[HTML][HTML] Recurring mutations found by sequencing an acute myeloid leukemia genome

…, J Baty, S Heath, WD Shannon… - … England Journal of …, 2009 - Mass Medical Soc
Background The full complement of DNA mutations that are responsible for the pathogenesis
of acute myeloid leukemia (AML) is not yet known. Methods We used massively parallel …

Clonal evolution in relapsed acute myeloid leukaemia revealed by whole-genome sequencing

…, MA Watson, DC Link, MH Tomasson, WD Shannon… - Nature, 2012 - nature.com
Most patients with acute myeloid leukaemia (AML) die from progressive disease after relapse,
which is associated with clonal evolution at the cytogenetic level 1 , 2 . To determine the …

[HTML][HTML] DNMT3A Mutations in Acute Myeloid Leukemia

…, MA Watson, S Heath, WD Shannon… - … England Journal of …, 2010 - Mass Medical Soc
Background The genetic alterations responsible for an adverse outcome in most patients
with acute myeloid leukemia (AML) are unknown. Methods Using massively parallel DNA …

[HTML][HTML] The origin and evolution of mutations in acute myeloid leukemia

…, JR Walker, MA Watson, SE Heath, WD Shannon… - Cell, 2012 - cell.com
Most mutations in cancer genomes are thought to be acquired after the initiating event,
which may cause genomic instability and drive clonal evolution. However, for acute myeloid …

DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome

…, M Watson, J Baty, J Ivanovich, S Heath, WD Shannon… - Nature, 2008 - nature.com
Acute myeloid leukaemia is a highly malignant haematopoietic tumour that affects about
13,000 adults in the United States each year. The treatment of this disease has changed little in …

Patterned progression of bacterial populations in the premature infant gut

…, E Deych, BA Shands, WD Shannon… - Proceedings of the …, 2014 - National Acad Sciences
In the weeks after birth, the gut acquires a nascent microbiome, and starts its transition to
bacterial population equilibrium. This early-in-life microbial population quite likely influences …

Gut bacteria dysbiosis and necrotising enterocolitis in very low birthweight infants: a prospective case-control study

…, JE Sullivan, PG Radmacher, WD Shannon… - The Lancet, 2016 - thelancet.com
Background Gut bacteria might predispose to or protect from necrotising enterocolitis, a severe
illness linked to prematurity. In this observational prospective study we aimed to assess …

Reactivation of multiple viruses in patients with sepsis

…, A Pachot, TL Brooks, E Deych, WD Shannon… - PloS one, 2014 - journals.plos.org
A current controversy is whether patients with sepsis progress to an immunosuppressed
state. We hypothesized that reactivation of latent viruses occurred with prolonged sepsis …

Hypothesis testing and power calculations for taxonomic-based human microbiome data

…, Q Wang, E Sodergren, G Weinstock, WD Shannon - PloS one, 2012 - journals.plos.org
This paper presents new biostatistical methods for the analysis of microbiome data based on
a fully parametric approach using all the data. The Dirichlet-multinomial distribution allows …

In vivo administration of hypomethylating agents mitigate graft-versus-host disease without sacrificing graft-versus-leukemia

…, JL Prior, M Holt, WD Shannon… - Blood, The Journal …, 2010 - ashpublications.org
Regulatory T cells (Tregs) suppress graft-versus-host disease (GVHD) while preserving a
beneficial graft-versus-leukemia (GVL) effect. Thus, their use in allogeneic stem cell …