[go: up one dir, main page]
More Web Proxy on the site http://driver.im/
Skip to main content

Semantic Description of Plant Phenological Development Stages, Starting with Grapevine

  • Conference paper
  • First Online:
Metadata and Semantic Research (MTSR 2020)

Abstract

The French project Data to Knowledge in Agronomy and Biodiversity (D2KAB) will make available a semantically-enabled French agricultural alert newsletter. In order to describe/annotate crop phenological development stages in the newsletters, we need a specific semantic resource to semantically represent each stages. Several scales already exist to describe plant phenological development stages. BBCH, considered a reference, offers several sets of stages –one per crop called ‘individual scales’–and a general one. The French Wine and Vine Institute (IFV) has aligned several existing scales in order to identify the most useful grapevine development stages for agricultural practices. Unfortunately these scales are not available in a semantic form preventing their use in agricultural semantic applications. In this paper, we present our work of creating an ontological framework for semantic description of plant development stages and transforming specific scales into RDF vocabularies; we introduce the BBCH-based Plant Phenological Description Ontology and we illustrate this framework with four scales related to grapevine.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Subscribe and save

Springer+ Basic
£29.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or eBook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Chapter
GBP 19.95
Price includes VAT (United Kingdom)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
GBP 35.99
Price includes VAT (United Kingdom)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
GBP 44.99
Price includes VAT (United Kingdom)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

Notes

  1. 1.

    http://agroportal.lirmm.fr/ontologies/CO_356.

  2. 2.

    http://agroportal.lirmm.fr/ontologies/CROPUSAGE_FR (fcu on the Figures).

  3. 3.

    Cellfie (https://github.com/protegeproject/cellfie-plugin) allows to import spreadsheets content inside OWL ontologies in Protégé.

  4. 4.

    Or, to be more generic, we need a mechanism to map a skos:Concept in AGROVOC to a owl:Class in our ontology.

References

  1. Entwicklungsstadien mono- und dikotyler Pflanzen: BBCH Monografie

    Google Scholar 

  2. Etapas de desarrollo de las plantas monocotiledóneas y dicotiledóneas: BBCH Monografia

    Google Scholar 

  3. Growth stages of mono- and dicotyledonous plants: BBCH Monograph

    Google Scholar 

  4. Stades phénologiques des mono-et dicotylédones cultivées: BBCH Monographie

    Google Scholar 

  5. Alistair, M., Sean, B.: SKOS simple knowledge organization system. W3C Recommendation, W3C, August 2009. http://www.w3.org/2004/02/skos/core.html

  6. Arp, R., Smith, B., Spear, A.D.: Building Ontologies with Basic Formal Ontology. MIT Press, Cambridge (2015)

    Google Scholar 

  7. Aubin, S., Bisquert, P., Buche, P., Dibie, J., Ibanescu, L., Jonquet, C., Roussey, C.: Recent progresses in data and knowledge integration for decision support in agri-food chains. 30èmes Journées Francophones d’Ingénierie des Connaissances. IC 2019, Toulouse, France, pp. 43–59, July 2019

    Google Scholar 

  8. Baggiolini, M.: Les stades repères dans le développement annuel de la vigne et leur utilisation pratique. Revue Romande d’Agriculture, de Viticulture et d’Arboriculture 1, 4–6 (1952)

    Google Scholar 

  9. Baillod, M., Baggiolini, M.: Les stades repères de la vigne. Rev. Suisse Vitic. Arboric. Hortic 25(1), 7–9 (1993)

    Google Scholar 

  10. Bizer, C., Heath, T., Berners-Lee, T.: Linked data - the story so far. Semantic Web Inf. Syst. 5(3), 1–22 (2009)

    Article  Google Scholar 

  11. Coombe, B.G.: Growth stages of the grapevine: adoption of a system for identifying grapevine growth stages. Australian J. Grape Wine Res. 1(2), 104–110 (1995)

    Article  Google Scholar 

  12. Cooper, L., et al.: The plant ontology as a tool for comparative plant anatomy and genomic analyses. Plant Cell Physiol. 54(2), e1 (2012)

    Article  Google Scholar 

  13. Dutta, B., Toulet, A., Emonet, V., Jonquet, C.: New generation metadata vocabulary for ontology description and publication. In: Garoufallou, E., Virkus, S., Siatri, R., Koutsomiha, D. (eds.) MTSR 2017. CCIS, vol. 755, pp. 173–185. Springer, Cham (2017). https://doi.org/10.1007/978-3-319-70863-8_17

