcumin and Stilbene Scaffolds Display Potent Antioxidant Activity, Remodel the Amyloid Beta Oligomer, and Reverse Amyloid Beta-Induced Cytotoxicity
by Madhu S. Budamagunta, Hidetoshi Mori, Joshua Silk, Ryan R. Slez, Balázs Bognár, Ulises Ruiz Mendiola, Tamás Kálai, Izumi Maezawa and John C. Voss
Antioxidants 2024, 13(11), 1411; https://doi.org/10.3390/antiox13111411 - 18 Nov 2024
Viewed by 656
Abstract
The disorder and heterogeneity of low-molecular-weight amyloid-beta oligomers (AβOs) underlie their participation in multiple modes of cellular dysfunction associated with the etiology of Alzheimer’s disease (AD). The lack of specified conformational states in these species complicates efforts to select or design small molecules [...] Read more.
The disorder and heterogeneity of low-molecular-weight amyloid-beta oligomers (AβOs) underlie their participation in multiple modes of cellular dysfunction associated with the etiology of Alzheimer’s disease (AD). The lack of specified conformational states in these species complicates efforts to select or design small molecules to targeting discrete pathogenic states. Furthermore, targeting AβOs alone may be therapeutically insufficient, as AD progresses as a multifactorial, self-amplifying cascade. To address these challenges, we have screened the activity of seven new candidates that serve as Paramagnetic Amyloid Ligand (PAL) candidates. PALs are bifunctional small molecules that both remodel the AβO structure and localize a potent antioxidant that mimics the activity of SOD within live cells. The candidates are built from either a stilbene or curcumin scaffold with nitroxyl moiety to serve as catalytic antioxidants. Measurements of PAL AβO binding and remolding along with assessments of bioactivity allow for the extraction of useful SAR information from screening data. One candidate (HO-4450; PMT-307), with a six-membered nitroxyl ring attached to a stilbene ring, displays the highest potency in protecting against cell-derived Aβ. A preliminary low-dose evaluation in AD model mice provides evidence of modest treatment effects by HO-4450. The results for the curcumin PALs demonstrate that the retention of the native curcumin phenolic groups is advantageous to the design of the hybrid PAL candidates. Finally, the PAL remodeling of AβO secondary structures shows a reasonable correlation between a candidate’s bioactivity and its ability to reduce the fraction of antiparallel β-strand. Full article
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<p>The potent radical scavenging of the nitroxide in cells. The N-oxyl cycles through alternative redox states. In the presence of the principal intracellular antioxidants glutathione (GSH) and ascorbate (ASC), the nitroxide undergoes bioreduction, enabling multiple rounds of PAL antioxidant activity.</p>
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<p>The chemical structure of PAL candidates. For convenience, PAL family codes are designated as PMT. The original HO- designations, as previously published, are also provided.</p>
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<p>PAL neuronal protection activity. Induced (TC–) C99 expression in the MC65 model results in amyloid beta cytotoxicity that can be eliminated with PAL titration. Error bars are the SEM from the assay of three separate measurements.</p>
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<p>CD spectra of AβOs treated with a stoichiometric amount of PAL agent. CD spectra of AβOs treated for 1 h with 40 μM PAL. The control (black) was treated with an equal volume of vehicle. ∆ε represents the molar circular dichroism.</p>
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<p>PALs’ effect on AβO-associated dyes. (<b>A</b>) The ThT fluorescence intensity of Aβ+PAL samples normalized to the sample of Aβ alone. (<b>B</b>) The NR fluorescence intensity of Aβ+PAL samples normalized to the sample of Aβ alone. Values represent the average intensities of triplicate samples measured at 20 h.</p>
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<p>Decreases in the A11 antibody recognition of AβOs following PAL treatment. Amounts of captured A11 are reported from the oxidized luminol signal of the HRP-secondary antibody. Samples were tested in quadruplicate in each assay. The results are the average of three independent assays with errors reported as SEM.</p>
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<p>Relative antioxidant capacities of PAL candidates. The oxidation of DCFH generates a strong fluorescence reflective of ROS levels. (<b>A</b>) shows the DCF intensities following peroxidase-dependent DCFH oxidation (by O<sub>2</sub>•−), in the presence of PALs, relative to the ACN control. The effect of PALs on DCFH oxidation (relative to the ACN control) in the presence of •OH radical generation is shown in (<b>B</b>). A PAL concentration of 20 μM was used to compare the superoxide oxidation of 20 μM DCFH. A PAL concentration of 40 μM was used to compare the hydroxyl radical oxidation of 50 μM DCFH. All assays were performed in quadruplicate.</p>
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<p>Effect of ROS on PAL nitroxide signal as measured by EPR spectroscopy. Shown are center line amplitudes of PAL nitroxide (160 μM) following incubation with either O<sub>2</sub>•− or •OH radical relative to PAL in buffer. Reduction in EPR amplitude is indicative of oxidation of N-oxyl moiety to diamagnetic state. We included 4 mM GSH in •OH radical samples to diminish differential production of Cu(II)-catalyzed •OH radical generation in stilbene PALs.</p>
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<p>Synthesis of HO-4897.</p>
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25 pages, 1292 KiB  
Review
Designed Cell-Penetrating Peptide Constructs for Inhibition of Pathogenic Protein Self-Assembly
by Mona Kalmouni, Yujeong Oh, Wael Alata and Mazin Magzoub
Pharmaceutics 2024, 16(11), 1443; https://doi.org/10.3390/pharmaceutics16111443 - 12 Nov 2024
Viewed by 1108
Abstract
Peptides possess a number of pharmacologically desirable properties, including greater chemical diversity than other biomolecule classes and the ability to selectively bind to specific targets with high potency, as well as biocompatibility, biodegradability, and ease and low cost of production. Consequently, there has [...] Read more.
