Table 1.
Statistics of tandem duplicated genes of genome-sequenced plant species in PTGBase
| Latin name | Common name | Genome size | Gene number | Number of TD genes | Number of TD clusters | Release version |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | Lyraterockcress | 206.7M | 32 670 | 3609 | 1485 | Version 1.0 (Apr 2011) |
| Arabidopsis thaliana | Arabidopsis | 125M | 35 386 | 3503 | 1383 | TAIR 9.0 (Jun 2009) |
| Aureococcus anophagefferens | Heterokont algae | 57M | 11 501 | 176 | 84 | JGI 1.0 (Sep 2007) |
| Brachypodium distachyon | Purple false brome | 260M | 31 029 | 3233 | 1326 | Phytozome v6.0 |
| Brassica oleracea | Cabbage | 630M | 45 758 | 3443 | 1514 | Version 1.0 |
| Brassica rapa | Chinese cabbage | 485M | 41 173 | 4501 | 1918 | Version 1.1 |
| Cajanus cajan | Pigeonpea | 833M | 48 680 | 3837 | 1736 | IIPG v1.0 |
| Carica papaya | Papaya | 370M | 27 950 | 1937 | 822 | ASGPB v1.0 |
| Chlamydomonas reinhardtii | Green algae | 130M | 17 113 | 1220 | 521 | Version 4.2 |
| Chlorella variabilis NC64A | Microalgae | 46M | 9 791 | 451 | 207 | JGI 1.0 (Sep 2010) |
| Cicer arietinum | Chickpea | 738M | 28 269 | 1396 | 610 | Version 1.0 |
| Citrullus lanatus | Watermelon | 425M | 23 440 | 2248 | 863 | Version 1.0 |
| Citrus sinensis | Orange | 367M | 36 450 | 3253 | 1261 | CITRUS v1.0 (2012) |
| Cucumissativus | Cucumber | 350M | 26 682 | 2077 | 830 | Phytozome v6.0 |
| Fragariavesca | Strawberry | 240M | 34 809 | 3823 | 1582 | GDR v1.0 |
| Glycine max | Soybean | 1,100M | 75 778 | 5764 | 2384 | v1.1 (Jun 2013) |
| Gossypium raimondii | Cotton | 761.4M | 40 976 | 4674 | 1866 | Version 2.1 |
| Linum usitatissimum | Flax | 373M | 43 484 | 4169 | 1823 | Phytozome v9.1 v1.0 |
| Lotus japonicus | Lotus | 472M | 42 399 | 1211 | 543 | Release 2.5 |
| Malus × domestica Borkh. | Apple | 742M | 63 541 | 16 602 | 6638 | GDR v1.0 |
| Medicago truncatula | Barrel medic | 500M | 53 423 | 3761 | 1653 | Mt3.5 v3 (Jun 2011) |
| Musa acuminata | Banana | 523M | 36 549 | 1352 | 571 | CIRAD v1.0 |
| Oryza sativa L. ssp.japonica | Rice | 466M | 67 393 | 4544 | 1931 | IRGSP v1.0 |
| Phaeodactylum tricornutum | Diatom algae | 27.4M | 10 402 | 440 | 206 | JGI 2.0 (May 2007) |
| Physcomitrella patens | Moss | 480M | 38 354 | 797 | 381 | Version 1.6 (Jan 2008) |
| Populus trichocarpa | Western poplar | 480M | 45 033 | 5224 | 2084 | JGI 2.0 (Feb 2010) |
| Prunus mume | Plum flower | 280M | 31 390 | 5059 | 1985 | prunusmumegenome v1.0 |
| Ricinus communis | Castor bean | 350M | 31 221 | 2613 | 1075 | Release 0.1 (May 2008) |
| Selaginella moellendorffii | Selaginella | 212M | 22 285 | 1676 | 748 | Version 1.0 (Dec 2007) |
| Sesamum indicum | Sesame | 357M | 27 148 | 2848 | 1126 | Version 1.0 |
| Setaria italica | Millet | 490M | 38 801 | 4879 | 2027 | Phytozome v9.1 |
| Solanum lycopersicum | Tomato | 900M | 34 727 | 4173 | 1640 | Version 2.3 |
| Solanum tuberosum | Potato | 844M | 39 031 | 4504 | 1839 | Version 3.4 |
| Sorghum bicolor | Sorghum | 730M | 29 448 | 4256 | 1664 | Sbi 1.4 (Dec 2007) |
| Thellugiella parvula | Rockface star-violet | 140M | 27 132 | 2316 | 980 | Thellungiella v2.0 |
| Theobroma cacao | Cacao | 430M | 46 143 | 3867 | 1604 | Release 0.9 (Sep 2010) |
| Vitis vinifera | Grape vine | 490M | 26 346 | 3668 | 1405 | Genoscope (Aug 2007) |
| Volvox carteri | Green alga | 138M | 15 285 | 1402 | 595 | JGI 1.0 (Jun 2007) |
| Zea mays ssp. mays L. | Maize | 2300M | 63 293 | 2837 | 1220 | Release 5a (Nov 2010) |
TD, tandem duplicated.