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WO2010000031A1 - Imidazopyrimidinones and uses thereof - Google Patents

Imidazopyrimidinones and uses thereof Download PDF

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Publication number
WO2010000031A1
WO2010000031A1 PCT/AU2009/000857 AU2009000857W WO2010000031A1 WO 2010000031 A1 WO2010000031 A1 WO 2010000031A1 AU 2009000857 W AU2009000857 W AU 2009000857W WO 2010000031 A1 WO2010000031 A1 WO 2010000031A1
Authority
WO
WIPO (PCT)
Prior art keywords
oxo
imidazo
fluoro
ethyl
thiazol
Prior art date
Application number
PCT/AU2009/000857
Other languages
French (fr)
Inventor
John Joseph Deadman
Eric Dale Jones
Giang Thanh Le
David Ian Rhodes
Neeranat Thienthong
Nicholas Andrew Van De Graff
Lisa Jane Winfield
Original Assignee
Avexa Limited
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from AU2008903406A external-priority patent/AU2008903406A0/en
Application filed by Avexa Limited filed Critical Avexa Limited
Priority to EP09771848.0A priority Critical patent/EP2291377B1/en
Priority to US12/734,042 priority patent/US8431581B2/en
Priority to CA2729656A priority patent/CA2729656A1/en
Priority to JP2011515027A priority patent/JP5592360B2/en
Publication of WO2010000031A1 publication Critical patent/WO2010000031A1/en

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Classifications

    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D487/00Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, not provided for by groups C07D451/00 - C07D477/00
    • C07D487/02Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, not provided for by groups C07D451/00 - C07D477/00 in which the condensed system contains two hetero rings
    • C07D487/04Ortho-condensed systems
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • A61P31/12Antivirals
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • A61P31/12Antivirals
    • A61P31/14Antivirals for RNA viruses
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • A61P31/12Antivirals
    • A61P31/14Antivirals for RNA viruses
    • A61P31/18Antivirals for RNA viruses for HIV

Definitions

  • the present invention relates to a class of compounds useful in the treatment of viral infections, particularly HIV infections which show resistance to known HIV inhibitors.
  • HIV human immunodeficiency virus
  • a feature of retrovirus replication includes the reverse transcription of the viral genome into proviral DNA and its integration into the host cell genome. These steps are required for HIV replication and are mediated by the virus encoded enzymes, reverse transcriptase and integrase respectively.
  • HIV infection follows a path of the virus particle binding to cell surface receptors and co-receptors resulting in fusion of the virus particle with the cell.
  • the contents of the virus are released into the cytoplasm where reverse transcription of the HIV genome occurs.
  • a double stranded proviral DNA copy is produced.
  • the proviral DNA is transported to the nucleus in a complex known as the pre integration complex (PIC) which contains integrase and other viral and possibly cellular proteins.
  • PIC pre integration complex
  • Once inside the nucleus the proviral DNA is integrated into the host cell genome via the action of integrase. Once integrated, transcription and translation of the viral genome can occur resulting in the production of viral proteins and a new viral RNA genome. These proteins and genome assemble at the cell surface and, depending on cell type, possibly other intracellular membranous compartments.
  • Assembled particles then bud out from the cell and during, or soon after, this process mature into infectious HIV particles through the action of the viral protease.
  • the integration of the proviral genome into the host cell genome requires the action of an integrase which carries out this process in at least three steps, possibly four.
  • the first step involves the assembly of the viral genome into a stable nucleoprotein complex, secondly, processing of two nucleotides from the 3' termini of the genome to give staggered ends with free 3' OH residues and thirdly the transfer of these ends into the host cell genome.
  • the final step involves the gap filling and repair of the insertion site in the host genome. There is still some conjecture over whether the integrase performs this final step or whether it is carried out by cellular repair enzymes.
  • HIV infection can be treated with a number of inhibitors on the market which target reverse transcriptase, protease or entry into the cell. Treatment of HIV infection with these, or a combination of these, drugs is known to be an effective treatment for AIDS and similar diseases. Shortcomings with the current inhibitors include the rapid emergence and increase incidence of resistance and numerous side effects.
  • Certain mutations within the wild-type viral integrase enzyme are known to confer resistance to a number of known integration inhibitors published in the literature.
  • the viral variants containing Q148H/G140S double mutation in integrase and the N155H/E92Q double mutation in integrase represent the two of the more common viruses identified that are failing treatment with Isentress (Raltegravir, MK-0518).
  • the triple mutant Q 148K/G 140 A/E 138 A is also resistant to Raltegravir.
  • the present invention provides a compound of Formula I or a pharmaceutically acceptable derivative, salt or prodrug thereof wherein:
  • Li-Ri is hydrogen or is a substituent wherein
  • each Ri is independently selected from the group consisting of hydrogen, Ci.ioalkyl wherein one or more of the carbon atoms of the alkyl chain may optionally be replaced with oxygen atoms, C 1-10 alkylNR 3 R 4 , halo, NR 3 R 4 , alkylaryl, alkylheteroaryl, a 4-7 membered lactam, S(O)NR 3 R 4 , SO 2 NR 3 R 4 , S0 2 Ci.ioalkyl, C 5- i 0 cycloalkyl wherein one or more of the carbon atoms of the cycloalkyl ring are replaced with one or more oxygen atoms;
  • R 3 and R 4 are each independently selected from the group consisting of hydrogen, C MO alkyl, C 3-6 cycloalkyl, Ci -I0 NR 5 R 6 , -(CO)(CO)NR 5 R 6 ; or R 3 and R 4 taken together with the attached nitrogen form a 5-7 membered heterocyclic ring which contains zero to two additional heteroatoms selected from N, O or S where S can be at the S, S(O) or S(O) 2 oxidation state and wherein said heterocyclic ring is optionally substituted at the carbon or nitrogen atoms with one or more substituents selected from halo, C 1-4 alkyl, CO 2 C 1-4 alkyl, NR 5 R 6 ; C M aIlCyINR 5 R 6 and further wherein two carbons of said 5-7 membered heterocyclic ring may optionally be bridged by a C 1-3 alkylene bridging group;
  • R 5 and R 6 are each independently selected from the group consisting of H and or R 5 and R 6 together with the attached nitrogen form a
  • heterocyclic ring which contains zero to two additional heteroatoms selected from N, O or S where S can be at the S, S(O) or S(O) 2 oxidation state and wherein said heterocyclic ring is optionally substituted at the carbon or nitrogen atoms with one or more substituents selected from halo and C 1-4 alkyl and further wherein two carbons of said
  • 5-7 membered heterocyclic ring may optionally be bridged by a C 1-3 alkylene bridging group
  • L 4 -R 11 is 0-2 substituents wherein:
  • each R 11 is independently selected from the group consisting of hydrogen, C 1-10 alkyl wherein one or more of the carbon atoms of the alkyl chain may optionally be replaced with oxygen atoms, Cj.ioalkyl where one of the carbon atoms is replaced by S in the S, S(O), or S(O) 2 oxidation state, C 1-10 alkylNR 3 R 4 , halo, NR 3 R 4 , alkylaryl, S(O)NR 3 R 4 , SO 2 NR 3 R 4 , SO 2 C M0 alkyl, and C 5-10 cycloalkyl wherein one or more of the carbon atoms of the cycloalkyl ring are replaced with one or more oxygen atoms;
  • Rj 1 when Rj 1 is alkylaryl, the aryl group of said alkylaryl substituent is optionally substituted with a substituent selected from C 1-10 alkyl, -O-Ci-ioalkyl, CMoalkylNR ⁇ sR,, -O-Ci -10 alkylNR 3 R4, halo, NR 3 R 4 , alkylaryl, -O-alkylaryl, SO 2 NR 3 R 4
  • L 2 -R 7 is 0-2 substituents wherein:
  • each R 7 is independently selected from the group consisting of hydrogen, Ci. 10 alkyl wherein one or more of the carbon atoms of the alkyl chain may optionally be replaced with oxygen atoms, C 1-1O aIlCyINR 3 R 4 , halo, NR3R4, alkylaryl, S(O)NR 3 R 4 , SO 2 NR 3 R 4 , SO 2 C 1-10 alkyl, and C 5-10 cycloalkyl wherein one or more of the carbon atoms of the cycloalkyl ring are replaced with one or more oxygen atoms;
  • X is CR 8 Rg'
  • each ofR 8 and R 8 - is independently selected from the group consisting of H and CH 3 , preferably H;
  • H 2 is a 5- or 6-membered saturated, partially saturated or aromatic ring containing between 0 and 4 heteroatoms independently selected from the group consisting of N, O and S;
  • L 3 -R 9 is 0-3 substituents wherein:
  • each R 9 is independently selected from the group consisting of hydrogen, Ci -10 alkyl wherein one or more of the carbon atoms of the alkyl chain may optionally be replaced with oxygen atoms, C 1-1O aIIiCyINR 3 R 4 , halo, NR 3 R 4 , heterocyclyl, heteroaryl, alkylaryl, S(O)NR 3 R 4 , SO 2 NR 3 R 4 , SO 2 Ci-i 0 alkyl, and C 5 -i 0 cycloalkyl wherein one or more of the carbon atoms of the cycloalkyl ring are replaced with one or more oxygen atoms.
  • the present invention provides a method of treatment or prophylaxis of a viral infection in a subject comprising administering to said subject an effective amount of a compound of formula (I) or a pharmaceutically acceptable derivative, salt or prodrug thereof.
  • a compound of Formula I or a pharmaceutically acceptable derivative, salt or prodrug thereof in the preparation of a medicament for the treatment or prophylaxis of a viral infection in a subject.
  • the present invention provides pharmaceutical composition
  • a pharmaceutically acceptable carrier, diluent or excipient comprising a compound according to the first aspect and a pharmaceutically acceptable carrier, diluent or excipient.
  • the present invention provides a compound of Formula I or a pharmaceutically acceptable derivative, salt or prodrug thereof wherein:
  • L]-R 1 is hydrogen or is a substituent wherein
  • each Z is independently selected from O, S, and NH;
  • each R 1 is independently selected from the group consisting of hydrogen, Ci-ioalkyl wherein one or more of the carbon atoms of the alkyl chain may optionally be replaced with oxygen atoms, C] -IO aIlCyINR 3 R 4 , halo, NR 3 R 4 , alkylaryl, alkylheteroaryl, a 4-7 membered lactam, S(O)NR 3 R 4 , SO 2 NR 3 R 4 , SO 2 Ci -10 alkyl, C 5-10 cycloalkyl wherein one or more of the carbon atoms of the cycloalkyl ring are replaced with one or more oxygen atoms;
  • R 3 and R 4 are each independently selected from the group consisting of hydrogen, C 1-10 alkyl, C 3-6 cycloalkyl, C 1-10 NR 5 R 6 , -(CO)(CO)NR 5 R 6 ; or R 3 and R 4 taken together with the attached nitrogen form a 5-7 membered heterocyclic ring which contains zero to two additional heteroatoms selected from N, O or S where S can be at the S, S(O) or S(O) 2 oxidation state and wherein said heterocyclic ring is optionally substituted at the carbon or nitrogen atoms with one or more substituents selected from halo, C ⁇ alkyl, CO 2 C 1- 4alkyl, NR 5 R 6 ; C M aUXyINR 5 R 6 and further wherein two carbons of said 5-7 membered heterocyclic ring may optionally be bridged by a Cj -3 alkylene bridging group;
  • R 5 and R 6 are each independently selected from the group consisting of H and Ci ⁇ alkyl or R 5 and R 6 together with the attached nitrogen form a 5-7 membered heterocyclic ring which contains zero to two additional heteroatoms selected from N, O or S where S can be at the S, S(O) or
  • heterocyclic ring is optionally substituted at the carbon or nitrogen atoms with one or more substituents selected from halo and Ci ⁇ alkyl and further wherein two carbons of said 5-7 membered heterocyclic ring may optionally be bridged by a Ci -3 alkylene bridging group;
  • each Rn is independently selected from the group consisting of hydrogen, Ci.ioalkyl wherein one or more of the carbon atoms of the alkyl chain may optionally be replaced with oxygen atoms, Cj.ioalkyl where one of the carbon atoms is replaced by S in the S, S(O), or S(O) 2 oxidation state, Ci -]0 alkylNR 3 R 4 , halo, NR 3 R 4 , alkylaryl, S(O)NR 3 R 4 , SO 2 NR 3 R 4 , S0 2 C,.ioalkyl, and
  • L 2 -R 7 is 0-2 substituents wherein:
  • each Z is independently selected from O, S, and NH;
  • each R 7 is independently selected from the group consisting of hydrogen, Ci -10 alkyl wherein one or more of the carbon atoms of the alkyl chain may optionally be replaced with oxygen atoms, C 1-1O aIlCyINR 3 R 4 , halo, NR 3 R 4 , alkylaryl, S(O)NR 3 R 4 , SO 2 NR 3 R 4 , S0 2 C M oalkyl, and C 5- i 0 cycloalkyl wherein one or more of the carbon atoms of the cycloalkyl ring are replaced with one or more oxygen atoms;
  • X is CR 8 R 8 -
  • each of Rg and Rg> is independently selected from the group consisting of H and CH 3 , preferably H;
  • H 2 is a 5- or 6-membered saturated, partially saturated or aromatic ring containing between 0 and 4 heteroatoms independently selected from the group consisting of N, O and S;
  • L 3 -R 9 is 0-3 substituents wherein:
  • Hi is a five membered aromatic heterocycle selected from the group consisting of thiazole, oxazole, oxadiazole, thiadiazole, imidazole, triazole, and tetrazole.