Peptides possess a number of pharmacologically desirable properties, including greater chemical diversity than other biomolecule classes and the ability to selectively bind to specific targets with high potency, as well as biocompatibility, biodegradability, and ease and low cost of production. Consequently, there has been considerable interest in developing peptide-based therapeutics, including amyloid inhibitors. However, a major hindrance to the successful therapeutic application of peptides is their poor delivery to target tissues, cells or subcellular organelles. To overcome these issues, recent efforts have focused on engineering cell-penetrating peptide (CPP) antagonists of amyloidogenesis, which combine the attractive intrinsic properties of peptides with potent therapeutic effects (i.e., inhibition of amyloid formation and the associated cytotoxicity) and highly efficient delivery (to target tissue, cells, and organelles). This review highlights some promising CPP constructs designed to target amyloid aggregation associated with a diverse range of disorders, including Alzheimer’s disease, transmissible spongiform encephalopathies (or prion diseases), Parkinson’s disease, and cancer. Full article
(This article belongs to the Special Issue State of the Art of Membrane Active Peptides, 2nd Edition)
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<p>Designed cell-penetrating peptide (CPP) constructs inhibit amyloid aggregation and the associated cytotoxicity. Amyloid inhibitor CPP constructs are typically composed of distinct segments that contribute to the therapeutic effects (i.e., inhibition of oligomerization, fiber formation, and the associated cytotoxicity) and/or delivery properties (to target tissue, cells, and subcellular organelles). An example is NCAM1-PrP, which is composed of a hydrophobic signal peptide from the neural cell adhesion molecule-1 (NCAM1<sub>1–19</sub>: MLRTKDLIWTLFFLGTAVS) followed by a cationic nuclear localization signal (NLS)-like hexapeptide sequence from the prion protein (PrP<sub>23–28</sub>: KKRPKP) [<a href="#B149-pharmaceutics-16-01443" class="html-bibr">149</a>]. NCAM1-PrP was shown to effectively inhibit conversion of normal PrP<sup>C</sup> into its disease-associated scrapie isoform of the protein (PrP<sup>Sc</sup>) [<a href="#B149-pharmaceutics-16-01443" class="html-bibr">149</a>], and to antagonize Aβ oligomerization, fiber formation, and the associated neurotoxicity [<a href="#B150-pharmaceutics-16-01443" class="html-bibr">150</a>]. The inhibition of pathogenic protein self-assembly is attributed to the NLS-like hexapeptide, but this sequence alone is poorly cell-permeable and requires the hydrophobic NCAM1 signal peptide to acquire its CPP properties [<a href="#B165-pharmaceutics-16-01443" class="html-bibr">165</a>]. Created in <a href="http://BioRender" target="_blank">BioRender</a>. Oh, Y. (accessed on 7 October 2024) <a href="http://BioRender.com/k09j761" target="_blank">BioRender.com/k09j761</a>.</p>
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<p>Amyloid inhibitors potently abrogate cancer-associated mutant p53 aggregation and restore tumor suppressor function. Under physiological conditions, p53 protein exists as a homotetramer, with each monomer composed of discrete domains for DNA binding, tetramerization, and transcriptional activation [<a href="#B212-pharmaceutics-16-01443" class="html-bibr">212</a>]. Approximately 90% of the cancer-associated p53 mutations occur within the thermodynamically unstable DNA-binding domain (DBD) [<a href="#B212-pharmaceutics-16-01443" class="html-bibr">212</a>,<a href="#B215-pharmaceutics-16-01443" class="html-bibr">215</a>], many of which decrease the domain’s stability further and prompt its unfolding and self-assembly into amyloid-like aggregates within inactive cytosolic inclusions [<a href="#B164-pharmaceutics-16-01443" class="html-bibr">164</a>,<a href="#B214-pharmaceutics-16-01443" class="html-bibr">214</a>,<a href="#B217-pharmaceutics-16-01443" class="html-bibr">217</a>]. Similar to the CPP construct ReACp53 [<a href="#B164-pharmaceutics-16-01443" class="html-bibr">164</a>], the protein mimetic ADH-6 (a cationic tripyridylamide) efficiently enters cancer cells, where it targets aggregation-prone p53 mutants and potently abrogates their self-assembly, which shifts the folding equilibrium towards the soluble state, leading to dissociation of the inactive cytosolic inclusions and accumulation of functional protein in the nucleus [<a href="#B229-pharmaceutics-16-01443" class="html-bibr">229</a>].</p>
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27 pages, 1765 KiB  
Review
Potential Roles of Hypoxia-Inducible Factor-1 in Alzheimer’s Disease: Beneficial or Detrimental?
by Tsu-Kung Lin, Chi-Ren Huang, Kai-Jung Lin, Yi-Heng Hsieh, Shang-Der Chen, Yi-Chun Lin, A-Ching Chao and Ding-I Yang
Antioxidants 2024, 13(11), 1378; https://doi.org/10.3390/antiox13111378 - 11 Nov 2024
Viewed by 1006
Abstract
The major pathological characteristics of Alzheimer’s disease (AD) include senile plaques and neurofibrillary tangles (NFTs), which are mainly composed of aggregated amyloid-beta (Aβ) peptide and hyperphosphorylated tau protein, respectively. The excessive production of reactive oxygen species (ROS) and neuroinflammation are crucial contributing factors [...] Read more.
