User profiles for Robert Kofler

Robert Kofler

PI at Institute of Population Genetics
Verified email at vetmeduni.ac.at
Cited by 6599

Sequencing pools of individuals—mining genome-wide polymorphism data without big funding

C Schlötterer, R Tobler, R Kofler, V Nolte - Nature Reviews Genetics, 2014 - nature.com
The analysis of polymorphism data is becoming increasingly important as a complementary
tool to classical genetic analyses. Nevertheless, despite plunging sequencing costs, …

Combining experimental evolution with next-generation sequencing: a powerful tool to study adaptation from standing genetic variation

C Schlötterer, R Kofler, E Versace, R Tobler… - Heredity, 2015 - nature.com
Evolve and resequence (E&R) is a new approach to investigate the genomic responses to
selection during experimental evolution. By using whole genome sequencing of pools of …

PoPoolation: a toolbox for population genetic analysis of next generation sequencing data from pooled individuals

R Kofler, P Orozco-terWengel, N De Maio, RV Pandey… - PloS one, 2011 - journals.plos.org
Recent statistical analyses suggest that sequencing of pooled samples provides a cost effective
approach to determine genome-wide population genetic parameters. Here we introduce …

Genetic redundancy fuels polygenic adaptation in Drosophila

…, F Mallard, KA Otte, M Dolezal, T Taus, R Kofler… - PLoS …, 2019 - journals.plos.org
The genetic architecture of adaptive traits is of key importance to predict evolutionary
responses. Most adaptive traits are polygenic—ie, result from selection on a large number of …

Evolutionary genomics can improve prediction of species' responses to climate change

…, M Exposito-Alonso, C Rellstab, R Kofler… - Evolution …, 2020 - academic.oup.com
Global climate change (GCC) increasingly threatens biodiversity through the loss of species,
and the transformation of entire ecosystems. Many species are challenged by the pace of …

PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)

R Kofler, RV Pandey, C Schlötterer - Bioinformatics, 2011 - academic.oup.com
Sequencing pooled DNA samples (Pool-Seq) is the most cost-effective approach for the
genome-wide comparison of population samples. Here, we introduce PoPoolation2, the first …

Genome‐wide patterns of latitudinal differentiation among populations of Drosophila melanogaster from North America

DK Fabian, M Kapun, V Nolte, R Kofler… - Molecular …, 2012 - Wiley Online Library
Understanding the genetic underpinnings of adaptive change is a fundamental but largely
unresolved problem in evolutionary biology. D rosophila melanogaster, an ancestrally tropical …

SciRoKo: a new tool for whole genome microsatellite search and investigation

R Kofler, C Schlötterer, T Lelley - Bioinformatics, 2007 - academic.oup.com
SciRoKo is a user-friendly software tool for the identification of microsatellites in genomic
sequences. The combination of an extremely fast search algorithm with a built-in summary …

Sequencing of Pooled DNA Samples (Pool-Seq) Uncovers Complex Dynamics of Transposable Element Insertions in Drosophila melanogaster

R Kofler, AJ Betancourt, C Schlötterer - PLoS genetics, 2012 - journals.plos.org
Transposable elements (TEs) are mobile genetic elements that parasitize genomes by semi-autonomously
increasing their own copy number within the host genome. While TEs are …

The recent invasion of natural Drosophila simulans populations by the P-element

R Kofler, T Hill, V Nolte… - Proceedings of the …, 2015 - National Acad Sciences
The P-element is one of the best understood eukaryotic transposable elements. It invaded
Drosophila melanogaster populations within a few decades but was thought to be absent from …