  • Hi is thiazole.
  • H 2 is phenyl
  • L 4 -Ri 1 is one substituent wherein L 4 is absent or is -CH 2 - and Ri 1 is NR 3 R 4 .
  • L 3 -R 9 is one or two substituents wherein each L 3 -R 9 is halo.
  • At least one NR 3 R 4 is independently selected from the group consiting of morpholino, a five-membered cyclic sulphonamide (such as isothiazolidine) and a six membered cyclic sulphonamide.
  • the group "Ci.i O alkyl where one of the carbon atoms is replaced by S in the S, S(O), or S(O) 2 oxidation state” is methylsulfanylmethyl or methylsulfonylmethyl.
  • LiRi is not hydrogen and L 4 -Rn is at least one substituent.
  • L 4 -R 11 is a cyclic sulphonamide.
  • the compound is selected from the group consisting of:
  • halo or halogen refers to fluorine (fluoro), chlorine (chloro), bromine (bromo) or iodine (iodo).
  • alkyl and alkylene either used alone or in compound terms such as NH(alkyl) or N(alkyl) 2 , refer respectively to monovalent and divalent straight chain or branched hydrocarbon groups, having 1 to 3, 1 to 6, or 1 to 10 carbon atoms as appropriate.
  • suitable alkyl groups include, but are not limited to methyl, ethyl, propyl, isopropyl, n-butyl, sec-butyl, tert-butyl, pentyl, 2-methylbutyl, 3-methylbutyl, n-hexyl, 2-, 3- or 4-methylpentyl, 2-ethylbutyl, n-hexyl or 2-, 3-, 4- or 5-methylpentyl.
  • alkenyl refers to a straight chain or branched hydrocarbon groups having one or more double bonds between carbon atoms. Suitable alkenyl groups include, but are not limited to, ethenyl, allyl, propenyl, iso-propenyl, butenyl, pentenyl and hexenyl.
  • cycloalkyl refers to cyclic hydrocarbon groups. Suitable cycloalkyl groups include, but are not limited to cyclopropyl, cyclobutyl, cyclopentyl and cyclohexyl.
  • aryl refers to a C 6 -C] 0 aromatic hydrocarbon group, for example phenyl or naphthyl.
  • alkylaryl includes, for example, benzyl.
  • heterocycle when used alone or in compound words includes monocyclic, polycyclic, fused or conjugated hydrocarbon residues, preferably C 3-6 , wherein one or more carbon atoms (and where appropriate, hydrogen atoms attached thereto) are replaced by a heteroatom so as to provide a non-aromatic residue.
  • the bonds between atoms may be saturated or unsaturated.
  • Suitable heteroatoms include, O, N and S. Where two or more carbon atoms are replaced, this may be by two or more of the same heteroatom or by different heteroatoms.
  • heterocyclic groups may include pyrrolidinyl, piperidyl, piperazinyl, morpholino, quinolinyl, isoquinolinyl, thiomorpholino, dioxanyl, 2,2'-dimethyl-[l,3]-dioxolanyl, tetrahydrofuranyl, tetrahydropyranyl, tetrahydropyrrolyl etc.
  • heteroaryl includes a 5- or 6-membered heteroaromatic ring containing one or more heteroatoms selected from O, N and S.
  • Suitable examples of heteroaryl groups include furanyl, thiophenyl, tetrazolyl, 1,2,3-triazolyl, 1 ,2,4-triazolyl, imidazolyl, pyrazolyl, pyridinyl, pyrimidinyl, oxazolyl, oxadiazolyl, thioazolyl, thiodiazolyl etc.
  • the heteroaromatic ring may be fused to a 5- or 6-membered aromatic or heteroaromatic ring to form a bicyclic aromatic ring system eg benzofuran.
  • each alkyl, alkylene, cycloalkyl, alkylaryl, aryl, heterocyclyl, or heteroaryl group may be optionally substituted with one or more of Ci-C 3 alkyl, C 3 - Qcycloalkyl, C 6 aryl, heterocyclyl, heteroaryl, CpCaalkylOH, alkylaryl, OH, OCi-C 3 alkyl, halo, CN, NO 2 , CO 2 H, CO 2 Ci.C 3 alkyl, CONH 2 , CONH(C, .C 3 alkyl), CON(Ci.C 3 alkyl) 2 , trifluoromethyl, NH 2 , NH(C 1- C 3 alkyl) or N(C 1- C 3 alkyl) 2 .
  • an optionally substituted aryl group may be 4-methylphenyl or 4-hydroxyphenyl group
  • an optionally substituted alkyl group may be 2-hydroxyethyl, trifluoromethyl, or difluoromethyl.
  • Each optional alkyl, cycloalkyl, alkylaryl, aryl, heterocyclyl, or heteroaryl substituent may also be optionally substituted.
  • optional substituents also include suitable nitrogen protecting groups (see “Protective Groups in Organic Synthesis” Theodora Greene and Peter Wuts, third edition, Wiley Interscience, 1999).
  • salts of the compound of formula I are preferably pharmaceutically acceptable, but it will be appreciated that non-pharmaceutically acceptable salts also fall within the scope of the present invention, since these are useful as intermediates in the preparation of pharmaceutically acceptable salts.
  • pharmaceutically acceptable derivative may include any pharmaceutically acceptable salt, hydrate or prodrug, or any other compound which upon administration to a subject, is capable of providing (directly or indirectly) a compound of formula I or an antibacterially active metabolite or residue thereof.
  • Suitable pharmaceutically acceptable salts include, but are not limited to, salts of pharmaceutically acceptable inorganic acids such as hydrochloric, sulphuric, phosphoric, nitric, carbonic, boric, sulfamic, and hydrobromic acids, or salts of pharmaceutically acceptable organic acids such as acetic, propionic, butyric, tartaric, maleic, hydroxymaleic, fumaric, malic, citric, lactic, mucic, gluconic, benzoic, succinic, oxalic, phenylacetic, methanesulphonic, toluenesulphonic, benzenesulphonic, salicylic, sulphanilic, aspartic, glutamic, edetic, stearic, palmitic, oleic, lauric, pantothenic, tannic, ascorbic and valeric acids.
  • pharmaceutically acceptable inorganic acids such as hydrochloric, sulphuric, phosphoric, n
  • Base salts include, but are not limited to, those formed with pharmaceutically acceptable cations, such as sodium, potassium, lithium, calcium, magnesium, zinc, ammonium, alkylammonium such as salts formed from triethylamine, alkoxyammonium such as those formed with ethanolamine and salts formed from ethylenediamine, choline or amino acids such as arginine, lysine or histidine.
  • pharmaceutically acceptable cations such as sodium, potassium, lithium, calcium, magnesium, zinc, ammonium, alkylammonium such as salts formed from triethylamine, alkoxyammonium such as those formed with ethanolamine and salts formed from ethylenediamine, choline or amino acids such as arginine, lysine or histidine.
  • Basic nitrogen-containing groups may be quarternised with such agents as lower alkyl halide, such as methyl, ethyl, propyl, and butyl chlorides, bromides and iodides; dialkyl sulfates like dimethyl and diethyl sulfate; and others.
  • lower alkyl halide such as methyl, ethyl, propyl, and butyl chlorides, bromides and iodides
  • dialkyl sulfates like dimethyl and diethyl sulfate; and others.
  • Hydroxyl groups may be esterified with groups including lower alkyl carboxylic acids, such as acetic acid and 2,2-dimethylpropionic acid, or sulfonated with groups including alkyl sulfonic acids, such as methyl sulfonic acid
  • This invention also encompasses pharmaceutical compositions containing prodrugs of compounds of formula I.
  • This invention also encompasses methods of treating or preventing a viral infection in a subject by administering prodrugs of compounds of the formula I.
  • Compounds of formula I having free amino, amido, hydroxy or carboxylic groups can be converted into prodrugs.
  • Prodrugs include compounds wherein an amino acid residue, or a polypeptide chain of two or more (eg, two, three or four) amino acid residues which are covalently joined to free amino, hydroxy and carboxylic acid groups of compounds of formula I.
  • the amino acid residues include the 20 naturally occurring amino acids commonly designated by three letter symbols and also include, 4-hydroxyproline, hydroxylysine, demosine, isodemosine, 3-methylhistidine, norvlin, beta-alanine, gamma-aminobutyric acid, citrulline, homocysteine, homoserine, ornithine and methionine sulfone.
  • Prodrugs also include compounds wherein carbonates, carbamates, amides and alkyl esters which are covalently bonded to the above substituents of formula I through the carbonyl carbon prodrug sidechain.
  • Prodrugs also include phosphate derivatives of compounds of formula I (such as acids, salts of acids, or esters) joined through a phosphorus- oxygen bond to a free hydroxyl of compounds of formula I.
  • the compounds of formula I may possess asymmetric centres and are therefore capable of existing in more than one stereoisomer ⁇ form.
  • the invention thus also relates to compounds in substantially pure isomeric form at one or more asymmetric centres eg., greater than about 90% ee, such as about 95% or 97% ee or greater than 99% ee, as well as mixtures, including racemic mixtures, thereof.
  • Such isomers may be prepared by asymmetric synthesis, for example using chiral intermediates, or by chiral resolution.
  • the present invention provides a method of treatment or prophylaxis of a viral infection in a subject comprising administering to said subject an effective amount of a compound of formula (I) or a pharmaceutically acceptable derivative, salt or prodrug thereof.
  • a compound of Formula I or a pharmaceutically acceptable derivative, salt or prodrug thereof in the preparation of a medicament for the treatment or prophylaxis of a viral infection in a subject.
  • the viral infection of the second and third aspects is a HIV or SIV infection.
  • the HIV or SIV infection comprises a viral strain resistant to other integrase inhibitors such as Isentrass (raltregavir, MK-0158) or elvitegravir.
  • the viral strain comprises HIV integrase enzyme containing the
  • the compound of formula (I) is co-administered with Raltegravir.
  • the compound of formula (I) can be administered simultaneously with Raltegravir, or the compound of formula (I) can be dminsistered before or after the administration of Raltegravir provided they are in the same course of treatment as would be understood by the person skilled in the art.
  • the present invention provides pharmaceutical composition
  • a pharmaceutically acceptable carrier, diluent or excipient comprising a compound according to the first aspect and a pharmaceutically acceptable carrier, diluent or excipient.
  • compositions of the present invention may contain other therapeutic agents as described below, and may be formulated, for example, by employing conventional solid or liquid vehicles or diluents, as well as pharmaceutical additives of a type appropriate to the mode of desired administration (for example, excipients, binders, preservatives, stabilizers, flavors, etc.) according to techniques such as those well known in the art of pharmaceutical formulation.
  • the compounds of the present invention may be administered by any suitable means, for example, parenterally, such as by subcutaneous, intravenous, intramuscular, or intracisternal injection or infusion techniques (e.g., as sterile injectable aqueous or non-aqueous solutions or suspensions).
  • parenterally such as by subcutaneous, intravenous, intramuscular, or intracisternal injection or infusion techniques (e.g., as sterile injectable aqueous or non-aqueous solutions or suspensions).
  • compositions include those for oral, rectal, nasal, topical (including buccal and sub-lingual), vaginal or parenteral (including intramuscular, sub-cutaneous and intravenous) administration or in a form suitable for administration by inhalation or insufflation.
  • the compounds of the invention may thus be placed into the form of pharmaceutical compositions and unit dosages thereof, and in such form may be employed as solids, such as tablets or filled capsules, or liquids as solutions, suspensions, emulsions, elixirs or capsules filled with the same, all for oral use, in the form of suppositories for rectal administration; or in the form of sterile injectable solutions for parenteral (including subcutaneous) use.
  • mammals including, but not limited to, cows, sheep, goats, horses, dogs, cats, guinea pigs, rats or other bovine, ovine, equine, canine, feline, rodent or murine species can be treated.
  • the method can also be practiced in other species, such as avian species (e.g., chickens).
  • the term "effective amount” means the amount of the subject composition that will elicit the biological or medical response of a tissue, system, animal or human that is being sought by the researcher, veterinarian, medical doctor or other clinician.
  • treatment does not necessarily mean that the viral infection is completely cured.
  • treatment encompasses any reduction in the viral load and/or inhibition of replication in the subject being treated.
  • composition as used herein is intended to encompass a product comprising the specified ingredients in the specified amounts, as well as any product which results, directly or indirectly, from combination of the specified ingredients in the specified amounts.
  • pharmaceutically acceptable it is meant the carrier, diluent or excipient must be compatible with the other ingredients of the formulation and not deleterious to the recipient thereof.
  • administering a should be understood to mean providing a compound of the invention to the individual in need of treatment.
  • compositions for the administration of the compounds of this invention may conveniently be presented in dosage unit form and may be prepared by any of the methods well known in the art of pharmacy. All methods include the step of bringing the active ingredient into association with the carrier which constitutes one or more accessory ingredients.
  • the pharmaceutical compositions are prepared by uniformly and intimately bringing the active ingredient into association with a liquid carrier or a finely divided solid carrier or both, and then, if necessary, shaping the product into the desired formulation.
  • the active object compound is included in an amount sufficient to produce the desired effect upon the process or condition of diseases.
  • composition is intended to encompass a product comprising the specified ingredients in the specified amounts, as well as any product which results, directly or indirectly, from combination of the specified ingredients in the specified amounts.