The major pathological characteristics of Alzheimer’s disease (AD) include senile plaques and neurofibrillary tangles (NFTs), which are mainly composed of aggregated amyloid-beta (Aβ) peptide and hyperphosphorylated tau protein, respectively. The excessive production of reactive oxygen species (ROS) and neuroinflammation are crucial contributing factors to the pathological mechanisms of AD. Hypoxia-inducible factor-1 (HIF-1) is a transcription factor critical for tissue adaption to low-oxygen tension. Growing evidence has suggested HIF-1 as a potential therapeutic target for AD; conversely, other experimental findings indicate that HIF-1 induction contributes to AD pathogenesis. These previous findings thus point to the complex, even contradictory, roles of HIF-1 in AD. In this review, we first introduce the general pathogenic mechanisms of AD as well as the potential pathophysiological roles of HIF-1 in cancer, immunity, and oxidative stress. Based on current experimental evidence in the literature, we then discuss the possible beneficial as well as detrimental mechanisms of HIF-1 in AD; these sections also include the summaries of multiple chemical reagents and proteins that have been shown to exert beneficial effects in AD via either the induction or inhibition of HIF-1. Full article
(This article belongs to the Special Issue Oxidative Stress and Alzheimer’s Disease)
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<p>The major pathologies in AD brains include deposition of extracellular Aβ plaques and intraneuronal neurofibrillary tangles (NFTs) mainly composed of hyperphosphorylated tau proteins. Excessive Aβ aggregation can trigger diverse mechanisms including excitotoxicity, oxidative stress with heightened ROS levels, mitochondrial dysfunction with compromised ATP production, aberrant cell cycle reentry with subsequent apoptosis, and activation of neurotoxic glial cells like microglia to trigger neuroinflammation; these effects together lead to the damage or even demise of the neurons. Tau belongs to the microtubule-associated protein (MAP) family that is vital for microtubule assembly and stabilization in neuronal axons. Hyperphosphorylated tau proteins not only compromise microtubule structures to disturb axonal transport but also aberrantly aggregate into NFTs, which also contribute to neuroinflammation and neuronal apoptosis. Excessive neuronal death ultimately results in brain atrophy in AD patients.</p>
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<p>Activation of HIF-1 and its biological functions. HIF-1 is a heterodimeric transcription factor consisting of an oxygen-sensitive alpha subunit (HIF-1α) and a constitutively expressed beta subunit (HIF-1β). Under normoxia, HIF-1α undergoes hydroxylation of the proline residues catalyzed by the prolyl hydroxylase (PHD), which requires molecular oxygen (O<sub>2</sub>). The hydroxylated HIF-1α is then recognized by the von Hippel–Lindau (VHL) protein and E3 ubiquitin ligase for ubiquitination and subsequent proteasomal degradation. Under hypoxia, low-oxygen tension interferes with PHD hydroxylation and disrupts the interaction between HIF-1α and VHL, thereby stabilizing HIF-1α for its accumulation to form the heterodimeric HIF-1α/β. Translocation of the HIF-1α/β complex into the nucleus, along with coactivators p300/CBP, then drive the expression of target genes containing the hypoxia-response element (HRE) sequences in their promoters. HIF-1-dependent gene expression is crucial for numerous cellular responses to adapt the tissues to hypoxic environments, such as promoting angiogenesis and regulating vascular tone, enhancing antioxidation, regulating glucose transport and reprogramming energy metabolisms, affecting apoptosis, and regulating immune responses.</p>
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<p>Multiple AD-related mechanisms, including cerebral hypoperfusion, oxidative stress, and neuroinflammation, may trigger activation of HIF-1 to exert either positive or negative impacts on AD progression. The beneficial effects triggered by HIF-1 include affecting energy metabolisms, promoting neuroprotection/neurorestoration, enhancing neurogenesis, and counteracting oxidative stress, together allowing the tissues to adapt to the hypoxic environment. The detrimental effects include enhancing BACE1 expression with heightened β-secretase activity to promote Aβ production, impairing brain microvascular functions, and triggering neuronal cell cycle reentry followed by apoptosis. Notably, several unclear effects of HIF-1 in AD deserve detailed investigation. These include modulating brain circulation/angiogenesis, regulating tau hyperphosphorylation, affecting microglial functions and neuroinflammation, controlling the activities of α-secretase, γ-secretase, PS1/2 functions, and even Aβ degradation.</p>
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34 pages, 2934 KiB  
Review
From Plaques to Pathways in Alzheimer’s Disease: The Mitochondrial-Neurovascular-Metabolic Hypothesis
by Sarah Kazemeini, Ahmed Nadeem-Tariq, Ryan Shih, John Rafanan, Nabih Ghani and Thomas A. Vida
Int. J. Mol. Sci. 2024, 25(21), 11720; https://doi.org/10.3390/ijms252111720 - 31 Oct 2024
Viewed by 2173
Abstract
Alzheimer’s disease (AD) presents a public health challenge due to its progressive neurodegeneration, cognitive decline, and memory loss. The amyloid cascade hypothesis, which postulates that the accumulation of amyloid-beta (Aβ) peptides initiates a cascade leading to AD, has dominated research and therapeutic strategies. [...] Read more.
Alzheimer’s disease (AD) presents a public health challenge due to its progressive neurodegeneration, cognitive decline, and memory loss. The amyloid cascade hypothesis, which postulates that the accumulation of amyloid-beta (Aβ) peptides initiates a cascade leading to AD, has dominated research and therapeutic strategies. The failure of recent Aβ-targeted therapies to yield conclusive benefits necessitates further exploration of AD pathology. This review proposes the Mitochondrial–Neurovascular–Metabolic (MNM) hypothesis, which integrates mitochondrial dysfunction, impaired neurovascular regulation, and systemic metabolic disturbances as interrelated contributors to AD pathogenesis. Mitochondrial dysfunction, a hallmark of AD, leads to oxidative stress and bioenergetic failure. Concurrently, the breakdown of the blood–brain barrier (BBB) and impaired cerebral blood flow, which characterize neurovascular dysregulation, accelerate neurodegeneration. Metabolic disturbances such as glucose hypometabolism and insulin resistance further impair neuronal function and survival. This hypothesis highlights the interconnectedness of these pathways and suggests that therapeutic strategies targeting mitochondrial health, neurovascular integrity, and metabolic regulation may offer more effective interventions. The MNM hypothesis addresses these multifaceted aspects of AD, providing a comprehensive framework for understanding disease progression and developing novel therapeutic approaches. This approach paves the way for developing innovative therapeutic strategies that could significantly improve outcomes for millions affected worldwide. Full article