    Chapter  Google Scholar 

  14. Garijo, D., Poveda Villalon, M.: A checklist for complete vocabulary metadata. Technical report WIDOCO, April 2017

    Google Scholar 

  15. IFV: Les stades phénologique de la vigne (2017). https://www.vignevin.com/wp-content/uploads/2019/05/Poster-stades-ph%C3%A9nologiques-de-la-vigne.pdf

  16. Jaiswal, P., et al.: Planteome: a resource for common reference ontologies and applications for plant biology. In: 24th Plant and Animal Genome Conference, PAG 2016. San Diego, USA, January 2016

    Google Scholar 

  17. Jonquet, C., et al.: AgroPortal: a vocabulary and ontology repository for agronomy. Comput. Electron. Agri. 144, 126–143 (2018)

    Article  Google Scholar 

  18. Lorenz, D., Eichhorn, K., Bleiholder, H., Klose, R., Meier, U., Weber, E.: Growth stages of the grapevine: phenological growth stages of the grapevine (Vitis vinifera L. ssp. vinifera)—codes and descriptions according to the extended BBCH scale. Australian J. Grape Wine Res. 1(2), 100–103 (1995)

    Google Scholar 

  19. Musen, M.A.: The protégé project: a look back and a look forward. AI Matters 1(4), 4–12 (2015)

    Article  Google Scholar 

  20. Poveda-Villalón, M.: A reuse-based lightweight method for developing linked data ontologies and vocabularies. In: Simperl, E., Cimiano, P., Polleres, A., Corcho, O., Presutti, V. (eds.) ESWC 2012. LNCS, vol. 7295, pp. 833–837. Springer, Heidelberg (2012). https://doi.org/10.1007/978-3-642-30284-8_66

    Chapter  Google Scholar 

  21. Roussey, C., et al.: A methodology for the publication of agricultural alert bulletins as LOD. Comput. Electron. Agri. 142, 632–650 (2017)

    Article  Google Scholar 

  22. Sachit Rajbhandari, J.K.: The AGROVOC concept scheme a walkthrough. Integr. Agri. 11(5), 694–699 (2012)

    Article  Google Scholar 

  23. Shrestha, R., et al.: Multifunctional crop trait ontology for breeders’ data: field book, annotation, data discovery and semantic enrichment of the literature. AoB Plants 2010, plq008 (2010)

    Google Scholar 

  24. Stefano, A., Yves, J., Fabrizio, C., Armando, S., Johannes, K.: Migrating bibliographic datasets to the semantic web: the AGRIS case. Semantic Web 6(2), 113–120 (2015)

    Article  Google Scholar 

  25. Stucky, B.J., Guralnick, R., Deck, J., Denny, E.G., Bolmgren, K., Walls, R.: The plant phenology ontology: a new informatics resource for large-scale integration of plant phenology data. Front. Plant Sci. 9, 517 (2018)

    Google Scholar 

  26. Walls, R.L., et al.: The plant ontology facilitates comparisons of plant development stages across species. Front. Plant Sci. 10, 631 (2019)

    Article  Google Scholar 

Download references

Acknowledgements

This work was achieved with support of the Data to Knowledge in Agronomy and Biodiversity (D2KAB – www.d2kab.org) project that received funding from the French National Research Agency (ANR-18-CE23-0017); as well as with help of French Wine and Vine Institute (www.vignevin.com). We also thanks Thibaut Scholasch (Fruition Sciences) for help translating the labels.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Catherine Roussey .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2021 Springer Nature Switzerland AG

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Roussey, C., Delpuech, X., Amardeilh, F., Bernard, S., Jonquet, C. (2021). Semantic Description of Plant Phenological Development Stages, Starting with Grapevine. In: Garoufallou, E., Ovalle-Perandones, MA. (eds) Metadata and Semantic Research. MTSR 2020. Communications in Computer and Information Science, vol 1355. Springer, Cham. https://doi.org/10.1007/978-3-030-71903-6_25

Download citation

  • DOI: https://doi.org/10.1007/978-3-030-71903-6_25

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-030-71902-9

  • Online ISBN: 978-3-030-71903-6

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics