The MaSuRCA genome assembler

AV Zimin, G Marçais, D Puiu, M Roberts… - …, 2013 - academic.oup.com
… the performance of MaSuRCA against two of the most widely used assemblers for Illumina
… chromosome 16 of the mouse genome. We show that MaSuRCA performs on par or better …

Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm

AV Zimin, D Puiu, MC Luo, T Zhu, S Koren… - Genome …, 2017 - genome.cshlp.org
… The mega-reads software, which is now incorporated into the MaSuRCA assemblerassembler
(version wgs-8.3rc2) in the MaSuRCA mega-reads pipeline to produce an initial assembly

Benchmarking hybrid assembly approaches for genomic analyses of bacterial pathogens using Illumina and Oxford Nanopore sequencing

Z Chen, DL Erickson, J Meng - BMC genomics, 2020 - Springer
… In this work, we thus benchmarked the standalone hybrid assembly pipelines of MaSuRCA,
SPAdes, and Unicycler for Illumina and Oxford Nanopore sequencing of bacterial pathogens …

An Analysis of de Novo Genome Assembly Algorithms

A Anderson, K Cooper - 2024 - digitalcommons.unomaha.edu
… The algorithms for review are: MaSuRCA, SGA, and JR-Assembler. MaSuRCA has maintained
use over the last decade through hybrid assembly techniques and accuracy. SGA was …

Performance Analysis of Bacterial Genome Assemblers Using Illumina Next Generation Sequencing Data

NAM Ishak - 2020 - search.proquest.com
assemblers (SPAdes, ABySS, Velvet and MaSuRCA) is reported, in which variants of de Brujin
graph algorithms are applied, using genomic data … regarding the assemblers running time …

GAGE-B: an evaluation of genome assemblers for bacterial organisms

T Magoc, S Pabinger, S Canzar, X Liu, Q Su… - …, 2013 - academic.oup.com
… Note: Shown are results from MaSuRCA and SPAdes, the two assemblers with the best
performance in this study on a single library, and from Allpaths-LG, which was the best performer …

Versatile genome assembly evaluation with QUAST-LG

A Mikheenko, A Prjibelski, V Saveliev, D Antipov… - …, 2018 - academic.oup.com
… measure for MaSuRCA assembly of Fly MP which outperformed the reference value (100.00
versus 99.67% completeness; marked ‘*’ in the table). The D.melanogaster reference …

24 In Silico Genome Assembly

PP Jutur, A Kumar, M Rehmanji, R Singh… - Methods in …, 2024 - books.google.com
… the optimal assembly based on … genome assembly approach, which has been demonstrated
to be the most successful for hybrid assembly of microalgal genomes using MaSuRCa

Performance analysis of bacterial genome assemblers using illumina next generation sequencing data/Nur 'Ain Mohd Ishak

MI Nur'Ain - 2020 - studentsrepo.um.edu.my
assemblers (SPAdes, ABySS, Velvet and MaSuRCA) is reported, in which variants of de Brujin
graph algorithms are applied, using genomic data … regarding the assemblers running time …

In Silico Genome Assembly and Functional Annotation

PP Jutur, A Kumar, M Rehmanji, R Singh… - Methods in … - taylorfrancis.com
… the optimal assembly based on … genome assembly approach, which has been demonstrated
to be the most successful for hybrid assembly of microalgal genomes using MaSuRCa