  • the pharmaceutical compositions may be in the form of a sterile injectable aqueous or oleagenous suspension. This suspension may be formulated according to the known art using those suitable dispersing or wetting agents and suspending agents which have been mentioned above.
  • the sterile injectable preparation may also be a sterile injectable solution or suspension in a non-toxic parenterally-acceptable diluent or solvent, for example as a solution in 1,3 -butane diol.
  • Suitable vehicles and solvents that may be employed are water, Ringer's solution and isotonic sodium chloride solution.
  • sterile, fixed oils are conventionally employed as a solvent or suspending medium.
  • any bland fixed oil may be employed including synthetic mono- or diglycerides.
  • fatty acids such as oleic acid find use in the preparation of injectables.
  • the pharmaceutical composition and method of the present invention may further comprise other therapeutically active compounds which are usually applied in the treatment of the above mentioned pathological conditions. Selection of the appropriate agents for use in combination therapy may be made by one of ordinary skill in the art, according to conventional pharmaceutical principles.
  • the combination of therapeutic agents may act synergistically to effect the treatment or prevention of the various disorders described above. Using this approach, one may be able to achieve therapeutic efficacy with lower dosages of each agent, thus reducing the potential for adverse side effects.
  • an appropriate dosage level will generally be about 0.01 to 500 mg per kg patient body weight per day which can be administered in single or multiple doses.
  • the dosage level will be about 0.1 to about 250 mg/kg per day; more preferably about 0.5 to about 100 mg/kg per day.
  • a suitable dosage level may be about 0.01 to 250 mg/kg per day, about 0.05 to 100 mg/kg per day, or about 0.1 to 50 mg/kg per day. Within this range the dosage may be 0.05 to 0.5, 0..5 to 5 or 5 to 50 mg/kg per day.
  • compositions are preferably provided in the form of tablets containing 1.0 to 1000 milligrams of the active ingredient, particularly 1.0, 5.0, 10.0, 15.0, 20.0, 25.0, 50.0, 75.0, 100.0, 150.0, 200.0, 250.0, 300.0, 400.0, 500.0, 600.0, 750.0, 800.0, 900.0, and 1000.0 milligrams of the active ingredient for the symptomatic adjustment of the dosage to the patient to be treated.
  • the compounds may be administered on a regimen of 1 to 4 times per day, preferably once or twice per day.
  • the amino compound can be reacted as in scheme 1 with the fumarate derivative or suitable analogues of fumarate where for example the acetyl groups can be replaced by other suitable leaving groups such as tosyl or mesyl.
  • the reaction can be carried out in a suitable solvent such as methanol, DME, DMA, DMSO, chloroform, THF or dioxane.
  • the reaction can be heated or subject to microwave irradiation (see for example B. R. Roberts & C. R. Strauss, Ace. Chem. Res. 2005, 38, 653-661, "Toward Rapid, 'Green' Predictable Microwave-assisted Synthesis").
  • the reaction can be performed in the absence or presence of catalytic amounts of acid or base.
  • R 3-F.4-C1; 3 C1,4-F
  • Buffer A 100% acetonitrile
  • Buffer B 0.1% aqueous TFA
  • Example 39 Preparation of 6-Benzyloxy-l-[2-(2,6-dimethyl-morpholin-4 -yl)-2- oxo-ethyI]-5-oxo-l,5-dihydro-imidazo[l,2-a]pyrimidine-7-carbothioic acid S-[2- (3,4-dichloro-phenyl)-l-formyI-ethyl] ester
  • Example 36 Adapted from the procedure used to prepare Example 36.
  • Example 50 preparation of 2- ⁇ 2-[6-Benzyloxy-5-oxo-l-(2-oxo-2-piperidin -1-yl- ethyl)-l,5-dihydro-imidazo[l,2-a]pyrimidin-7-yl]-thiazoI-5-ylmethyl ⁇ -benzoic acid methyl ester
  • Example 51 preparation of 2- ⁇ 2-[6-Hydroxy-5-oxo-l-(2-oxo-2-piperidin-l -yl- ethyl)-l,5- dihydro-imidazo[l,2-a]pyrimidin-7-yl]-thiazol-5-ylmethyl ⁇ -benzoic acid methyl ester
  • Example 57 Preparation of 2-(2- ⁇ 6-Benzyloxy-l-[2-(2,6-dimethyl-morpholin -4- yl)-2-oxo-ethyl]-5-oxo-l,5-dihydro-imidazo[l,2-a]pyrimidin-7-yl ⁇ -thiazol-5- ylmethyl)-5-fluoro-benzoic acid methyl ester
  • Example 61 Preparation of 6-Benzyloxy-l-[2-(2,6-dimethyl-morphoIin -4-yl)-2- OXO- ethyl]-5-oxo-l,5-dihydro-imidazo[l,2-a]pyrimidine-7-carbothioic acid S-[2-(3- chloro-4-fluoro-phenyI)-l-formyl-ethyl] ester
  • the titled compound was used directly in the next step.
  • Example 68 Preparation of 6-Benzyloxy-l-[2-(2,6-dimethyl-morphoIin-4-yl)-2 - oxo-ethy I] -3-(l , 1 -dioxo- 116-isothiazolidin-2-yl)-5-oxo- 1 ,5-dihy dro-imidazo [ 1 ,2- a]pyrimidine-7-carboxylic acid methyl ester
  • Example 70 Preparation of 6-Benzyloxy-l-[2-(2, 6-dimettayl-morpholin-4-yl) -2- oxo-ethyl]-3-(l,l-dioxo-116-isothiazolidin-2-yl)-5-oxo-l,5-dihydro-imidazo[l,2- a]pyrimidine-7-carbothioic acid
  • Example 73 Preparation of 6-Benzyloxy-l-[2-(2,6-dimethyl-morpholin-4-yl)-2- oxo-ethyl] -3-(l ,1-dioxo- 116-isothiazolidin-2-yl)-5-oxo-l ,5-dihydro-imidazo [ 1 ,2- a]pyrimidine-7-carbothioic acid S-[l-(4-fluoro-benzyl)-2-oxo-ethyl] ester
  • Example 76 Preparation of 2-(2- ⁇ 5-Benzyloxy-l-[2-(2,6-dimethyl-morpholin- 4- yl)-2-oxo-ethyI]-4-oxo-3a,4-dihydro-lH-indol-6-yl ⁇ -thiazol-5-yImethyl)-5-fluoro- benzoic acid
  • Example 78 preparation of 2-(2- ⁇ l-[2-(2,6-Dimethyl-morphoIin-4-yl) -2-oxo- ethyl]-6-hydroxy-5-oxo-l,5-dihydro-imidazo[l,2-a]pyrimidin-7-yl ⁇ -thiazol-5- ylmethyl)-5-fluoro-N,N-dimethyl-benzamide
  • Example 79 Preparation of 6-Benzyloxy-l-[2-(2,6-dimethyl-morpholin-4-yl) -2- oxo-ethyl]-3-(l,l-dioxo-116-isothiazolidin-2-yl)-5-oxo-l,5-dihydro-imidazo[l,2- a]pyrimidine-7-carbothioic acid S-[l-(3,4-dichloro-benzyl)-2-oxo-ethyl] ester
  • Example 80 Preparation of 6-Benzyloxy-7-[5-(3,4-dichloro-benzyl)-thiazoI- 2-yl]- l-P-Cl ⁇ -dimethyl-morpholin ⁇ -y ⁇ -oxo-ethylJ-S-Cljl-dioxo-ll ⁇ -isothiazolidin-l- y I)- 1 H-imidazo [ 1,2-a] py rimidin-5-one
  • Example 81 Preparation of 7-[5-(3,4-Dichloro-benzyl)-thiazoI-2-yl]-l- [2-(2,6- dimethyl-morpholin-4-yl)-2-oxo-ethyl]-3-(l,l-dioxo-116-isothiazolidin-2-yl)-6- hydroxy-lH-iniidazo[l,2-a]pyrimidin-5-one
  • Example 90 Preparation of 6-Benzyloxy-l-[2-(2,6-dimethyl-morpholin-4-yl) -2- oxo-ethyl]-5-oxo-l,5-dihydro-imidazo[l,2-a]pyrimidine-7-carbothioic acid S- ⁇ 1- [4-fluoro-2-(morpholine-4-sulfonyl)-benzyl] -2-oxo-ethyl ⁇ ester
  • Example 92 Preparation of l-[2-(2,6-Dimethyl-morpholin-4-yI)-2-oxo- ethyl]-7- ⁇ 5- [4-fluoro-2-(morpholine-4-sulfonyI)-benzyl]-thiazol-2-yl ⁇ -6-hydroxy-lH- imidazo [1 ,2-a] py rimidin-5-one
  • Example 102 Preparation of 6-Benzyloxy-l-[2-(2,6-dimethyl-morphoIin-4-yI)- 2- oxo-ethyl]-5-oxo-l,5-dihydro-imidazo[l,2-a]pyrimidine-7-carbothioic acid S-[2- (2- dimethylsulfamoyl-4-fluoro-phenyl)-l-formyl-ethyI] ester
  • Example 104 Preparation of 2-(2- ⁇ l-[2-(2,6-Dimethyl-morpholin-4-yl)-2 -oxo- ethyl]-6-hydroxy-5-oxo-l,5-dihydro-imidazo[l,2-a]pyrimidin-7-yl ⁇ -thiazol-5- ylmethyl)-5-fluoro-N,N-dimethyl-benzenesulfonamide
  • Example 106 Methyl 6-acetoxy-l-(2-(4-(tert-butoxycarbonyl)piperazin-l-yl) -2- oxoethyl)-5-oxo-l ,5-dihy droimidazo [1 ,2-a] pyrimidine-7-carboxylate
  • Example 107 Methyl 6-(benzyloxy)-l-(2-(4-(tert-butoxycarbonyI)piperazin-l-yl) 2-oxoethyl)-5-oxo-l ,5-dihy droimidazo [ 1 ,2-a] pyrimidine-7-carboxylate
  • Example 109 6-(Benzyloxy)-l-(2-(4-(tert-butoxycarbonyl)piperazin-l-yl) -2- oxoethy l)-5-oxo- 1 ,5-dihy droimidazo [ 1 ,2-a] py rimidine-7-carbothioic S-acid
  • Example 111 tert-Butyl 4-(2-(6-(benzyloxy)-7-(5-(4-fluorobenzyl)thiazol-2- yl)-5- oxoimidazo [l,2-a]pyrimidin-l(5H)-yI)acetyl)piperazine-l-carboxylate
  • Example 114 Preparation of l- ⁇ 2-[4-(2,2-Dimethyl-propionyI)-piperazin-l-yl] -2- oxo-ethyl ⁇ -7-[5-(4-fluoro-benzyl)-thiazol-2-yl]-64iydroxy-lH-imidazo[l,2- a] py rimidin-5-one
  • Example 115 Preparation of 2-(2- ⁇ 6-Benzyloxy-l-[2-(2,6-dimethyl-morpholin -4- yl)-2-oxo-ethyl]-5-oxo-l,5-dihydro-imidazo[l,2-a]pyrimidin-7-yl ⁇ -thiazol-5- ylmethyl)-5-fluoro-N-isopropyl-benzamide
  • Example 116 Preparation of 2-(2- ⁇ l-[2-(2,6-Dimethyl-morpholin-4-yl)-2-oxo- ethyl]-6-hydroxy-5-oxo-l,5-dihydro-imidazo[l,2-a]pyrimidin-7-yl ⁇ -thiazol-5- ylmethyl)-5-fluoro-N-isopropyl-benzamide
  • Example 118 2-((2-(l-(2-((2S,6R)-2,6-dimethylmorpholino)-2-oxoethyl) -6- hydroxy-5-oxo-l,5-dihydroimidazo[l,2-a]pyrimidin-7-yl)thiazol-5-yl)methyI)-5- fluorobenzamide
  • the titled product was used directly in next step.
  • Example 136 Preparation of 6-Benzyloxy-l-[2-(2,6-dimethyl-morpholin-4-yl)-2- oxo-ethyll-S-oxo-l-S-dihydro-imidazofl ⁇ -aJpyrimidine-T-carbothioic acid S-[l-(4- fluoro-2- methanesulfonyl-benzyl)-2-oxo-ethyl] ester
  • Example 138 Preparation of l-[2-(2,6-Dimethyl-morpholin-4-yl)-2-oxo-ethyl] -7- [5-(4-fluoro-2-methanesulfonyI-benzyl)-thiazoI-2-yl]-6-hydroxy-lH-imidazo[l,2- a] pyrimidin-5-one
  • Example 139 Preparation of 2-(2- ⁇ 6-Benzyloxy-l-[2-(2, 6-dimethyl-morpholin-4- yl)-2-oxo-ethyl] -5-oxo-l ,5-dihydro-imidazo [1 ,2-a] pyrimidin-7-yl ⁇ -thiazol-5- ylmethyl)-N-cyclopropyl-5-fIuoro-benzamide
  • Example 140 Preparation of N-Cyclopropyl-2-(2- ⁇ l-[2-(2,6-dimethyl-morpholin- 4-yl)-2-oxo-ethyI]-6-hydroxy-5-oxo-l,5-dihydro-imidazo[l,2-a]pyrimidin-7-yl ⁇ - thiazol-5-ylmethyl)-5-fluoro-benzamide
  • Example 142 7-(5-(4-fluorobenzyl)thiazol-2-yl)-6-hydroxy-l-(2-(4-methyl piperazin-l-yl)-2-oxoethyl)imidazo[l,2-a]pyrimidin-5(lH)-one
  • Example 143 7-(5-(4-fluorobenzyl)thiazoI-2-yl)-6-hydroxy-l-(2-oxo-2-(piperazin - l-yl)ethyl)imidazo[l,2-a]pyrimidin-5(lH)-one
  • the titled compound was made by bromination of 2-methylthiazole in CCl 4 with NBS/AIBN in 35 % yield.
  • Example 151 Preparation of 6-Acetoxy-l-[2-(4-methyl-piperidin -l-yl)-2-oxo- ethyl]-5-oxo- l,5-dihydro-imidazo[l,2-a]pyrimidine-7-carboxyIic acid methyl ester
  • Example 154 Preparation of 6-Benzyloxy-l-[2-(4-methyl-piperidin-l-yl) -2-oxo- ethy 1] -5-oxo- 1 ,5-dihy d ro-im idazo [ 1 ,2-a] py rimidine-7-carbothioic acid
  • Example 155 Preparation of 6-Benzyloxy-l-[2-(4-methyl-piperidin-l-yl)-2-oxo- ethyl]-5-oxo- l,5-dihydro-imidazo[l,2-a]pyrimidine-7-carbothioic acid S-[2-(4- fluoro-phenyl)-l-formyl- ethyl] ester
  • Example 160 Preparation of S-3-(4-fluorophenyl)-l-oxobutan-2-yl-6-(benzyIoxy) l-(2-((2S, 6R)-2, 6- dimethylmorpholino)-2-oxoethyl)-5-oxo-l,5-dihydroimidazo [l,2-a]pyrimidine-7-carbothioate
  • Example 161 Preparation of 6-(benzyloxy)-l-(2-((2S,6R)-2,6-dimethyl morpholino)-2-oxoethyl)-7-(5-(l-(4-fluorophenyl)ethyl)thiazol-2-yl)imidazo[l,2- a]pyrimidin-5(lH)-one
  • Example 162 Preparation of l-(2-((2S,6R)-2,6-dimethylmorpholino)-2- oxoethyl)- 7-(5-(l-(4-fluorophenyl)ethyl)thiazol-2-yl)-6-nydroxyimidazo[l,2-a]pyrimidin- 5(lH)-one
  • Example 163 Preparation of 2-((2-(6-(benzyloxy)-l-(2-((2S,6R)-2,6-dimethyI morpholino)-2-oxoethyl)-5-oxo-l,5-dihydroimidazo[l,2-a]pyrimidin-7-yl)thiazol-5- yl)methyl)-5-fluorobenzonitrile
  • Example 167 Preparation of 6-Benzyloxy-l-[2-(2,6-dimethyl-morpholin-4 -yl)-2- oxo-ethyl]-5- oxo-l,5-dihydro-imidazo[l,2-a]pyrimidine-7-carbothioic acid S-[l-(4- fluoro-2- methyIsulfanyl-benzyl)-2-oxo-ethyl] ester
  • Example 170 Preparation of l-[2-(2,6-Dimethyl-morpholin-4 -yl)-2-oxo-ethyl]-7- [5- 4-fluoro- 2-methanesulfinyl-benzyl)-thiazol-2-yl]-6- hydroxy-lH-imidazo[l,2- a]pyrimidin-5-one
  • Example 171 Preparation of Acetic acid l-[2-(2,6-dimethyl-morpholin-4-yl) -2- oxo-ethyI]-7-[5-(4-fluoro-2-methanesulfinyI-benzyl)-thiazol-2-yl]-5-oxo-l,5- dihydro-imidazo[l,2-a]pyrimidin-6-yl ester
  • Example 172 preparation of l-[2-(2,6-Dimethyl-morpholin-4- yl)-2-oxo-ethyl]-7- [5-(4-fluoro-2-methylsulfanyl-benzyl)-thiazol-2-yl]-6-hydroxy-lH-imidazo[l,2- a] pyrimidin-5-one
  • Example 173 preparation of 6-Acetoxy-l-[2-(3,5-dimethyl-piperidin- l-yl)-2-oxo- ethyl]-5- oxo-l,5-dihydro-imidazo[l,2-a]pyrimidine-7-carboxyIic acid methyl ester
  • Example 174 preparation of l-[2-(3,5-Dimethyl-piperidin-l-yl)-2-oxo- ethyl]-6- hydroxy-5- oxo-l,5-dihydro-imidazo[l,2-a]pyrimidine-7-carboxylic acid methyl ester
  • the titled product was used directly in next step.
  • Example 175 preparation of 6-Benzyloxy-l-[2-(3,5-dimethyl-piperidin-l-yl) -2- oxo-ethyl]-5- oxo-l,5-dihydro-imidazo[l,2-a]pyrimidine-7-carboxylic acid methyl ester
  • the titled product was used directly in next step.
  • Example 176 preparation of 6-Benzyloxy-l-[2-(2,6-dimethyl-morpholin-4- yl)-2- OXO- ethyl]-5-oxo-l,5-dihydro-imidazo[l,2-a]pyrimidine-7-carboxy lie acid
  • Example 177 preparation of 6-Benzyloxy-l-[2-(2,6-dimethyl-morpholin -4-yl)-2- oxo-ethyl] - 5-oxo-l ,5-dihy dro-imidazo [1 ,2-a] pyrimidine-7-carbothioic acid
  • Example 178 preparation of 6-BenzyIoxy-l-[2-(3,5-dimethyl-piperidin-l-yl)-2 - oxo-ethyl]-5- oxo-l,5-dihydro-imidazo[l,2-a]pyrimidine-7-carbothioic acid S-[2-(4- fluoro-pheny I)-I- formyl-ethyl] ester
  • the titled product was used directly in next step.
  • Example 179 preparation of 6-BenzyIoxy-l-[2-(3,5-dimethyl-piperidin-l- yl)-2- oxo-ethyl] -7- [5-(4-fluoro-benzy.)-thiazol-2-y I] -lH-imidazo [1 ,2-a] py rimidin-5-one
  • Example 181 6-Hydroxy-3-morpholin-4-ylmethyl-5-oxo-l-(2-oxo-2-piperidin-l- yl-ethyI)-l,5-dihydro-imidazo[l,2-a]pyrimidine-7-carboxylic acid 3,4-dichloro- benzylamide
  • Example 182 l-[2-((2S,6S)-2,6-Dimethyl-morpholin-4-yl)-2-oxo-ethyl]-7-[5-(4- fluoro-benzyl)-thiazol-2-yl]-6-hydroxy-lH-imidazo[l,2-a]pyrimidin-5-one
  • Example 183 7- [5-(4-Fluoro-benzyI)-thiazol-2-yl] -6-hy droxy-l-(l -methyI-2-oxo- py rrolidin-3-yl)-l H-imidazo [1 ,2-a] pyrimidin-5-one
  • Example 184 l-[2-(2,6-Dimethyl-morphoIin-4-yl)-l-methyl-2-oxo-ethyl]-7-[5-(4- fluoro-benzyI)-thiazol-2-yl]-6-hydroxy-lH-imidazo[l,2-a]pyrimidin-5-one
  • Example 185 l-[2-(2-Aza-bicyclo[2.2.1]hept-2-yl)-2-oxo-ethyl]-7-[5-(4-fluoro- benzyl)-thiazol-2-yl]-6-hydroxy-lH-imidazo[l,2-a]pyrimidin-5-one

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Abstract

The present invention provides a compound of formula (I) or a pharmaceutically acceptable derivative, salt or prodrug thereof. The present invention further provides a method of treatment or prophylaxis of a viral infection in a subject comprising administering to said subject an effective amount of a compound of formula (I) or a pharmaceutically acceptable derivative, salt or prodrug thereof. Pharmaceutical compositions comprising a compound of formula (I) are also provided.

Description

IMIDAZOPYRIMIDINONES AND USES THEREOF
FIELD OF THE INVENTION
The present invention relates to a class of compounds useful in the treatment of viral infections, particularly HIV infections which show resistance to known HIV inhibitors.
BACKGROUND OF THE INVENTION
The retrovirus designated "human immunodeficiency virus" or "HIV" is the etiological agent of a complex disease that progressively destroys the immune system. This disease is known as acquired immune deficiency syndrome or AIDS. As at December 2005 an estimated 40 million people are living with HIV world wide and over 3 million deaths are occurring annually.
A feature of retrovirus replication includes the reverse transcription of the viral genome into proviral DNA and its integration into the host cell genome. These steps are required for HIV replication and are mediated by the virus encoded enzymes, reverse transcriptase and integrase respectively.
HIV infection follows a path of the virus particle binding to cell surface receptors and co-receptors resulting in fusion of the virus particle with the cell. The contents of the virus are released into the cytoplasm where reverse transcription of the HIV genome occurs. Through a series of steps a double stranded proviral DNA copy is produced. The proviral DNA is transported to the nucleus in a complex known as the pre integration complex (PIC) which contains integrase and other viral and possibly cellular proteins. Once inside the nucleus the proviral DNA is integrated into the host cell genome via the action of integrase. Once integrated, transcription and translation of the viral genome can occur resulting in the production of viral proteins and a new viral RNA genome. These proteins and genome assemble at the cell surface and, depending on cell type, possibly other intracellular membranous compartments.
Assembled particles then bud out from the cell and during, or soon after, this process mature into infectious HIV particles through the action of the viral protease.
The integration of the proviral genome into the host cell genome requires the action of an integrase which carries out this process in at least three steps, possibly four. The first step involves the assembly of the viral genome into a stable nucleoprotein complex, secondly, processing of two nucleotides from the 3' termini of the genome to give staggered ends with free 3' OH residues and thirdly the transfer of these ends into the host cell genome. The final step involves the gap filling and repair of the insertion site in the host genome. There is still some conjecture over whether the integrase performs this final step or whether it is carried out by cellular repair enzymes.
Currently HIV infection can be treated with a number of inhibitors on the market which target reverse transcriptase, protease or entry into the cell. Treatment of HIV infection with these, or a combination of these, drugs is known to be an effective treatment for AIDS and similar diseases. Shortcomings with the current inhibitors include the rapid emergence and increase incidence of resistance and numerous side effects.
Certain mutations within the wild-type viral integrase enzyme are known to confer resistance to a number of known integration inhibitors published in the literature. In particular, the viral variants containing Q148H/G140S double mutation in integrase and the N155H/E92Q double mutation in integrase represent the two of the more common viruses identified that are failing treatment with Isentress (Raltegravir, MK-0518). The triple mutant Q 148K/G 140 A/E 138 A is also resistant to Raltegravir. See: Kobayashi et al, Antiviral Research, received 17 April 2008, accepted 17 June 2008; and Vacca et al; Discovery of MK-2048 - subtle changes confer unique resistance properties to a series of tricyclic hydroxypyrrole integrase strand transfer inhibitors; Abstract from the 4th IAS Conference on HIV Pathogenesis Treatment and Prevention; 22-25 July 2007, Sydney, Australia.
