Li S - Search Results

1

An engineered ACE2 decoy neutralizes the SARS-CoV-2 Omicron variant and confers protection against infection in vivo.

Ikemura N, Taminishi S, Inaba T, Arimori T, Motooka D, Katoh K, Kirita Y, Higuchi Y, Li S, Suzuki T, Itoh Y, Ozaki Y, Nakamura S, Matoba S, Standley DM, Okamoto T, Takagi J, Hoshino A. Ikemura N, et al. Among authors: li s. Sci Transl Med. 2022 Jun 22;14(650):eabn7737. doi: 10.1126/scitranslmed.abn7737. Epub 2022 Jun 22. Sci Transl Med. 2022. PMID: 35471044 Free PMC article.

2

A novel protein distance matrix based on the minimum arc-length between two amino-acid residues on the surface of a globular protein.

Hall D, Li S, Yamashita K, Azuma R, Carver JA, Standley DM. Hall D, et al. Among authors: li s. Biophys Chem. 2014 Jun;190-191:50-5. doi: 10.1016/j.bpc.2014.01.005. Epub 2014 Feb 13. Biophys Chem. 2014. PMID: 24589301

3

Quantifying sequence and structural features of protein-RNA interactions.

Li S, Yamashita K, Amada KM, Standley DM. Li S, et al. Nucleic Acids Res. 2014 Sep;42(15):10086-98. doi: 10.1093/nar/gku681. Epub 2014 Jul 25. Nucleic Acids Res. 2014. PMID: 25063293 Free PMC article.

4

RNA-LIM: a novel procedure for analyzing protein/single-stranded RNA propensity data with concomitant estimation of interface structure.

Hall D, Li S, Yamashita K, Azuma R, Carver JA, Standley DM. Hall D, et al. Among authors: li s. Anal Biochem. 2015 Mar 1;472:52-61. doi: 10.1016/j.ab.2014.11.004. Epub 2014 Dec 3. Anal Biochem. 2015. PMID: 25479604

5

TLR4-induced NF-κB and MAPK signaling regulate the IL-6 mRNA stabilizing protein Arid5a.

Nyati KK, Masuda K, Zaman MM, Dubey PK, Millrine D, Chalise JP, Higa M, Li S, Standley DM, Saito K, Hanieh H, Kishimoto T. Nyati KK, et al. Among authors: li s. Nucleic Acids Res. 2017 Mar 17;45(5):2687-2703. doi: 10.1093/nar/gkx064. Nucleic Acids Res. 2017. PMID: 28168301 Free PMC article.

6

Structural basis for the assembly of the Ragulator-Rag GTPase complex.

Yonehara R, Nada S, Nakai T, Nakai M, Kitamura A, Ogawa A, Nakatsumi H, Nakayama KI, Li S, Standley DM, Yamashita E, Nakagawa A, Okada M. Yonehara R, et al. Among authors: li s. Nat Commun. 2017 Nov 20;8(1):1625. doi: 10.1038/s41467-017-01762-3. Nat Commun. 2017. PMID: 29158492 Free PMC article.

7

Clonal evolution and antigen recognition of anti-nuclear antibodies in acute systemic lupus erythematosus.

Sakakibara S, Arimori T, Yamashita K, Jinzai H, Motooka D, Nakamura S, Li S, Takeda K, Katayama J, El Hussien MA, Narazaki M, Tanaka T, Standley DM, Takagi J, Kikutani H. Sakakibara S, et al. Among authors: li s. Sci Rep. 2017 Nov 27;7(1):16428. doi: 10.1038/s41598-017-16681-y. Sci Rep. 2017. PMID: 29180749 Free PMC article.

8

MAFFT-DASH: integrated protein sequence and structural alignment.

Rozewicki J, Li S, Amada KM, Standley DM, Katoh K. Rozewicki J, et al. Among authors: li s. Nucleic Acids Res. 2019 Jul 2;47(W1):W5-W10. doi: 10.1093/nar/gkz342. Nucleic Acids Res. 2019. PMID: 31062021 Free PMC article.

9

Structural Determinants of the APOBEC3G N-Terminal Domain for HIV-1 RNA Association.

Fukuda H, Li S, Sardo L, Smith JL, Yamashita K, Sarca AD, Shirakawa K, Standley DM, Takaori-Kondo A, Izumi T. Fukuda H, et al. Among authors: li s. Front Cell Infect Microbiol. 2019 May 21;9:129. doi: 10.3389/fcimb.2019.00129. eCollection 2019. Front Cell Infect Microbiol. 2019. PMID: 31165049 Free PMC article.

10

Structural Modeling of Lymphocyte Receptors and Their Antigens.

Li S, Wilamowski J, Teraguchi S, van Eerden FJ, Rozewicki J, Davila A, Xu Z, Katoh K, Standley DM. Li S, et al. Methods Mol Biol. 2019;2048:207-229. doi: 10.1007/978-1-4939-9728-2_17. Methods Mol Biol. 2019. PMID: 31396940

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