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<p>Biochemical pathways leading to Alzheimer’s disease pathogenesis. The interconnected biochemical pathways implicated in Alzheimer’s disease (AD) development include the amyloid-beta (Aβ) pathway, neuroinflammation, tau hyperphosphorylation, calcium homeostasis dysregulation, and mitochondrial dysfunction. (<b>A</b>) In the Aβ pathway, γ-secretase cleaves amyloid precursor protein within neurons to produce Aβ peptides. These peptides are subsequently released into the extracellular space, accumulating and aggregating into Aβ oligomers and plaques. (<b>B</b>) The extracellular Aβ aggregates activate microglia, releasing pro-inflammatory cytokines and reactive oxygen species (ROS), which sustain neuroinflammation and oxidative stress. (<b>C</b>) In parallel, kinases like CDK5, GSK-3β, and MAPK hyperphosphorylate the tau protein. Reduced phosphatase activity also contributes to tau hyperphosphorylation and forms intracellular neurofibrillary tangles, contributing to neuronal dysfunction. (<b>D</b>) Dysregulation of calcium channels disrupts calcium homeostasis, increasing intracellular calcium levels and impairing mitochondrial function, further promoting neuronal apoptosis. Together, these pathways converge, leading to neurodegeneration and cognitive decline characteristic of AD. This integrated view highlights the multifactorial etiology of AD and the therapeutic potential of targeting these interrelated mechanisms.</p>
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<p>The Mitochondrial–Neurovascular–Metabolic (MNM) hypothesis of Alzheimer’s disease pathogenesis. This figure illustrates the interconnected pathways of the Mitochondrial–Neurovascular–Metabolic (MNM) hypothesis, which proposes a multifaceted approach to understanding Alzheimer’s disease (AD) pathogenesis. The model emphasizes how mitochondrial dysfunction, neurovascular integrity disruption, and metabolic impairment contribute to a state of low energy availability, ultimately leading to AD progression. Three components are involved as follows. 1. Mitochondrial dysfunction—mitochondria damage and oxidative stress: Mitochondrial dysfunction increases the production of reactive oxygen species (ROS), leading to oxidative stress and membrane damage. Electron leakage and excessive ROS generation contribute to mitochondrial damage, promoting a cycle of oxidative injury and impaired mitochondrial function. Activation of inflammatory pathways: As mitochondrial dysfunction progresses, the release of ROS activates inflammatory pathways, promoting neuroinflammation. Factors such as aging, genetic mutations, and environmental influences exacerbate mitochondrial damage. The resulting oxidative stress further contributes to neuronal damage and the overall decline in brain function seen in AD. 2. Neurovascular integrity disruption—leaky BBB and neuroinflammation: The neurovascular unit, comprising endothelial cells, pericytes, astrocytes, and neurons, plays a crucial role in maintaining blood–brain barrier (BBB) integrity. In AD, activating inflammatory cytokines such as TNF-α, IL-1β, and IL-6 leads to disruption of the BBB, allowing harmful substances to enter the brain. Astrocytic end-feet disruption: Damage to the astrocytic end-feet surrounding blood vessels contributes to BBB breakdown, further exacerbating neuroinflammation. This process perpetuates a cycle of neuronal injury, oxidative stress, and energy deficits. Compromised BBB integrity increases neuroinflammation, accelerating mitochondrial damage and contributing to AD pathogenesis. 3. Metabolic impairment—glucose hypometabolism and brain insulin resistance (BIR): The figure shows that metabolic impairments, including glucose hypometabolism and insulin resistance, are central to AD progression. Insulin signaling disruption leads to reduced PI3K/Akt pathway activation, which is critical in neuronal survival, energy metabolism, and synaptic plasticity. Insulin resistance–GSK-3β axis: Insulin resistance results in reduced glucose uptake and impaired activation of the PI3K/Akt pathway, leading to increased GSK-3β activity. This enzyme contributes to tau hyperphosphorylation and glycogen synthesis, worsening the energy deficit and contributing to AD progression. The reduced availability of glucose for neuronal energy production further drives neurodegeneration and cognitive decline in AD. Central role of low energy availability: The culmination of mitochondrial dysfunction, neurovascular disruption, and metabolic impairment leads to low energy availability, which is central to the MNM hypothesis. This energy deficit triggers widespread neuronal damage, synaptic dysfunction, and ultimately, brain atrophy, characteristic of Alzheimer’s disease. Integration with Alzheimer’s disease pathogenesis: The figure highlights how the convergence of mitochondrial, neurovascular, and metabolic disturbances culminates in AD progression, leading to characteristic features such as brain atrophy, amyloid-beta accumulation, and tau pathology. This figure comprehensively captures the MNM hypothesis’s interconnected pathways, demonstrating how mitochondrial dysfunction, neurovascular integrity disruption, and metabolic impairment collectively drive the pathogenesis of Alzheimer’s disease. The model underscores the need for multifaceted therapeutic approaches that target these interrelated mechanisms to combat AD progression effectively.</p>
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<p>Neurovascular unit dysfunction and its role in Alzheimer’s disease pathogenesis. The neurovascular unit (NVU) is a complex network comprising neurons, astrocytes, endothelial cells, and pericytes that maintains blood–brain barrier (BBB) integrity and regulates cerebral homeostasis. In AD, NVU dysfunction leads to a cascade of harmful effects that exacerbate disease progression. (<b>A</b>) The neurovascular unit (NVU) and initial disruption. The NVU, shown here in a healthy state, consists of neurons, astrocytes, pericytes, and endothelial cells that work together to support BBB integrity and regulate cerebral blood flow. In AD, NVU integrity is compromised, initiating processes that lead to neuronal damage. NVU dysfunction contributes to BBB breakdown, allowing potentially neurotoxic substances to enter the brain, which accelerates neuroinflammation and oxidative stress, as suggested by the Mitochondrial–Neurovascular–Metabolic (MNM) hypothesis discussed in our review. (<b>B</b>) Astrocyte dysfunction and Aβ accumulation. Astrocytes under stress produce cytokines and undergo mitochondrial swelling and fission, leading to increased amyloid-beta (Aβ) production. This results in altered astrocyte metabolism, where astrocytes shift to glycolysis and fatty acid β-oxidation for energy production due to mitochondrial impairment. The figure highlights how this metabolic shift disrupts the critical neuron–astrocyte interaction, depriving neurons of essential support and contributing to AD pathology by furthering Aβ aggregation and neurotoxicity. This aligns with the MNM hypothesis, which posits that metabolic disturbances play a central role in AD progression by impairing cellular energetics. (<b>C</b>) Cytokine production, BBB permeability, and reactive astrogliosis. NVU damage increases inflammatory cytokine production (e.g., IL-1β, TNF-α, IL-6), further weakening the BBB by disrupting tight junctions. This facilitates greater BBB permeability and impairs the efflux of Aβ, resulting in its accumulation in the brain parenchyma. Reactive astrogliosis and microglial activation are inflammatory responses, creating a feedback loop that exacerbates neuronal damage. This progression supports the MNM hypothesis by demonstrating how neurovascular breakdown and inflammation intertwine metabolic and mitochondrial dysfunctions in AD. This figure illustrates critical concepts of the MNM hypothesis proposed in our manuscript, which argues that AD results from interconnected pathways involving mitochondrial dysfunction, neurovascular dysregulation, and metabolic impairment. The NVU dysfunction depicted here exemplifies how neurovascular compromise can accelerate AD by promoting Aβ accumulation, oxidative stress, and inflammation. Therapeutic strategies targeting NVU integrity, inflammation, and metabolic health could be promising avenues for disease modification in AD.</p>