The specifications of Australian Provisional Patent Application Nos. 2006907283, 2007902479, 2007903401 and 2007904114 and International Patent Application No PCT/AU2007/001980 which derives priority from these applications describe a broad class of compounds that inhibit HIV integrase activity. The present inventors have now determined that a sub-class of these compounds are surprisingly effective (when compared to other members of the class) against viral variants containing the Q148H/G140S double mutation in integrase and the N155H/E92Q double mutation in integrase. SUMMARY OF THE INVENTION
In a first aspect, the present invention provides a compound of Formula I or a pharmaceutically acceptable derivative, salt or prodrug thereof wherein:
Figure imgf000004_0001
Li-Ri is hydrogen or is a substituent wherein
Li is selected from the group consisting of Z, Ci-3alkylene, >C=Z, -CZ2-, -C(=Z)Ci-3alkylene, -CZ2-C1-3alkylene, -Ci-3alkylene-C(=Z)-, -C].3alkylene-CZ2- wherein each Z is independently selected from O, S, and NH;
each Ri is independently selected from the group consisting of hydrogen, Ci.ioalkyl wherein one or more of the carbon atoms of the alkyl chain may optionally be replaced with oxygen atoms, C1-10alkylNR3R4, halo, NR3R4, alkylaryl, alkylheteroaryl, a 4-7 membered lactam, S(O)NR3R4, SO2NR3R4, S02Ci.ioalkyl, C5-i0cycloalkyl wherein one or more of the carbon atoms of the cycloalkyl ring are replaced with one or more oxygen atoms;
R3 and R4 are each independently selected from the group consisting of hydrogen, CMOalkyl, C3-6cycloalkyl, Ci-I0NR5R6, -(CO)(CO)NR5R6; or R3 and R4 taken together with the attached nitrogen form a 5-7 membered heterocyclic ring which contains zero to two additional heteroatoms selected from N, O or S where S can be at the S, S(O) or S(O)2 oxidation state and wherein said heterocyclic ring is optionally substituted at the carbon or nitrogen atoms with one or more substituents selected from halo, C1-4alkyl, CO2C1-4alkyl, NR5R6; CMaIlCyINR5R6 and further wherein two carbons of said 5-7 membered heterocyclic ring may optionally be bridged by a C1-3 alkylene bridging group;
R5 and R6 are each independently selected from the group consisting of H and
Figure imgf000005_0001
or R5 and R6 together with the attached nitrogen form a
5-7 membered heterocyclic ring which contains zero to two additional heteroatoms selected from N, O or S where S can be at the S, S(O) or S(O)2 oxidation state and wherein said heterocyclic ring is optionally substituted at the carbon or nitrogen atoms with one or more substituents selected from halo and C1-4alkyl and further wherein two carbons of said
5-7 membered heterocyclic ring may optionally be bridged by a C1-3 alkylene bridging group;
L4-R11 is 0-2 substituents wherein:
each L4 is independently absent or is selected from the group consisting of Z, Ci-3alkylene, >C=Z, -CZ2-, -C(=Z)C1-3alkylene, -CZ2-C 1-3alkylene,
-Ci-3alkylene-C(=Z)-, -C1-3alkylene-CZ2- wherein each Z is independently selected from O, S, and NH;
each R11 is independently selected from the group consisting of hydrogen, C1-10alkyl wherein one or more of the carbon atoms of the alkyl chain may optionally be replaced with oxygen atoms, Cj.ioalkyl where one of the carbon atoms is replaced by S in the S, S(O), or S(O)2 oxidation state, C1-10alkylNR3R4, halo, NR3R4, alkylaryl, S(O)NR3R4, SO2NR3R4, SO2CM0alkyl, and C5-10cycloalkyl wherein one or more of the carbon atoms of the cycloalkyl ring are replaced with one or more oxygen atoms;
when Rj 1 is alkylaryl, the aryl group of said alkylaryl substituent is optionally substituted with a substituent selected from C1-10alkyl, -O-Ci-ioalkyl, CMoalkylNR÷sR,, -O-Ci-10alkylNR3R4, halo, NR3R4, alkylaryl, -O-alkylaryl, SO2NR3R4
H1 is a selected from the group consisting of-C(=0)NH- and a 5- or 6-membered saturated, partially saturated or aromatic ring containing between 1 and 4 heteroatoms wherein each heteroatom is independently selected from the group consisting of N, O and S; L2-R7 is 0-2 substituents wherein:
each L2 is independently absent or is group consisting of Z, C1-3alkylene, >C=Z, -CZ2-, -C(=Z)Ci-3alkylene, -CZ2-C1-3alkylene, -C1-3alkylene-C(=Z)-, -Ci-3alkylene-CZ2- wherein each Z is independently selected from O, S, and NH;
each R7 is independently selected from the group consisting of hydrogen, Ci.10alkyl wherein one or more of the carbon atoms of the alkyl chain may optionally be replaced with oxygen atoms, C1-1OaIlCyINR3R4, halo, NR3R4, alkylaryl, S(O)NR3R4, SO2NR3R4, SO2C1-10alkyl, and C5-10cycloalkyl wherein one or more of the carbon atoms of the cycloalkyl ring are replaced with one or more oxygen atoms;
X is CR8Rg'
each ofR8 and R8- is independently selected from the group consisting of H and CH3, preferably H;
H2 is a 5- or 6-membered saturated, partially saturated or aromatic ring containing between 0 and 4 heteroatoms independently selected from the group consisting of N, O and S;
L3-R9 is 0-3 substituents wherein:
each L3 is independently absent or is selected from the group consisting of Z, Ci.3alkylene, >C=Z, -CZ2-, -C(=Z)Ci-3alkylene, -CZ2-C 1-3alkylene,
-Ci.3alkylene-C(=Z)-, -C1-3alkylene-CZ2- wherein each Z is independently selected from O, S, and NH;
each R9 is independently selected from the group consisting of hydrogen, Ci-10alkyl wherein one or more of the carbon atoms of the alkyl chain may optionally be replaced with oxygen atoms, C1-1OaIIiCyINR3R4, halo, NR3R4, heterocyclyl, heteroaryl, alkylaryl, S(O)NR3R4, SO2NR3R4, SO2Ci-i0alkyl, and C5-i0cycloalkyl wherein one or more of the carbon atoms of the cycloalkyl ring are replaced with one or more oxygen atoms.
In a second aspect, the present invention provides a method of treatment or prophylaxis of a viral infection in a subject comprising administering to said subject an effective amount of a compound of formula (I) or a pharmaceutically acceptable derivative, salt or prodrug thereof.
In a third aspect, there is provided the use of a compound of Formula I or a pharmaceutically acceptable derivative, salt or prodrug thereof in the preparation of a medicament for the treatment or prophylaxis of a viral infection in a subject.
In a fourth aspect, the present invention provides pharmaceutical composition comprising a compound according to the first aspect and a pharmaceutically acceptable carrier, diluent or excipient.
DETAILED DESCRIPTION OF THE INVENTION
In a first aspect, the present invention provides a compound of Formula I or a pharmaceutically acceptable derivative, salt or prodrug thereof wherein:
Figure imgf000007_0001
L]-R1 is hydrogen or is a substituent wherein
Li is selected from the group consisting of Z, C1-3alkylene, >C=Z, -CZ2-,
-C(=Z)Ci-3alkylene, -CZ2-C i-3alkylene, -Ci-3alkylene-C(=Z)-, -Ci-3alkylene-CZ2- wherein each Z is independently selected from O, S, and NH;
each R1 is independently selected from the group consisting of hydrogen, Ci-ioalkyl wherein one or more of the carbon atoms of the alkyl chain may optionally be replaced with oxygen atoms, C]-IOaIlCyINR3R4, halo, NR3R4, alkylaryl, alkylheteroaryl, a 4-7 membered lactam, S(O)NR3R4, SO2NR3R4, SO2Ci-10alkyl, C5-10cycloalkyl wherein one or more of the carbon atoms of the cycloalkyl ring are replaced with one or more oxygen atoms;
R3 and R4 are each independently selected from the group consisting of hydrogen, C1-10alkyl, C3-6cycloalkyl, C1-10NR5R6, -(CO)(CO)NR5R6; or R3 and R4 taken together with the attached nitrogen form a 5-7 membered heterocyclic ring which contains zero to two additional heteroatoms selected from N, O or S where S can be at the S, S(O) or S(O)2 oxidation state and wherein said heterocyclic ring is optionally substituted at the carbon or nitrogen atoms with one or more substituents selected from halo, C^alkyl, CO2C1-4alkyl, NR5R6; CMaUXyINR5R6 and further wherein two carbons of said 5-7 membered heterocyclic ring may optionally be bridged by a Cj-3 alkylene bridging group;
R5 and R6 are each independently selected from the group consisting of H and Ci^alkyl or R5 and R6 together with the attached nitrogen form a 5-7 membered heterocyclic ring which contains zero to two additional heteroatoms selected from N, O or S where S can be at the S, S(O) or
S(O)2 oxidation state and wherein said heterocyclic ring is optionally substituted at the carbon or nitrogen atoms with one or more substituents selected from halo and Ci^alkyl and further wherein two carbons of said 5-7 membered heterocyclic ring may optionally be bridged by a Ci-3 alkylene bridging group;
L4-R] i is 0-2 substituents wherein:
each L4 is independently absent or is selected from the group consisting of Z, Ci-3alkylene, >C=Z, -CZ2-, -C(=Z)C1-3alkylene, -CZ2-C ^alkylene, -C1-3alkylene-C(=Z)-, -Ci-3alkylene-CZ2- wherein each Z is independently selected from O, S, and NH;
each Rn is independently selected from the group consisting of hydrogen, Ci.ioalkyl wherein one or more of the carbon atoms of the alkyl chain may optionally be replaced with oxygen atoms, Cj.ioalkyl where one of the carbon atoms is replaced by S in the S, S(O), or S(O)2 oxidation state, Ci-]0alkylNR3R4, halo, NR3R4, alkylaryl, S(O)NR3R4, SO2NR3R4, S02C,.ioalkyl, and
C5-iocycloalkyl wherein one or more of the carbon atoms of the cycloalkyl ring are replaced with one or more oxygen atoms; when RH is alkylaryl, the aryl group of said alkylaryl substituent is optionally substituted with a substituent selected from Ci-10alkyl, -O-Ci-ioalkyl, C1-10alkylNR3R4, -O-Ci-i 0alkylNR3R4, halo, NR3R4, alkylaryl, -O-alkylaryl, SO2NR3R4
Hi is a selected from the group consisting of-C(=O)NH- and a 5- or 6-membered saturated, partially saturated or aromatic ring containing between 1 and 4 heteroatoms wherein each heteroatom is independently selected from the group consisting of N, O and S;
L2-R7 is 0-2 substituents wherein:
each L2 is independently absent or is group consisting of Z, Ci-3alkylene, >C=Z,
-CZ2-, -C(=Z)Ci-3alkylene, -CZ2-C i-3alkylene, -Ci-3alkylene-C(=Z)-, -C1-3alkylene-CZ2- wherein each Z is independently selected from O, S, and NH;
each R7 is independently selected from the group consisting of hydrogen, Ci-10alkyl wherein one or more of the carbon atoms of the alkyl chain may optionally be replaced with oxygen atoms, C1-1OaIlCyINR3R4, halo, NR3R4, alkylaryl, S(O)NR3R4, SO2NR3R4, S02CMoalkyl, and C5-i0cycloalkyl wherein one or more of the carbon atoms of the cycloalkyl ring are replaced with one or more oxygen atoms;
X is CR8R8-
each of Rg and Rg> is independently selected from the group consisting of H and CH3, preferably H;
H2 is a 5- or 6-membered saturated, partially saturated or aromatic ring containing between 0 and 4 heteroatoms independently selected from the group consisting of N, O and S;
L3-R9 is 0-3 substituents wherein:
each L3 is independently absent or is selected from the group consisting of Z, Ci.3alkylene, >C=Z, -CZ2-, -C(=Z)C1-3alkylene, -CZ2-C ]-3alkylene, -C1-3alkylene-C(=Z)-, -C1-3alkylene-CZ2- wherein each Z is independently selected from O, S, and NH; each R9 is independently selected from the group consisting of hydrogen, Ci-ioalkyl wherein one or more of the carbon atoms of the alkyl chain may optionally be replaced with oxygen atoms, C1-1OaIlCyINR3R4, halo, NR3R4, heterocyclyl, heteroaryl, alkylaryl, S(O)NR3R4, SO2NR3R4, SO2C1-10alkyl, and C5-1ocycloalkyl wherein one or more of the carbon atoms of the cycloalkyl ring are replaced with one or more oxygen atoms.
Preferably, Li is CH2(C=O)- and Rj is selected from the group consisting of N-piperidine, N-piperazine, N, N'-methyl-piperazine, and morpholino wherein each Ri is optionally substituted at the carbon or nitrogen atoms with one or two methyl groups.
In one embodiment, Hi is a five membered aromatic heterocycle selected from the group consisting of thiazole, oxazole, oxadiazole, thiadiazole, imidazole, triazole, and tetrazole.
More preferably, Hi is thiazole.
Preferably, H2 is phenyl.
In one form, L4-Ri 1 is one substituent wherein L4 is absent or is -CH2- and Ri 1 is NR3R4.
In one embodiment, L3-R9 is at least 2 substituents wherein the first L3-R9 is halo and in the second L3-R9> L3 is absent or is selected from >C=O and R9 is selected from the group consisting of halo, NR3R4 and SO2NR3R4.
In another embodiment, L3-R9 is one or two substituents wherein each L3-R9 is halo.
Preferably, at least one NR3R4 is independently selected from the group consiting of morpholino, a five-membered cyclic sulphonamide (such as isothiazolidine) and a six membered cyclic sulphonamide.
In a preferred form, the group "Ci.iOalkyl where one of the carbon atoms is replaced by S in the S, S(O), or S(O)2 oxidation state" is methylsulfanylmethyl or methylsulfonylmethyl.
In one embodiment, when Hi is -C(=0)NH-, LiRi is not hydrogen and L4-Rn is at least one substituent.
Preferably, when Hi is -C(=O)NH- then L4-R11 is a cyclic sulphonamide. Preferably, the compound is selected from the group consisting of:
Figure imgf000011_0001
Figure imgf000012_0001
7-{5-[2-(l,l-Dioxo-llambda*6*- isothiazolidin-2-yl)-4-fluoro- benzyl]-thiazol-2-yl}-6-hydroxy- 1 - (2-oxo-2-piperidin- 1 -yl-ethyl)- 1 H- imidazo[ 1 ,2-a]pyrimidin-5-one
N-(5-Fluoro-2-{2-[6-hydroxy-5- oxo- 1 -(2-oxo-2-piperidin- 1 -yl- ethyl)-! ,5-dihydro-imidazo[l ,2- a]pyrimidin-7-yl]-thiazol-5- ylmethyl} -phenyl)-N,N',N'- trimethyl-oxalamide
7-{5-[4-Fluoro-2-(4-methyl- piperazin- 1 -ylmethyl)-benzyl]- thiazol-2-yl} -6-hydroxy- 1 -(2 -oxo-2- piperidin- 1 -yl-ethyl)- 1 H- imidazo[ 1 ,2-a]pyrimidin-5-one
7-{5-[4-Fluoro-2-(5-methyl-l,l- dioxo- 1 lambda* 6 * - [ 1 ,2,5]thiadiazolidin-2-ylmethyl)- benzyl]-thiazol-2-yl } -6-hydroxy- 1 ■ (2-oxo-2-piperidin- 1 -yl-ethyl)- 1 H- imidazo[l ,2-a]pyrimidin-5-one
3-(l,l-Dioxo-llambda*6*- isothiazolidin-2-yl)-7- [5 -(4-fluoro- benzyl)-thiazol-2-yl]-6-hydroxy- 1 - methyl- 1 H-imidazo [1,2- a]pyrimidin-5-one
Figure imgf000013_0001
3-(l,l-Dioxo-llambda*6*- isothiazolidin-2-yl)-7-[5-(4-fluoro- benzyl)-thiazol-2-yl]-6-hydroxy- 1 - (2-oxo-2-piperidin- 1 -yl-ethyl)- 1 H- imidazo[l ,2-a]pyrimidin-5-one
7-[5-(4-Fluoro-benzyl)-thiazol-2- yl]-6-hydroxy-3 -(5 -methyl- 1 , 1 - dioxo- 1 lambda* 6 * - [ 1 ,2,5]thiadiazolidin-2-yl)- 1 -(2-oxo- 2-piperidin- 1 -yl-ethyl)- 1 H- imidazo[ 1 ,2-a]pyrimidin-5-one
N-[7-[5-(4-Fluoro-benzyl)-thiazol-2- yl]-6-hydroxy-5-oxo-l-(2-oxo-2- piperidin- 1 -yl-ethyl)- 1 ,5 -dihydro- imidazo[l ,2-a]pyrimidin-3-yl]- N,N',N'-trimethyl-oxalamide
7-[5-(4-Chloro-benzyl)-thiazol-2- yl] -6-hydroxy- 1 -[2-(4-methyl- piperazin- 1 -yl)-2-oxo-ethyl]- 1 H- imidazo[ 1 ,2-a]pyrimidin-5-one
Figure imgf000014_0001
Figure imgf000015_0001
Figure imgf000016_0001
Figure imgf000017_0001
-
Figure imgf000018_0001
N- { 7- [5 -(4-Fluoro-benzyl)-thiazol-
2-yl]-6-hydroxy- 1 -[2-(4-methyl- piperazin-l-yl)-2-oxo-ethyl]-5-oxo-
1 ,5-dihydro-imidazo[l ,2- a]pyrimidin-3-yl}-N,N',N'- trimethyl-oxalamide
Figure imgf000019_0001
Further preferred are compounds of Formula (I) as set out in the examples.
