The MaSuRCA genome assembler
… the performance of MaSuRCA against two of the most widely used assemblers for Illumina
… chromosome 16 of the mouse genome. We show that MaSuRCA performs on par or better …
… chromosome 16 of the mouse genome. We show that MaSuRCA performs on par or better …
Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm
… The mega-reads software, which is now incorporated into the MaSuRCA assembler… assembler
(version wgs-8.3rc2) in the MaSuRCA mega-reads pipeline to produce an initial assembly …
(version wgs-8.3rc2) in the MaSuRCA mega-reads pipeline to produce an initial assembly …
Benchmarking hybrid assembly approaches for genomic analyses of bacterial pathogens using Illumina and Oxford Nanopore sequencing
… In this work, we thus benchmarked the standalone hybrid assembly pipelines of MaSuRCA,
SPAdes, and Unicycler for Illumina and Oxford Nanopore sequencing of bacterial pathogens …
SPAdes, and Unicycler for Illumina and Oxford Nanopore sequencing of bacterial pathogens …
An Analysis of de Novo Genome Assembly Algorithms
A Anderson, K Cooper - 2024 - digitalcommons.unomaha.edu
… The algorithms for review are: MaSuRCA, SGA, and JR-Assembler. MaSuRCA has maintained
use over the last decade through hybrid assembly techniques and accuracy. SGA was …
use over the last decade through hybrid assembly techniques and accuracy. SGA was …
Performance Analysis of Bacterial Genome Assemblers Using Illumina Next Generation Sequencing Data
NAM Ishak - 2020 - search.proquest.com
… assemblers (SPAdes, ABySS, Velvet and MaSuRCA) is reported, in which variants of de Brujin
graph algorithms are applied, using genomic data … regarding the assemblers running time …
graph algorithms are applied, using genomic data … regarding the assemblers running time …
GAGE-B: an evaluation of genome assemblers for bacterial organisms
T Magoc, S Pabinger, S Canzar, X Liu, Q Su… - …, 2013 - academic.oup.com
… Note: Shown are results from MaSuRCA and SPAdes, the two assemblers with the best
performance in this study on a single library, and from Allpaths-LG, which was the best performer …
performance in this study on a single library, and from Allpaths-LG, which was the best performer …
Versatile genome assembly evaluation with QUAST-LG
… measure for MaSuRCA assembly of Fly MP which outperformed the reference value (100.00
versus 99.67% completeness; marked ‘*’ in the table). The D.melanogaster reference …
versus 99.67% completeness; marked ‘*’ in the table). The D.melanogaster reference …
24 In Silico Genome Assembly
… the optimal assembly based on … genome assembly approach, which has been demonstrated
to be the most successful for hybrid assembly of microalgal genomes using MaSuRCa …
to be the most successful for hybrid assembly of microalgal genomes using MaSuRCa …
Performance analysis of bacterial genome assemblers using illumina next generation sequencing data/Nur 'Ain Mohd Ishak
MI Nur'Ain - 2020 - studentsrepo.um.edu.my
… assemblers (SPAdes, ABySS, Velvet and MaSuRCA) is reported, in which variants of de Brujin
graph algorithms are applied, using genomic data … regarding the assemblers running time …
graph algorithms are applied, using genomic data … regarding the assemblers running time …
In Silico Genome Assembly and Functional Annotation
… the optimal assembly based on … genome assembly approach, which has been demonstrated
to be the most successful for hybrid assembly of microalgal genomes using MaSuRCa …
to be the most successful for hybrid assembly of microalgal genomes using MaSuRCa …
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