| Assembly of long, error-prone reads using repeat graphs M Kolmogorov, J Yuan, Y Lin, PA Pevzner Nature biotechnology 37 (5), 540-546, 2019 | 3724 | 2019 |
| Assembly of long error-prone reads using de Bruijn graphs Y Lin, J Yuan, M Kolmogorov, MW Shen, M Chaisson, PA Pevzner Proceedings of the National Academy of Sciences 113 (52), E8396-E8405, 2016 | 340 | 2016 |
| In silico spectral libraries by deep learning facilitate data-independent acquisition proteomics Y Yang, X Liu, C Shen, Y Lin, P Yang, L Qiao Nature communications 11 (1), 146, 2020 | 218 | 2020 |
| Targeted mRNA demethylation using an engineered dCas13b-ALKBH5 fusion protein J Li, Z Chen, F Chen, G Xie, Y Ling, Y Peng, Y Lin, N Luo, CM Chiang, ... Nucleic acids research 48 (10), 5684-5694, 2020 | 199 | 2020 |
| MLGO: phylogeny reconstruction and ancestral inference from gene-order data F Hu, Y Lin, J Tang BMC bioinformatics 15, 1-6, 2014 | 115 | 2014 |
| A metric for phylogenetic trees based on matching Y Lin, V Rajan, BME Moret IEEE/ACM Transactions on Computational Biology and Bioinformatics 9 (4 …, 2011 | 109 | 2011 |
| An exact algorithm to compute the double-cut-and-join distance for genomes with duplicate genes M Shao, Y Lin, BME Moret Journal of Computational Biology 22 (5), 425-435, 2015 | 91 | 2015 |
| Modeling dynamic heterogeneous network for link prediction using hierarchical attention with temporal rnn H Xue, L Yang, W Jiang, Y Wei, Y Hu, Y Lin Machine Learning and Knowledge Discovery in Databases: European Conference …, 2021 | 85 | 2021 |
| GraphBin: refined binning of metagenomic contigs using assembly graphs V Mallawaarachchi, A Wickramarachchi, Y Lin Bioinformatics 36 (11), 3307-3313, 2020 | 79 | 2020 |
| Morphological stasis masks ecologically divergent coral species on tropical reefs P Bongaerts, IR Cooke, H Ying, D Wels, S den Haan, ... Current Biology 31 (11), 2286-2298. e8, 2021 | 69 | 2021 |
| Direct MALDI-TOF MS identification of bacterial mixtures Y Yang, Y Lin, L Qiao Analytical chemistry 90 (17), 10400-10408, 2018 | 66 | 2018 |
| Estimating true evolutionary distances under the DCJ model Y Lin, BME Moret Bioinformatics 24 (13), i114-i122, 2008 | 66 | 2008 |
| Generation and characterization of stable pig pregastrulation epiblast stem cell lines M Zhi, J Zhang, Q Tang, D Yu, S Gao, D Gao, P Liu, J Guo, T Hai, J Gao, ... Cell Research 32 (4), 383-400, 2022 | 65 | 2022 |
| Maximum likelihood phylogenetic reconstruction from high-resolution whole-genome data and a tree of 68 eukaryotes Y Lin, F Hu, J Tang, BME Moret The Pacific Symposium on Biocomputing 2013, 285-296, 2013 | 65 | 2013 |
| Noncontact three-dimensional diffuse optical imaging of deep tissue blood flow distribution G Yu, Y Lin, C Huang US Patent 9,861,319, 2018 | 60 | 2018 |
| Sorting signed permutations by inversions in O (n log n) time KM Swenson, V Rajan, Y Lin, BME Moret Journal of Computational Biology 17 (3), 489-501, 2010 | 49 | 2010 |
| Approximating the edit distance for genomes with duplicate genes under DCJ, insertion and deletion M Shao, Y Lin BMC bioinformatics 13 (Suppl 19), S13, 2012 | 48 | 2012 |
| Dynamic transcriptome and chromatin architecture in granulosa cells during chicken folliculogenesis D Li, C Ning, J Zhang, Y Wang, Q Tang, H Kui, T Wang, M He, L Jin, J Li, ... Nature Communications 13 (1), 131, 2022 | 43 | 2022 |
| Multiplex bipartite network embedding using dual hypergraph convolutional networks H Xue, L Yang, V Rajan, W Jiang, Y Wei, Y Lin Proceedings of the Web Conference 2021, 1649-1660, 2021 | 43 | 2021 |
| Detection and analysis of ancient segmental duplications in mammalian genomes L Pu, Y Lin, PA Pevzner Genome research 28 (6), 901-909, 2018 | 43 | 2018 |
Bernard M.E. MoretISCB Fellow, Professor emeritus, Computer & Communication Sciences, EPFLVerified email at epfl.ch