As used herein, the term "halo" or "halogen" refers to fluorine (fluoro), chlorine (chloro), bromine (bromo) or iodine (iodo).
As used herein, the terms "alkyl" and "alkylene" either used alone or in compound terms such as NH(alkyl) or N(alkyl)2, refer respectively to monovalent and divalent straight chain or branched hydrocarbon groups, having 1 to 3, 1 to 6, or 1 to 10 carbon atoms as appropriate. For example, suitable alkyl groups include, but are not limited to methyl, ethyl, propyl, isopropyl, n-butyl, sec-butyl, tert-butyl, pentyl, 2-methylbutyl, 3-methylbutyl, n-hexyl, 2-, 3- or 4-methylpentyl, 2-ethylbutyl, n-hexyl or 2-, 3-, 4- or 5-methylpentyl.
As used herein, the term "alkenyl" refers to a straight chain or branched hydrocarbon groups having one or more double bonds between carbon atoms. Suitable alkenyl groups include, but are not limited to, ethenyl, allyl, propenyl, iso-propenyl, butenyl, pentenyl and hexenyl.
The term "cycloalkyl" as used herein, refers to cyclic hydrocarbon groups. Suitable cycloalkyl groups include, but are not limited to cyclopropyl, cyclobutyl, cyclopentyl and cyclohexyl.
The term "aryl" as used herein, refers to a C6-C]0 aromatic hydrocarbon group, for example phenyl or naphthyl.
The term "alkylaryl" includes, for example, benzyl. The term "heterocycle" when used alone or in compound words includes monocyclic, polycyclic, fused or conjugated hydrocarbon residues, preferably C3-6, wherein one or more carbon atoms (and where appropriate, hydrogen atoms attached thereto) are replaced by a heteroatom so as to provide a non-aromatic residue. The bonds between atoms may be saturated or unsaturated. Suitable heteroatoms include, O, N and S. Where two or more carbon atoms are replaced, this may be by two or more of the same heteroatom or by different heteroatoms. Suitable examples of heterocyclic groups may include pyrrolidinyl, piperidyl, piperazinyl, morpholino, quinolinyl, isoquinolinyl, thiomorpholino, dioxanyl, 2,2'-dimethyl-[l,3]-dioxolanyl, tetrahydrofuranyl, tetrahydropyranyl, tetrahydropyrrolyl etc.
The term "heteroaryl" includes a 5- or 6-membered heteroaromatic ring containing one or more heteroatoms selected from O, N and S. Suitable examples of heteroaryl groups include furanyl, thiophenyl, tetrazolyl, 1,2,3-triazolyl, 1 ,2,4-triazolyl, imidazolyl, pyrazolyl, pyridinyl, pyrimidinyl, oxazolyl, oxadiazolyl, thioazolyl, thiodiazolyl etc. The heteroaromatic ring may be fused to a 5- or 6-membered aromatic or heteroaromatic ring to form a bicyclic aromatic ring system eg benzofuran.
Unless otherwise stated, each alkyl, alkylene, cycloalkyl, alkylaryl, aryl, heterocyclyl, or heteroaryl group may be optionally substituted with one or more of Ci-C3alkyl, C3- Qcycloalkyl, C6aryl, heterocyclyl, heteroaryl, CpCaalkylOH, alkylaryl, OH, OCi-C3alkyl, halo, CN, NO2, CO2H, CO2Ci.C3alkyl, CONH2, CONH(C, .C3alkyl), CON(Ci.C3alkyl)2, trifluoromethyl, NH2, NH(C1-C3alkyl) or N(C1-C3alkyl)2. For example, an optionally substituted aryl group may be 4-methylphenyl or 4-hydroxyphenyl group, and an optionally substituted alkyl group may be 2-hydroxyethyl, trifluoromethyl, or difluoromethyl. Each optional alkyl, cycloalkyl, alkylaryl, aryl, heterocyclyl, or heteroaryl substituent may also be optionally substituted.
Examples of optional substituents also include suitable nitrogen protecting groups (see "Protective Groups in Organic Synthesis" Theodora Greene and Peter Wuts, third edition, Wiley Interscience, 1999).
The salts of the compound of formula I are preferably pharmaceutically acceptable, but it will be appreciated that non-pharmaceutically acceptable salts also fall within the scope of the present invention, since these are useful as intermediates in the preparation of pharmaceutically acceptable salts. The term "pharmaceutically acceptable derivative" may include any pharmaceutically acceptable salt, hydrate or prodrug, or any other compound which upon administration to a subject, is capable of providing (directly or indirectly) a compound of formula I or an antibacterially active metabolite or residue thereof.
Suitable pharmaceutically acceptable salts include, but are not limited to, salts of pharmaceutically acceptable inorganic acids such as hydrochloric, sulphuric, phosphoric, nitric, carbonic, boric, sulfamic, and hydrobromic acids, or salts of pharmaceutically acceptable organic acids such as acetic, propionic, butyric, tartaric, maleic, hydroxymaleic, fumaric, malic, citric, lactic, mucic, gluconic, benzoic, succinic, oxalic, phenylacetic, methanesulphonic, toluenesulphonic, benzenesulphonic, salicylic, sulphanilic, aspartic, glutamic, edetic, stearic, palmitic, oleic, lauric, pantothenic, tannic, ascorbic and valeric acids.
Base salts include, but are not limited to, those formed with pharmaceutically acceptable cations, such as sodium, potassium, lithium, calcium, magnesium, zinc, ammonium, alkylammonium such as salts formed from triethylamine, alkoxyammonium such as those formed with ethanolamine and salts formed from ethylenediamine, choline or amino acids such as arginine, lysine or histidine. General information on types of pharmaceutically acceptable salts and their formation is known to those skilled in the art and is as described in general texts such as "Handbook of Pharmaceutical salts" P.H.Stahl, C.G.Wermuth, 1st edition, 2002, Wiley-VCH.
Basic nitrogen-containing groups may be quarternised with such agents as lower alkyl halide, such as methyl, ethyl, propyl, and butyl chlorides, bromides and iodides; dialkyl sulfates like dimethyl and diethyl sulfate; and others.
Hydroxyl groups may be esterified with groups including lower alkyl carboxylic acids, such as acetic acid and 2,2-dimethylpropionic acid, or sulfonated with groups including alkyl sulfonic acids, such as methyl sulfonic acid
This invention also encompasses pharmaceutical compositions containing prodrugs of compounds of formula I. This invention also encompasses methods of treating or preventing a viral infection in a subject by administering prodrugs of compounds of the formula I. Compounds of formula I having free amino, amido, hydroxy or carboxylic groups can be converted into prodrugs. Prodrugs include compounds wherein an amino acid residue, or a polypeptide chain of two or more (eg, two, three or four) amino acid residues which are covalently joined to free amino, hydroxy and carboxylic acid groups of compounds of formula I. The amino acid residues include the 20 naturally occurring amino acids commonly designated by three letter symbols and also include, 4-hydroxyproline, hydroxylysine, demosine, isodemosine, 3-methylhistidine, norvlin, beta-alanine, gamma-aminobutyric acid, citrulline, homocysteine, homoserine, ornithine and methionine sulfone. Prodrugs also include compounds wherein carbonates, carbamates, amides and alkyl esters which are covalently bonded to the above substituents of formula I through the carbonyl carbon prodrug sidechain. Prodrugs also include phosphate derivatives of compounds of formula I (such as acids, salts of acids, or esters) joined through a phosphorus- oxygen bond to a free hydroxyl of compounds of formula I.
It will also be recognised that the compounds of formula I may possess asymmetric centres and are therefore capable of existing in more than one stereoisomer^ form. The invention thus also relates to compounds in substantially pure isomeric form at one or more asymmetric centres eg., greater than about 90% ee, such as about 95% or 97% ee or greater than 99% ee, as well as mixtures, including racemic mixtures, thereof. Such isomers may be prepared by asymmetric synthesis, for example using chiral intermediates, or by chiral resolution.
In a second aspect, the present invention provides a method of treatment or prophylaxis of a viral infection in a subject comprising administering to said subject an effective amount of a compound of formula (I) or a pharmaceutically acceptable derivative, salt or prodrug thereof.
In a third aspect, there is provided the use of a compound of Formula I or a pharmaceutically acceptable derivative, salt or prodrug thereof in the preparation of a medicament for the treatment or prophylaxis of a viral infection in a subject.
Preferably, the viral infection of the second and third aspects is a HIV or SIV infection.
More preferably, the HIV or SIV infection comprises a viral strain resistant to other integrase inhibitors such as Isentrass (raltregavir, MK-0158) or elvitegravir. Even more preferably, the viral strain comprises HIV integrase enzyme containing the
Q148H/G140S double mutation, N155H/E92Q double mutation, the F121Y/T124K double mutation or the Q148K/G140A/E138A triple mutation. In a preferred form of the second and third aspects of the present invention, the compound of formula (I) is co-administered with Raltegravir. The compound of formula (I) can be administered simultaneously with Raltegravir, or the compound of formula (I) can be dminsistered before or after the administration of Raltegravir provided they are in the same course of treatment as would be understood by the person skilled in the art.
In a fourth aspect, the present invention provides pharmaceutical composition comprising a compound according to the first aspect and a pharmaceutically acceptable carrier, diluent or excipient.
The compositions of the present invention may contain other therapeutic agents as described below, and may be formulated, for example, by employing conventional solid or liquid vehicles or diluents, as well as pharmaceutical additives of a type appropriate to the mode of desired administration (for example, excipients, binders, preservatives, stabilizers, flavors, etc.) according to techniques such as those well known in the art of pharmaceutical formulation.
The compounds of the present invention may be administered by any suitable means, for example, parenterally, such as by subcutaneous, intravenous, intramuscular, or intracisternal injection or infusion techniques (e.g., as sterile injectable aqueous or non-aqueous solutions or suspensions).
Pharmaceutical formulations include those for oral, rectal, nasal, topical (including buccal and sub-lingual), vaginal or parenteral (including intramuscular, sub-cutaneous and intravenous) administration or in a form suitable for administration by inhalation or insufflation. The compounds of the invention, together with a conventional adjuvant, carrier or diluent, may thus be placed into the form of pharmaceutical compositions and unit dosages thereof, and in such form may be employed as solids, such as tablets or filled capsules, or liquids as solutions, suspensions, emulsions, elixirs or capsules filled with the same, all for oral use, in the form of suppositories for rectal administration; or in the form of sterile injectable solutions for parenteral (including subcutaneous) use.
In addition to primates, such as humans, a variety of other mammals can be treated according to the method of the present invention. For instance, mammals including, but not limited to, cows, sheep, goats, horses, dogs, cats, guinea pigs, rats or other bovine, ovine, equine, canine, feline, rodent or murine species can be treated. However, the method can also be practiced in other species, such as avian species (e.g., chickens).
The term "effective amount" means the amount of the subject composition that will elicit the biological or medical response of a tissue, system, animal or human that is being sought by the researcher, veterinarian, medical doctor or other clinician.
As would be understood by those skilled in the art of treating viral infections, and particularly HIV infections, the term "treatment" does not necessarily mean that the viral infection is completely cured. The term "treatment" encompasses any reduction in the viral load and/or inhibition of replication in the subject being treated.
The term "composition" as used herein is intended to encompass a product comprising the specified ingredients in the specified amounts, as well as any product which results, directly or indirectly, from combination of the specified ingredients in the specified amounts. By "pharmaceutically acceptable" it is meant the carrier, diluent or excipient must be compatible with the other ingredients of the formulation and not deleterious to the recipient thereof.
The terms "administration of and or "administering a" compound should be understood to mean providing a compound of the invention to the individual in need of treatment.