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<p>Comparative analysis of glucose transporter expression and glucose metabolism in healthy versus Alzheimer’s disease (AD) brains. (<b>A</b>) In a healthy brain, glucose is the primary energy source, and efficient glucose metabolism is critical for maintaining normal neuronal function and cognitive processes. Glucose transporters GLUT1 and GLUT3 play a central role in facilitating glucose uptake. GLUT1, primarily expressed on endothelial cells of the blood–brain barrier (BBB) and astrocytes, ensures a steady influx of glucose into the brain’s parenchyma. GLUT3, present in neurons, provides glucose for neuronal energy demands, supporting synaptic activity, neurotransmitter synthesis, and overall neuronal health. This efficient glucose uptake and metabolism sustain neurons’ healthy structure and function, depicted as the healthy neuron on the right. (<b>B</b>) In the AD brain, a notable downregulation and dysfunction of glucose transporters GLUT1 and GLUT3 occurs, depicted by their transparent appearance, indicating reduced expression and impaired function. This downregulation and dysfunction decrease glucose uptake and hypometabolism, leading to compromised energy production, increased neuronal stress, and synaptic dysfunction. The impaired glucose transport causes an energy deficit, ultimately contributing to amyloid-beta (Aβ) plaque formation and tau pathology, hallmark AD features surrounding the diseased neuron (diffuse and dense Aβ plaques). The metabolic disturbance accelerates neurodegeneration and the progression of AD. This figure underscores the pivotal role of glucose metabolism in AD pathogenesis, underscoring how the diminished expression and malfunction of GLUT1 and GLUT3 contribute to neuronal dysfunction, synaptic impairment, and overall neurodegeneration. These alterations align with the Mitochondrial–Neurovascular–Metabolic (MNM) hypothesis discussed in the paper, demonstrating how disruptions in metabolic pathways play a central role in AD development. The significance of these findings provides crucial insights into the mechanisms underlying AD.</p>
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16 pages, 4732 KiB  
Article
Beta-Amyloid and Its Asp7 Isoform: Morphological and Aggregation Properties and Effects of Intracerebroventricular Administration
by Valeriya Ushakova, Yana Zorkina, Olga Abramova, Regina Kuanaeva, Evgeny Barykin, Alexander Vaneev, Roman Timoshenko, Peter Gorelkin, Alexander Erofeev, Eugene Zubkov, Marat Valikhov, Olga Gurina, Vladimir Mitkevich, Vladimir Chekhonin and Anna Morozova
Brain Sci. 2024, 14(10), 1042; https://doi.org/10.3390/brainsci14101042 - 21 Oct 2024
Viewed by 913
Abstract
Background/Objectives: One of the hallmarks of Alzheimer’s disease (AD) is the accumulation of aggregated beta-amyloid (Aβ) protein in the form of senile plaques within brain tissue. Senile plaques contain various post-translational modifications of Aβ, including prevalent isomerization of Asp7 residue. The Asp7 isomer [...] Read more.
Background/Objectives: One of the hallmarks of Alzheimer’s disease (AD) is the accumulation of aggregated beta-amyloid (Aβ) protein in the form of senile plaques within brain tissue. Senile plaques contain various post-translational modifications of Aβ, including prevalent isomerization of Asp7 residue. The Asp7 isomer has been shown to exhibit increased neurotoxicity and induce amyloidogenesis in brain tissue of transgenic mice. The toxicity of Aβ peptides may be partly mediated by their structure and morphology. In this respect, in this study we analyzed the structural and aggregation characteristics of the Asp7 isoform of Aβ42 and compared them to those of synthetic Aβ42. We also investigated the effects of intracerebroventricular (i.c.v.) administration of these peptides, a method often used to induce AD-like symptoms in rodent models. Methods: Atomic force microscopy (AFM) was conducted to compare the morphological and aggregation properties of Aβ42 and Asp7 iso-Aβ42. The effects of i.c.v. stereotaxic administration of the proteins were assessed via behavioral analysis and reactive oxygen species (ROS) estimation in vivo using a scanning ion-conductance microscope with a confocal module. Results: AFM measurements revealed structural differences between the two peptides, most notably in their soluble toxic oligomeric forms. The i.c.v. administration of Asp7 iso-Aβ42 induced spatial memory deficits in rats and elevated oxidative stress levels in vivo, suggesting a potential of ROS in the pathogenic mechanism of the peptide. Conclusions: The findings support the further investigation of Asp7 iso-Aβ42 in translational research on AD and suggest its involvement in neurodegenerative processes. Full article
(This article belongs to the Section Neuropharmacology and Neuropathology)
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<p>Scheme of the experiment. (<b>A</b>) Stage 1. Evaluation of morphological and aggregation properties of Aβ<sub>42</sub> and Asp7 iso-Aβ<sub>42</sub> under various incubation conditions using AFM. (<b>B</b>) Stage 2. Scheme of the experimental procedure after i.c.v. administration of Aβ<sub>42</sub> and Asp7 iso-Aβ<sub>42</sub>. AFM—atomic force microscopy, i.c.v.—intacerebroventricular, OFT—open field test, MWM—Morris water-maze test, ROS—reactive oxygen species.</p>
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<p>Aβ aggregates imaged via AFM. (<b>A</b>) Aβ<sub>42</sub>, incubated for 24 h at 4 °C; (<b>B</b>) Aβ<sub>42</sub>, incubated for 24 h at 37 °C; (<b>C</b>) iso-Aβ<sub>42</sub>, incubated for 24 h at 4 °C; (<b>D</b>) iso-Aβ42, incubated for 24 h at 37 °C; (<b>E</b>) Aβ<sub>42</sub>, incubated for 48 h at 4 °C; (<b>F</b>) Aβ<sub>42</sub>, incubated for 48 h at 37 °C; (<b>G</b>) iso-Aβ<sub>42</sub>, incubated for 48 h at 4 °C; (<b>H</b>) iso-Aβ<sub>42</sub>, incubated for 48 h at 37 °C.</p>
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<p>Oligomeric aggregates (4 °C, 24 h), imaged via AFM, with statistical analysis: (<b>A</b>) Aβ oligomers; (<b>B</b>) iso-Aβ oligomers; (<b>C</b>) box plots of two diameter arrays (* <span class="html-italic">p</span> &lt; 0.05, one-way ANOVA); (<b>D</b>) histograms of oligomer diameters (N(Aβ<sub>42</sub>) = 702, N(iso-Aβ<sub>42</sub>) = 630).</p>
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<p>Behavioral assessment after i.c.v. Aβ injection. (<b>A</b>) distance traveled (cm) in the OFT; (<b>B</b>) number of rearing behaviors in the OFT; (<b>C</b>) platform search time (s) in the MWM test (test trial, 48 h); (<b>D</b>) time in the square where platform was earlier located (s) in the MWM test (test trial, 1 week). C—sham-operated control group, Aβ<sub>42</sub>—Aβ<sub>42</sub> injected group, iso—Asp7 iso-Aβ<sub>42</sub> injected group. *—<span class="html-italic">p</span> &lt; 0.05.</p>
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<p>In vivo ROS electrochemical measurement in rat brain. (<b>A</b>) Scheme of ROS measurement in cortex and hippocampus by Pt nanoelectrode; (<b>B</b>) ROS level in rat brain (cortex, hippocampus) after injection of Aβ<sub>42</sub> or Asp7 iso-Aβ<sub>42</sub>. C—sham-operated control group, Ab<sub>42</sub>—Aβ<sub>42</sub> injected group, isoAb—Asp7 iso-Aβ<sub>42</sub> injected group. *—<span class="html-italic">p</span>&lt; 0.05.</p>
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15 pages, 3652 KiB  
Article
Effects of Angiotensin-I-Converting Enzyme (ACE) Mutations Associated with Alzheimer’s Disease on Blood ACE Phenotype
by Olga V. Kryukova, Igor O. Islanov, Elena V. Zaklyazminskaya, Dmitry O. Korostin, Vera A. Belova, Valery V. Cheranev, Zhanna A. Repinskaia, Svetlana A. Tonevitskaya, Pavel A. Petukhov, Steven M. Dudek, Olga A. Kost, Denis V. Rebrikov and Sergei M. Danilov
Biomedicines 2024, 12(10), 2410; https://doi.org/10.3390/biomedicines12102410 - 21 Oct 2024
Viewed by 909
Abstract
Backgrounds. Our recent analysis of 1200+ existing missense ACE mutations revealed that 400+ mutations are damaging and led us to hypothesize that carriers of heterozygous loss-of-function (LoF) ACE mutations (which result in low ACE levels) could be at risk for the development of [...] Read more.
