Bead-Based and Multiplexed Immunoassays for Protein Profiling via Sequential Affinity Capture

Antibody microarrays offer high-throughput immunoassays for multiplexed analyses of clinical samples. For such approaches, samples are either labeled in solution to enable a direct readout on the single binder assay format or detected by matched pairs of capture and detection antibodies in dual binder assay format, also known as sandwich assays. Aiming to benefit from the flexibility and capacity offered by single binder assay readout and the specificity and sensitivity of dual binder assays, we developed a multiplexed dual binder procedure that is based on a sequential, rather than combined, antigen binding. The method, entitled dual capture assay (DCA), is composed of an initial antigen capture by antibodies on beads, followed by labeling of captured protein targets on beads, combinatorial elution steps at high and low pH, and a readout using a secondary bead array. Compared to classical single binder assays, the described method demonstrated several advantages such as reduced contribution of off-target binding, lower noise levels, and improved correlation when comparing with clinical reference values. This procedure describes a novel and versatile immunoassay strategy for proteome profiling in body fluids.

We thank all members of the Biobank Profiling group at SciLifeLab, as well as the entire staff of the Human Protein Atlas. This study was funded by grants from Science for Life Laboratory, the Knut and Alice Wallenberg Foundation, and the KTH Center for Applied Proteomics (KCAP) funded by the Erling-Persson Family Foundation. The authors declare no conflict of interest.

Authors and Affiliations

1. Affinity Proteomics, SciLifeLab, School of Biotechnology, KTH – Royal Institute of Technology, Box 1031, 171 21, Solna, Sweden

   Elin Birgersson, Jochen M. Schwenk & Burcu Ayoglu

Corresponding author

Correspondence to Jochen M. Schwenk .

Editors and Affiliations

1. Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria, Australia

   David W. Greening

2. Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria, Australia

   Richard J. Simpson

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