The pharmaceutical compositions for the administration of the compounds of this invention may conveniently be presented in dosage unit form and may be prepared by any of the methods well known in the art of pharmacy. All methods include the step of bringing the active ingredient into association with the carrier which constitutes one or more accessory ingredients. In general, the pharmaceutical compositions are prepared by uniformly and intimately bringing the active ingredient into association with a liquid carrier or a finely divided solid carrier or both, and then, if necessary, shaping the product into the desired formulation. In the pharmaceutical composition the active object compound is included in an amount sufficient to produce the desired effect upon the process or condition of diseases. As used herein, the term "composition" is intended to encompass a product comprising the specified ingredients in the specified amounts, as well as any product which results, directly or indirectly, from combination of the specified ingredients in the specified amounts. The pharmaceutical compositions may be in the form of a sterile injectable aqueous or oleagenous suspension. This suspension may be formulated according to the known art using those suitable dispersing or wetting agents and suspending agents which have been mentioned above. The sterile injectable preparation may also be a sterile injectable solution or suspension in a non-toxic parenterally-acceptable diluent or solvent, for example as a solution in 1,3 -butane diol. Among the acceptable vehicles and solvents that may be employed are water, Ringer's solution and isotonic sodium chloride solution. In addition, sterile, fixed oils are conventionally employed as a solvent or suspending medium. For this purpose any bland fixed oil may be employed including synthetic mono- or diglycerides. In addition, fatty acids such as oleic acid find use in the preparation of injectables.
The pharmaceutical composition and method of the present invention may further comprise other therapeutically active compounds which are usually applied in the treatment of the above mentioned pathological conditions. Selection of the appropriate agents for use in combination therapy may be made by one of ordinary skill in the art, according to conventional pharmaceutical principles. The combination of therapeutic agents may act synergistically to effect the treatment or prevention of the various disorders described above. Using this approach, one may be able to achieve therapeutic efficacy with lower dosages of each agent, thus reducing the potential for adverse side effects.
When other therapeutic agents are employed in combination with the compounds of the present invention they may be used for example in amounts as noted in the Physician Desk Reference (PDR) or as otherwise determined by one of ordinary skill in the art.
In the treatment or prevention of conditions which require HIV inhibition or HIV integrase enzyme inhibition an appropriate dosage level will generally be about 0.01 to 500 mg per kg patient body weight per day which can be administered in single or multiple doses. Preferably, the dosage level will be about 0.1 to about 250 mg/kg per day; more preferably about 0.5 to about 100 mg/kg per day. A suitable dosage level may be about 0.01 to 250 mg/kg per day, about 0.05 to 100 mg/kg per day, or about 0.1 to 50 mg/kg per day. Within this range the dosage may be 0.05 to 0.5, 0..5 to 5 or 5 to 50 mg/kg per day. For oral administration, the compositions are preferably provided in the form of tablets containing 1.0 to 1000 milligrams of the active ingredient, particularly 1.0, 5.0, 10.0, 15.0, 20.0, 25.0, 50.0, 75.0, 100.0, 150.0, 200.0, 250.0, 300.0, 400.0, 500.0, 600.0, 750.0, 800.0, 900.0, and 1000.0 milligrams of the active ingredient for the symptomatic adjustment of the dosage to the patient to be treated. The compounds may be administered on a regimen of 1 to 4 times per day, preferably once or twice per day.
It will be understood, however, that the specific dose level and frequency of dosage for any particular patient may be varied and will depend upon a variety of factors including the activity of the specific compound employed, the metabolic stability and length of action of that compound, the age, body weight, general health, sex, diet, mode and time of administration, rate of excretion, drug combination, the severity of the particular condition, and the host undergoing therapy.
In order that the nature of the present invention may be more clearly understood preferred forms thereof will now be described by reference to the following non- limiting Examples.
1. ROUTES OF SYNTHESIS
1.1 For Core Formation:
Scheme 1: Preparation of the pyrimidinone bicyclic system
Figure imgf000026_0001
International Patent Application No. PCT/AU2007/001980 in the name of Avexa.
The amino compound can be reacted as in scheme 1 with the fumarate derivative or suitable analogues of fumarate where for example the acetyl groups can be replaced by other suitable leaving groups such as tosyl or mesyl. The reaction can be carried out in a suitable solvent such as methanol, DME, DMA, DMSO, chloroform, THF or dioxane. The reaction can be heated or subject to microwave irradiation (see for example B. R. Roberts & C. R. Strauss, Ace. Chem. Res. 2005, 38, 653-661, "Toward Rapid, 'Green' Predictable Microwave-assisted Synthesis"). The reaction can be performed in the absence or presence of catalytic amounts of acid or base. 1.2 GENERIC SCHEMES: Azole formation
1.2.1 For Hl=l,3-oxazole and 1,3-thiazole, and imidazole:
Scheme 2: Preparation of the 1,3-oxazole and 1,3-thiazole via Gabriel or Robinson-Gabriel method
Figure imgf000027_0001
1. International Patent Application No. PCT/AU2007/001980 in the name of Avexa.
2. Editor R.R. Gupta, Microwave- Assisted Synthesis of Heterocycles, Springer Berlin / Heidelberg. ISSN: 1861-9282 (Print) 1861-9290 (Online), 2006 Scheme 3: Preparation of the imidazole
Figure imgf000028_0001
Editor R.R. Gupta, Microwave- Assisted Synthesis of Heterocycles, Springer Berlin / Heidelberg. ISSN: 1861-9282 (Print) 1861-9290 (Online), 2006
Scheme 4: Preparation of the 1,3-thiazole via Hantzsch method
Figure imgf000028_0002
1. Wawzonek, O., In; Heterocyclic Compounds, John Wiley and Sons, New York, 1975.
2. Tetrahedron Letters, 1994, 35(16), 2473-2476 3. Bioorg. Med. Chem. Chem. Lett. 2003, 13(24), 4467-72.
Scheme 5: Alternative preparation of the 1,3-thiazoIe
Figure imgf000029_0001
Tetrahedron. 2001, 57 (20), 4323-4336.
Org. Lett. 2003, 5(16), 2785-88;
Synthesis. 1976, 696-697
Scheme 6: Alternative preparation of the 1,3-thiazoIe from aldehyde For Hl=l,3,4-oxadiazole and 1,3,4-oxathiazole:
Figure imgf000029_0002
International Patent Application No. PCT/AU2007/001980 in the name of Avexa. Scheme 7: Preparation of the l,3»4-oxadiazole and 1,3,4-thiadiazole
For Hl=l,2,4-oxadiazole
Figure imgf000030_0001
Scheme 8: Preparation of the 1,2,4-oxadiazole
Figure imgf000031_0001
International Patent Application No. PCT/AU2007/001980 in the name of Avexa.
Scheme 9: Preparation of the 1,2,4-oxadiazole (reversed roles)
Figure imgf000032_0001
International Patent Application No. PCT/AU2007/001980 in the name of Avexa.
1.3 GENERIC SCHEMES: Preparation of ketoamines
Scheme 10: Preparation of l-Amino-3-aryl-propan-2-one hyrdrochloride
Figure imgf000032_0002
Tetrahedron, 1994, 50 (21), 6287-6298 and Chem. Pharm. Bull. 1984, 32 (7), 2536-
2543 Examples:
R = 3-F.4-C1; 3 C1,4-F
R = 4-F; 2,4-Cl2 Avexa's patent R = 4-Cl: known. Chem. Pharm. Bull. 1984, 32 (7), 2536-2543
R = 2-NO2 known: Tetrahedron 1994, 50(21) 6287-6298
Scheme 11: Alternative preparation of l-Amino-3-aryl-propan-2-one hyrdrochloride
Figure imgf000033_0001
US20040229909; 'Antiviral agent", Shionog
Scheme 12: Alternative preparation of l-Amino-3-aryl-propan-2-one hyrdrochloride
Figure imgf000033_0002
Journal of Organic Chemistry (2003), 68(7), 2798-2802. (for ketoazide from chloroketone)
Scheme 13: Alternative preparation of l-Amino-3-aryl-propan-2-one hyrdrochloride
Figure imgf000034_0001
Scheme 14: Preparation of o-ester ketoamine
Figure imgf000034_0002
J. Org. Chem. 1991, 56(24), 6933-6937
Scheme 15: Preparation of o-aminomethyl ketoamine
Figure imgf000035_0001
J. Org. Chem. 1991, 56(24), 6933-6937
1.4 GENERIC SCHEMES: Derivatization
Scheme 16: Derivatization of thiazole-imidazole examples: Variation at position 3 (Metal mediated coupling)
Figure imgf000036_0001
International Patent Application No. PCT/AU2007/001980 in the name of Avexa.
Scheme 17: Derivatization of N-substituents of imidazole
Figure imgf000037_0001
Scheme 18: Derivatization of N-substituents of imidazole
Figure imgf000037_0002
Scheme 19: Derivatization of N-substituents of imidazole
Figure imgf000038_0001
Scheme 20: Derivatization of thiazole-imidazole examples: Variation at position 3 (Vilsmeier reaction)
Figure imgf000039_0001
Scheme 21: Derivatization of thiazole-imidazole examples: Variation at position 3 (via carboxamide)
Figure imgf000040_0001
Scheme 22: Derivatization of the aromatic ring: metal mediated couplings with R2R3NH
Figure imgf000040_0002
Scheme 23: Derivatization of the aromatic ring: metal mediated couplings with R2XH
Figure imgf000041_0001
Scheme 24: Derivatization of the aromatic ring: metal mediated couplings with CO2
Figure imgf000041_0002
Scheme 25: Derivatization of the aromatic ring: metal mediated couplings with DMF
Figure imgf000042_0001
Scheme 26: Derivatization of the aromatic ring: amide formation in ortho position
Figure imgf000042_0002
Scheme 27: Derivatization of the aromatic ring: amine in ortho position
Figure imgf000043_0001
Scheme 28: Derivatization of thiazole by coupling
Figure imgf000043_0002
2 SYNTHETIC EXAMPLES
HPLC conditions
All HPLC measurements were performed on a Varian ProStar System.
Column:
Waters Symmetry® Cl 8 Column (Part No WAT045905) at 25° C, flow rate 1 mL/min, spectra measured at 254 nM
Buffers:
Buffer A: 100% acetonitrile, Buffer B: 0.1% aqueous TFA
Gradient: (linear gradient curve 6)
5 min 10 min 10min
10%A:90%B 10%A:90%B 100%A:0%B - 100%A:0%B
Example 1: Preparation of 6-acetoxy-5-oxo-l-(2-oxo-2-piperidin-l-yl-ethyl)-l,5- dihydro-imidazo[l,2-a]pyrimidine-7-carboxylic acid methyl ester
Figure imgf000044_0001
To a solution of compound 6-acetoxy-5-oxo-l,5-dihydro-imidazo[l,2-a]pyrimidine-7- carboxylic acid methyl ester (PCT/AU2007/001980) (2.0 g, 7.96mmol) in anhydrous acetonitrile (20 ml) was added compound 2-chloro-l-piperidin-l-yl-ethanone (2.0 g, 12.42mmol), K2CO3 (1.7g, 12.32mmol), KI (133mg, 0.8mmol) successively. The mixture was heated at refluxed for 3hours. After cooling to the room temperature, the mixture was filtered and the filtrate was concentrated under reduced pressure. The resulting residue was recrystallized from ethyl acetate to give titled compound (2.0 g, yield 66.7 %). 1H NMR (300 MHz, DMSO-d6) 1.40-1.52 (m, 2H), 1.56-1.70 (m, 4H), 2.27 (s, 3H), 3.38-3.46 (m, 2H), 3.46-3.53 (m, 2H), 3.84 (s, 3H), 5.13 (s, 2H), 7.70 (d, J= 2.6 Hz, IH), 7.81 (d, J= 2.7 Hz, IH)
Example 2: Preparation of 6-hydroxy-5-oxo-l-(2-oxo-2-piperidin-l-yl-ethyl)-l,5- dihydro-imidazo[l,2-a]pyrimidine-7-carboxylic acid methyl ester
N N COOMe
O
Figure imgf000045_0001
To a solution of the product of example 1 (3.6g, 9.57 mmol) in MeOH (40 ml) was added K2CO3 (2.7g, 19.5mol). The mixture was stirred at room temperature for about 1 hour and then filtered. The filtrate was concentrated into dryness to give the titled product (crude yield 100 %) as yellow solid, which was used directly in next step.
Example 3: Preparation of 6-benzyloxy-5-oxo-l-(2-oxo-2-piperidin-l-yl-ethyl)-l,5- dihydro-imidazo[l,2-a]pyrimidine-7-carboxylic acid methyl ester
Figure imgf000045_0002
The crude product of example 2 was dissolved in DMF (50 ml) and then K2CO3 (3.3 g, 0.024 mol) was added. After stirring at room temperature for about 0.5 hours, benzyl bromide (4.0 g, 0.0234 mol) was added drop-wise. Then the mixture was heated at 8O0C for another 5 hours. After cooling to room temperature, the solids were filtered off and washed with ethyl acetate. The filtrate was diluted with EA, washed with water and then brine, dried and concentrated. The residue was purified by column chromatography (CH2Cl2/MeOH=50/l) to give the titled compound (2.0 g, 2-step yield 49.3%). 1H NMR (300 MHZ5 DMSO-/) 1.40-1.51 (m, 2H), 1.52-1.70 (m, 4H), 3.37-3.53 (m, 4H), 3.78 (s, 3H), 5.03 (s, 2H), 5.07 (s, 2H), 7.30-7.44 (m, 5H), 7.62 (d, J= 2.7 Hz, IH), 7.77 (d, J= 2.7 Hz, IH) .