Backgrounds. Our recent analysis of 1200+ existing missense ACE mutations revealed that 400+ mutations are damaging and led us to hypothesize that carriers of heterozygous loss-of-function (LoF) ACE mutations (which result in low ACE levels) could be at risk for the development of late-onset Alzheimer’s disease (AD). Methods. Here, we quantified blood ACE levels in EDTA plasma from 41 subjects with 10 different heterozygous ACE mutations, as well as 33 controls, and estimated the effect of these mutations on ACE phenotype using a set of mAbs to ACE and two ACE substrates. Results. We found that relatively frequent (~1%) AD-associated ACE mutations in the N domain of ACE, Y215C, and G325R are truly damaging and likely transport-deficient, with the ACE levels in plasma at only ~50% of controls. Another AD-associated ACE mutation, R1250Q, in the cytoplasmic tail, did not cause a decrease in ACE and likely did not affect surface ACE expression. We have also developed a method to identify patients with anti-catalytic mutations in the N domain. These mutations may result in reduced degradation of amyloid beta peptide Aβ42, an important component for amyloid deposition. Consequently, these could pose a risk factor for the development of AD. Conclusions. Therefore, a systematic analysis of blood ACE levels in patients with all ACE mutations has the potential to identify individuals at an increased risk of late-onset AD. These individuals may benefit from future preventive or therapeutic interventions involving a combination of chemical and pharmacological chaperones, as well as proteasome inhibitors, aiming to enhance ACE protein traffic. This approach has been previously demonstrated in our cell model of the transport-deficient ACE mutation Q1069R. Full article
(This article belongs to the Section Molecular and Translational Medicine)
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<p>Localization of relevant ACE mutations in the N domain of ACE. The position of each ACE mutation is shown on the Cryo-EM structure of the truncated (1–1201) human somatic ACE (PDB 7Q3Y) [<a href="#B35-biomedicines-12-02410" class="html-bibr">35</a>] using molecular surface representation. Key amino acids are denoted using somatic ACE numbering. The surface is colored light beige, with specific amino acid residues colored as follows: ACE mutations are highlighted in magenta and additionally marked by arrows; Asn as putative glycosylation sites are highlighted in green; the last visible residue in the C-terminal end of this truncated somatic ACE is marked with its number, S1201. The epitopes for several mAbs to the N domain (9B9, 5F1, i1A8) are shown as black circles for orientation with a diameter of 30 Å, which corresponds to 700 Å<sup>2</sup> of the area covered by each listed mAb.</p>
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<p>Quantification of blood ACE levels in carriers of ACE mutations. Blood ACE protein was precipitated from EDTA plasma by mAb 9B9 (which binds to an epitope on the N domain of ACE), and its activity was quantified fluorometrically using ZPHL as a substrate. (<b>A</b>) Immunoreactive ACE protein was quantified in plasma samples obtained from 41 carriers of 10 different ACE mutations. Asterisk indicates that ACE from subject 4771 had two mutations. (<b>B</b>) Plasma ACE levels adjusted according to the donor’s genotype for the I/D polymorphism [<a href="#B37-biomedicines-12-02410" class="html-bibr">37</a>,<a href="#B38-biomedicines-12-02410" class="html-bibr">38</a>]. (<b>C</b>) ACE levels (from (<b>B</b>)) were calculated for each group of subjects with the specified ACE mutation; “<span class="html-italic">n</span>” = the number of donors in each group. For carriers of the Y215C, G325R, Q259R, and R1250Q mutations, corresponding median values were calculated and significance analyzed using the Mann–Whitney U test. ACE levels for the other mutations in which only a single subject was available for sampling were presented as the means +/− standard deviations of several independent assessments of those individual samples. Data were expressed as % of ACE levels compared to the corresponding value for the pooled control plasma samples from subjects without ACE mutations (green bars). Orange and brown bars indicate samples with ACE levels higher than 120% and 150% of those of controls, respectively. Yellow and blue bars indicate samples with ACE levels lower than 80% and 50% of those of controls, respectively. Grey bars-values between 80% and 120% from control values. (<b>D</b>) Predictions of the potential damaging effects of nine mutations on the ACE protein using four different predictive tools, derived from <a href="#app1-biomedicines-12-02410" class="html-app">Table S1</a> [<a href="#B15-biomedicines-12-02410" class="html-bibr">15</a>]. Values shown in red are predicted to be damaging by the listed predictive engine; purple-probably damaging, values in black are predicted to be benign. * <span class="html-italic">p</span> &lt; 0.01.</p>
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<p>ACE precipitation by mAbs from the EDTA plasma of carriers of ACE mutations. Blood ACE protein was precipitated using two mAbs targeting the N domain (9B9 and 1G12) and mAb2H9, targeting the C domain. Precipitated ACE activity was quantified as in <a href="#biomedicines-12-02410-f002" class="html-fig">Figure 2</a>. (<b>A</b>) 2H9/9B9 binding ratio; (<b>B</b>) 2H9/1G12 binding ratio; (<b>C</b>) 1G12/9B9 binding ratio. The standard deviations (SDs) for precipitated ACE activity for all three mAbs did not exceed 10%; therefore, their ratios were presented as mean (without individual SD). Bar coloring is the same as in <a href="#biomedicines-12-02410-f002" class="html-fig">Figure 2</a>.</p>
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<p>Localization of P476A, P601L, and G610S mutations in the N domain of ACE. Shown is a molecular surface presentation of the crystal structure for the N domain dimer of human ACE, where seven potential Asn glycosylation sites were substituted by Gln residues (PDB 3NXQ). Key amino acids are denoted using somatic ACE numbering. The surface is indicated by light beige, with specific amino acid residues colored as follows: Asn or Asn substituted by Gln in some putative glycosylation sites [<a href="#B36-biomedicines-12-02410" class="html-bibr">36</a>] are highlighted in green; ACE mutations (P476A, P601L, and G610S) are highlighted in magenta. The epitope for mAb5F1 in the N domain was used to test blood samples with these ACE mutations and is marked with a black circle. The interface of dimerization of the N domain [<a href="#B47-biomedicines-12-02410" class="html-bibr">47</a>,<a href="#B48-biomedicines-12-02410" class="html-bibr">48</a>] is shown as a red ellipse, with Y465 marked in bright red.</p>
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<p>Effects of different ACE mutations on the catalytic properties of ACEs. Blood ACE protein was precipitated from EDTA plasma using mAb 9B9. Precipitated ACE activity was quantified fluorometrically as in <a href="#biomedicines-12-02410-f002" class="html-fig">Figure 2</a>, using ZPHL (in (<b>A</b>)) and HHL (in (<b>B</b>)) as substrates. Data in (<b>C</b>) were expressed as a % of the ZPHL/HHL hydrolysis ratio obtained from control samples. Coloring of bars is the same as in <a href="#biomedicines-12-02410-f002" class="html-fig">Figure 2</a>. Values for the P476A mutant are outlined in the orange box.</p>
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<p>Localization of Q259R and G325R mutations in the N domain of ACE. Shown is the Cryo-EM structure of the truncated (1–1201) human somatic ACE (PDB 7Q3Y) [<a href="#B35-biomedicines-12-02410" class="html-bibr">35</a>] using molecular surface representation. The coloring is the same as in <a href="#biomedicines-12-02410-f001" class="html-fig">Figure 1</a>. ACE mutations Q259R and G325R are highlighted with magenta. The epitopes for mAbs in the N domain (5F1/2D1, and 1G12) used to test these blood samples are outlined with black circles.</p>
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<p>Localization of AD-associated ACE mutation R1250Q in the cytoplasmic tail. (<b>A</b>) Schema showing the localization of R1250Q ACE mutations in the cytoplasmic tail of ACE, adapted from [<a href="#B53-biomedicines-12-02410" class="html-bibr">53</a>]. (<b>B</b>,<b>C</b>) Molecular dynamic simulations of the transmembrane and cytoplasmic domains of ACE in POPC lipid membranes. The sequence is modeled from position Asp1222 to Ser1277. (<b>B</b>) is the WT helix span from Q1224 to L1247, and (<b>C</b>) is the R1250Q ACE mutant helix span from R1227 to Q1249. The average angles of transmembrane helices in mutant ACEs were changed in the lipid bilayers in comparison with WT ACE (from [<a href="#B15-biomedicines-12-02410" class="html-bibr">15</a>], with permission from publisher).</p>
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19 pages, 905 KiB  
Review
Novelties on Neuroinflammation in Alzheimer’s Disease–Focus on Gut and Oral Microbiota Involvement
by Cristina Popescu, Constantin Munteanu, Aurelian Anghelescu, Vlad Ciobanu, Aura Spînu, Ioana Andone, Mihaela Mandu, Roxana Bistriceanu, Mihai Băilă, Ruxandra-Luciana Postoiu, Andreea-Iulia Vlădulescu-Trandafir, Sebastian Giuvara, Alin-Daniel Malaelea and Gelu Onose
Int. J. Mol. Sci. 2024, 25(20), 11272; https://doi.org/10.3390/ijms252011272 - 19 Oct 2024
Cited by 1 | Viewed by 2122
Abstract
Recent studies underscore the role of gut and oral microbiota in influencing neuroinflammation through the microbiota–gut–brain axis, including in Alzheimer’s disease (AD). This review aims to provide a comprehensive synthesis of recent findings on the involvement of gut and oral microbiota in the [...] Read more.
Recent studies underscore the role of gut and oral microbiota in influencing neuroinflammation through the microbiota–gut–brain axis, including in Alzheimer’s disease (AD). This review aims to provide a comprehensive synthesis of recent findings on the involvement of gut and oral microbiota in the neuroinflammatory processes associated with AD, emphasizing novel insights and therapeutic implications. This review reveals that dysbiosis in AD patients’ gut and oral microbiota is linked to heightened peripheral and central inflammatory responses. Specific bacterial taxa, such as Bacteroides and Firmicutes in the gut, as well as Porphyromonas gingivalis in the oral cavity, are notably altered in AD, leading to significant changes in microglial activation and cytokine production. Gut microbiota alterations are associated with increased intestinal permeability, facilitating the translocation of endotoxins like lipopolysaccharides (LPS) into the bloodstream and exacerbating neuroinflammation by activating the brain’s toll-like receptor 4 (TLR4) pathways. Furthermore, microbiota-derived metabolites, including short-chain fatty acids (SCFAs) and amyloid peptides, can cross the blood-brain barrier and modulate neuroinflammatory responses. While microbial amyloids may contribute to amyloid-beta aggregation in the brain, certain SCFAs like butyrate exhibit anti-inflammatory properties, suggesting a potential therapeutic avenue to mitigate neuroinflammation. This review not only highlights the critical role of microbiota in AD pathology but also offers a ray of hope by suggesting that modulating gut and oral microbiota could represent a novel therapeutic strategy for reducing neuroinflammation and slowing disease progression. Full article
(This article belongs to the Special Issue Neuroinflammation: Advancements in Pathophysiology and Therapies)
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<p>The intricate relationship between neuroinflammation, microbiota, and Alzheimer’s disease.</p>
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18 pages, 1153 KiB  
Review
Pathology of Amyloid-β (Aβ) Peptide Peripheral Clearance in Alzheimer’s Disease
by Andrey Tsoy, Bauyrzhan Umbayev, Aliya Kassenova, Bibifatima Kaupbayeva and Sholpan Askarova
Int. J. Mol. Sci. 2024, 25(20), 10964; https://doi.org/10.3390/ijms252010964 - 11 Oct 2024
Cited by 1 | Viewed by 2268
Abstract
Although Alzheimer’s disease (AD) is traditionally viewed as a central nervous system disorder driven by the cerebral accumulation of toxic beta-amyloid (Aβ) peptide, new interpretations of the amyloid cascade hypothesis have led to the recognition of the dynamic equilibrium in which Aβ resides [...] Read more.
Although Alzheimer’s disease (AD) is traditionally viewed as a central nervous system disorder driven by the cerebral accumulation of toxic beta-amyloid (Aβ) peptide, new interpretations of the amyloid cascade hypothesis have led to the recognition of the dynamic equilibrium in which Aβ resides and the importance of peripheral Aβ production and degradation in maintaining healthy Aβ levels. Our review sheds light on the critical role of peripheral organs, particularly the liver, in the metabolism and clearance of circulating Aβ. We explore the mechanisms of Aβ transport across the blood–brain barrier (BBB) via transport proteins such as LRP1 and P-glycoprotein. We also examine how peripheral clearance mechanisms, including enzymatic degradation and phagocytic activity, impact Aβ homeostasis. Our review also discusses potential therapeutic strategies targeting peripheral Aβ clearance pathways. By enhancing these pathways, we propose a novel approach to reducing cerebral Aβ burden, potentially slowing AD progression. Full article
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<p>Overview of the key Aβ transport pathways in the brain.</p>
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<p>Schematic pathways of peripheral metabolism of Aβ.</p>
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30 pages, 2318 KiB  
Review
The Dual Role of Amyloid Beta-Peptide in Oxidative Stress and Inflammation: Unveiling Their Connections in Alzheimer’s Disease Etiopathology
by Hugo Fanlo-Ucar, Pol Picón-Pagès, Víctor Herrera-Fernández, Gerard ILL-Raga and Francisco J. Muñoz
Antioxidants 2024, 13(10), 1208; https://doi.org/10.3390/antiox13101208 - 8 Oct 2024
Cited by 2 | Viewed by 2717
Abstract
Alzheimer’s disease (AD) is a progressive neurodegenerative disease, and it is currently the seventh leading cause of death worldwide. It is characterized by the extracellular aggregation of the amyloid β-peptide (Aβ) into oligomers and fibrils that cause synaptotoxicity and neuronal death. Aβ exhibits [...] Read more.
Alzheimer’s disease (AD) is a progressive neurodegenerative disease, and it is currently the seventh leading cause of death worldwide. It is characterized by the extracellular aggregation of the amyloid β-peptide (Aβ) into oligomers and fibrils that cause synaptotoxicity and neuronal death. Aβ exhibits a dual role in promoting oxidative stress and inflammation. This review aims to unravel the intricate connection between these processes and their contribution to AD progression. The review delves into oxidative stress in AD, focusing on the involvement of metals, mitochondrial dysfunction, and biomolecule oxidation. The distinct yet overlapping concept of nitro-oxidative stress is also discussed, detailing the roles of nitric oxide, mitochondrial perturbations, and their cumulative impact on Aβ production and neurotoxicity. Inflammation is examined through astroglia and microglia function, elucidating their response to Aβ and their contribution to oxidative stress within the AD brain. The blood–brain barrier and oligodendrocytes are also considered in the context of AD pathophysiology. We also review current diagnostic methodologies and emerging therapeutic strategies aimed at mitigating oxidative stress and inflammation, thereby offering potential treatments for halting or slowing AD progression. This comprehensive synthesis underscores the pivotal role of Aβ in bridging oxidative stress and inflammation, advancing our understanding of AD and informing future research and treatment paradigms. Full article
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<p>Physiological APP cleavage pathways are depicted. The non-amyloidogenic pathway is shown on the left side of the figure. In this pathway, α-secretase cleaves APP, producing sAPPα and CTF83. Subsequently, CTF83 is cleaved by γ-secretase, releasing the P3 peptide extracellularly and AICD intracellularly. The amyloidogenic pathway is shown on the right side of the figure. This pathway involves β-secretase cleavage, which takes place mainly within the intracellular endosome pathway, thus producing sAPPβ and CTF99. CTF99 is then cleaved by γ-secretase at the cell membrane, releasing AICD intracellularly and Aβ extracellularly.</p>
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<p>Physiological (<b>A</b>) and pathophysiological (<b>B</b>) brain Aβ equilibrium. (<b>A</b>) Aβ is predominantly produced as Aβ<sub>1-40</sub> and can be degraded within the brain parenchyma or cleared to the blood via LRP, ultimately being degraded in the liver. (<b>B</b>) With age, the production of Aβ<sub>1-42</sub> increases, while its degradation within the brain and clearance decrease. This leads to aggregation, facilitated by protein chaperones and redox-active metals.</p>
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<p>NMDAR is a target for Aβ oligomers. (<b>A</b>) LTP allows memory formation by the continuous stimulation of the glutamatergic signaling. Glutamate increases calcium entrance activating nNOS. NO induces the release of glutamate by the presynaptic terminal. Calcium also activates CaMKIIα, that phosphorylates CREB, triggering the transcription of genes needed for synaptic spine growth. (<b>B</b>) Aβ oligomers bind to NMDAR impairing a proper closing, which produces a leak of calcium into the cell that induces synaptotoxicity and neuronal death.</p>
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<p>Aβ oligomers produce oxidative stress and neuroinflammation. Synaptic and extrasynaptic Aβ oligomers produce ROS that damage proteins, lipids, and DNA. The Aβ oligomers attract astrocytes that phagocytose them, which triggers their activation, releasing proinflammatory factors and more ROS. Microglia are attracted by chemokines and, after activation, also release proinflammatory factors. All together, these processes produce synaptotoxicity and neurotoxicity.</p>
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