MS (ESI+) m/z 447 (M+23)
Example 4: Preparation of 6-benzyIoxy-5-oxo-l-(2-oxo-2-piperidin-l-yl-ethyl)-l,5- dihydro-imidazo[l,2-a]pyrimidine-7-carboxylic acid
H
Figure imgf000046_0001
A mixture of the product of example 3 (1.0 g, 2.358mmol) and LiOH (aq., IN, 14ml) in THF (10 ml) was stirred at room temperature for about 3 hours. Then diluted HCl (IN) was added dropwise to adjust the pH ~2. The resulting solids were collected by filtration, washed with ethyl acetate and dried to give the titled compound (740mg, yield 76.3 %).
1H NMR (SOO MHz, DMSO-/) 1.40-1.52 (m, 2H), 1.54-1.68 (m, 4H), 3.38-3.54 (m, 4H), 5.02 (s, 2H), 5.08 (s, 2H), 7.28-7.43 (m, 3H), 7.43-7.50 (m, 2H), 7.60 (d, J= 2.6 Hz, IH), 7.74 (d, J= 2.6 Hz, IH), 13.60 (s, IH)
MS (ESI") m/z 409(M-I)
Example 5: Preparation of 6-benzyloxy-5-oxo-l-(2-oxo-2-piperidin-l-yl-ethyl)-l,5- dihydro-imidazo[l,2-a]pyrimidine-7-carboxy lie acid [3-(4-fluoro-phenyl)-2-oxo- propyl]-amide
Figure imgf000047_0001
To a solution of the product of example 4 (1.0 g, 2.4mmol) in THF (10 ml) was added compound l-amino-3-(4-fluoro-phenyl)-propan-2-one hydrochloride (1.0 g, 4.9mmol), EDCI.HC1 (560mg, 2.9mmol), HOBt (400mg, 2.9mmol) and TEA (Ig, 9.9mmol) successively at room temperature. The mixture was stirred overnight, after which saturated sodium bicarbonate was added and then extracted with ethyl acetate. The extracts were combined, washed with brine, and then dried over sodium sulfate. The product was purified by column chromatography (CH2Cl2/Me0H= 100/1) to give the desired product (540mg, 40%yield).
1H NMR (300 MHz, DMSO-d6) δ 1.38-1.52 (m, 2H), 1.54-1.65 (m, 4H), 3.36-3.54 (m, 4H), 3.84 (s, 2H), 4.18 (d, J= 5.6 Hz, 2H), 5.01 (s, 2H), 5.10 (s, 2H), 7.12 (t, J= 8.9 Hz, 2H), 7.17-7.24 (m, 2H), 7.28-7.36 (m, 3H), 7.47 (dd, J= 1.9, 7.9 Hz, 2H), 7.61 (d, J= 2.8 Hz, IH), 7.73 (d, J= 2.6 Hz, IH), 8.76 (t, J= 5.7 Hz, IH).
MS (ESI") m/z 558(M-I)
Example 6: Preparation of 6-benzyloxy-7-[5-(4-fluoro-benzyl)-oxazol-2-yl]-l-(2- oxo-2-piperidin-l-yl-ethyl)-lH-imidazo[l,2-a]pyrimidin-5-one
Figure imgf000048_0001
To a solution of the product of example 5 (200mg, 0.357mmol) in acetonitrile (3 ml), carbon tetrachloride (330mg, 2.1mmol), triethylamine (180mg, 1.78mmol) and triphenylphosphine (470mg,1.79mmol) were added successively at room temperature. The mixture was stirred for 3 hours .The product was purified by column chromatography (CH2Cl2/MeOH=150/l) to give the titled product (40mg, 21%yield).
1H NMR (300 MHz, DMSO-d6) δ 1.40-1.50 (m, 2H), 1.52-1.68 (m, 4H), 3.36-3.54 (m, 4H), 4.10 (s, 2H), 5.04 (s, 2H), 5.06 (s, 2H), 7.07-7.16 (m, 3H), 7.26-7.34 (m, 5H), 7.34-7.41 (m, 2H), 7.61 (d, J= 2.6 Hz, IH), 7.73 (d, J= 2.6 Hz, IH).
MS (ESI+) m/z 564 (M+23)
Example 7: Preparation of 7-[5-(4-fluoro-benzyl)-oxazol-2-yI]-6-hydroxy-l-(2-oxo- 2-piperidin-l-yl-ethyl)-lH-imidazo[l,2-a]pyrimidin-5-one
Figure imgf000048_0002
To a solution of the product of example 6 (50mg, 0.092mmol) in acetonitrile (2 ml) was added TMSI (150mg, 0.75mmol) drop-wise at room temperature. The mixture was stirred for 8 hours, after which methanol (0.1ml) was added to quench the reaction. Then saturated solution OfNa2S2O3 was added drop-wise till a yellow solid was precipitated. The resulting solids were collected by filtration, washed with ethyl acetate to give the desired product (lOmg, 24%yield).
1 H NMR (300 MHz, CDC13) δ 1.38-1.50 (m, 2H), 1.52-1.68 (m, 4H), 3.35-3.45 (m, 2H), 3.46-3.55 (m, 2H), 4.21 (s, 2H), 5.01 (s, 2H), 7.18 (t, J= 8.9 Hz, 2H), 7.26 (s, IH), 7.35 (dd, J= 5.6, 8.8 Hz, 2H), 7.54 (d, J= 2.6 Hz, IH), 7.64 (d, J= 2.7 Hz, IH), 10.22 (s, IH).
MS (ESI+) m/z AlA (M+23)
Example 8: Preparation of 6-benzyloxy-l-methyl-5-oxo-l,5-dihydro-imidazo[l,2- a]pyrimidine-7-carboxyIic acid methyl ester
Figure imgf000049_0001
Adapted from the procedure of example 3 using 6-hydroxy-l-methyl-5-oxo-l,5- dihydro-imidazo[l,2-a]pyrimidine-7-carboxylic acid methyl ester (AU2007001980).
1H NMR (300 MHz, DMSO-d6) 3.66 (s, 3H), 3.79 (s, 3H), 5.02 (s, 2H), 7.30-7.43 (m, 5H), 7.69 (d, J= 2.6Hz, IH), 7.73 (d, J= 2.7 Hz, IH).
MS (ESI+) m/z 336 (M+23)
Example 9: Preparation of 6-benzyloxy-l-methyl-5-oxo-l,5-dihydro-imidazo[l,2- a]pyrimidine-7-carboxylic acid
Figure imgf000049_0002
Adapted from the procedure of example 4 using the product of example 8.
1H NMR (300 MHz, DMSO-d6) 3.67 (s, 3H), 5.01 (s, 2H), 7.30-7.50 (m, 5H), 7.68 (d, J= 2.6Hz, IH), 7.72 (d, J= 2.6 Hz, IH), 13.50-13.59 (brs, IH).
MS (ESI+) m/z 300 (M+l) Example 10: Preparation of 6-benzyloxy-l-methyl-5-oxo-l,5-dihydro-imidazo[l,2- a] pyrimidine-7-carboxy lie acid [3-(4-chIoro-phenyl)-2-oxo-propyl] -amide
Figure imgf000050_0001
Adapted from the procedure of example 5 using the product of example 9 and 1-amino- 3-(4-chloro-phenyl)-propan-2-one hydrochloride.
1H NMR (300 MHz, DMSO-d6) δ 3.69 (s, 3H), 3.87 (s, 2H), 4.20 (d, J- 5.5 Hz, 2H), 5.00 (s, 2H), 7.21 (d, J= 8.8 Hz, 2H), 7.29-7.40 (m, 5H), 7.45-7.51 (m, 2H), 7.69 (d, J= 2.6 Hz, IH), 7.71 (d, J= 2.6 Hz, IH), 8.71 (t, J= 5.6 Hz, IH)
MS (ESI+) m/z 487(M+23)
Example 11: Preparation of 6-benzyloxy-7-[5-(4-chloro-benzyl)-thiazol-2-yl]-l- methyl-lH-imidazo[l,2-a]pyrimidin-5-one
Figure imgf000050_0002
The product from example 10 (0.23 mmol) and Lawensson's Reagent (57 mg, 0.14 mmol) were mixed with toluene (3 mL) and refluxed for 3 h. The reaction mixture was concentrated in vacuo and flash chromatography afforded the titled product.
1H NMR (300 MHz, DMSO-d6) δ 3.67 (s, 3H), 4.26 (s, 2H), 5.07 (s, 2H), 7.30-7.37 (m, 5H), 7.38-7.52 (m, 4H), 7.66 (d, J= 2.6 Hz, IH), 7.68 (d, J= 2.7 Hz, IH), 7.86 (t, J= 0.7 Hz, IH)
MS (ESI+) m/z 463 (M+ 1) Example 12: Preparation of 7-[5-(4-chloro-benzyl)-thiazol-2-yl]-6-hydroxy-l- methyl-lH-imidazo[l,2-a]pyrimidin-5-one
Figure imgf000051_0001
To a solution of the product of example 11 (0.135mmol) in CH2Cl2 (4 ml) was added FeCl3 (66 mg, 0.402 mmol) at room temperature. The mixture was stirred at room temperature for 2 hours, after which CH2Cl2 was evaporated under reduced pressure and ethyl acetate (30 ml) was added. Then the mixture was washed by IN HCl (10 ml), H2O (10ml) and brine (10 ml) successively, dried over Na2SO4 and concentrated into about 1 ml. The resulting solids were collected by filtration and washed with cold ethyl acetate (2-3 ml) to give the desired product.
1H NMR (300 MHz, DMSO-/) δ 3.61 (s, 3H), 4.30 (s, 2H), 7.34-7.45 (m, 4H), 7.59 (dd, J= 2.7, 5.0 Hz, 2H), 7.91 (s, IH), 10.70-10.84 (brs, IH)
MS (ESI+) m/z 373 (M+l)
HPLC 97.2 %
Example 13: Preparation of 6-benzyloxy-l-methyI-5-oxo-l,5-dihydro-imidazo[l,2- a] py rimidine-7-carboxy lie acid [3-(3,4-dichloro-phenyl)-2-oxo-propy 1] -amide
Figure imgf000051_0002
Adapted from the procedure of example 5 using the product of example 9 and 1-amino- 3-(3,4-dichloro-phenyl)-propan-2-one hydrochloride.
1H NMR (300 MHz, DMSO-/) δ 3.70 (s, 3H), 3.90 (s, 2H), 4.22 (d, J= 5.6 Hz, 2H), 5.00 (s, 2H), 7.17 (dd, J= 8.2, 2.1 Hz, IH), 7.26-7.36 (m, 3H), 7.43-7.51 (m, 3H), 7.57 (d, J= 8.1 Hz, IH), 7.69 (d, J= 2.7 Hz, IH), 7.72 (d, J= 2.7 Hz, IH), 8.74 (t, J= 5.7 Hz, IH). MS (ESI') m/z 497(M-I)
Example 14: Preparation of 6-benzyIoxy-7-[5-(3,4-dichloro-benzyl)-thiazol-2-yl]-l- methyl-lH-imidazo[l,2-a]pyrimidin-5-one
Figure imgf000052_0001
Adapted from the procedure of example 11 using the product of example 13
1H NMR (300 MHz, DMSOd6) δ 3.68 (s, 3H), 4.28 (s, 2H), 5.07 (s, 2H), 7.29-7.36 (m, 4H), 7.45-7.52 (m, 2H), 7.59-7.70 (m, 4H), 7.89 (s, IH)
MS (ESI+) m/z 497 (M+l)
Example 15: Preparation of 7-[5-(3,4-Dichloro-benzyl)-thiazol-2-yl]-6-hydroxy-l- methyl-lH-imidazo[l,2-a]pyrimidin-5-one
Figure imgf000052_0002
Adapted from the procedure of example 12 using the product of example 14
1H NMR (300 MHz, DMSO-d6) δ 3.62 (s, 3H), 4.32 (s, 2H), 7.36 (dd, J= 1.7, 8.5 Hz, IH), 7.55-7.74 (m, 4H), 7.93 (s, IH), 10.75 (s, IH)
MS (MALDI) m/z 407 (M+l), 429 (M+23), 445 (M+39) Example 16: Preparation of 6-benzyloxy-l-methyl-5-oxo-l,5-dihydro-imidazo[l,2- a]pyrimidine-7-carboxylic acid [3-(4-chloro-3-fluoro-phenyl)-2-oxo-propyl]-amide
Figure imgf000053_0001
Adapted from the procedure of example 5 using the product of example 9 and example 26.
1H NMR (300 MHz, DMSO-/) δ 3.70 (s, 3H), 3.90 (s, 2H), 4.21 (d, J= 5.7 Hz, 2H), 5.00 (s, 2H), 7.05 (dd, J= 8.1, 1.8 Hz, IH), 7.24 (dd, J= 10.5, 1.8 Hz, IH), 7.28-7.36 (m, 3H), 7.46-7.54 (m, 3H), 7.68-7.72 (m, 2H), 8.73 (t, J= 5.4 Hz, IH).
MS (ESI+) m/z 505 (M+23)
Example 17: Preparation of 6-benzyloxy-7-[5-(4-chloro-3-fluoro-benzyl)-thiazoI-2- yl]-l-methyl-lH-imidazo[l,2-a]pyrimidin-5-one
Figure imgf000053_0002
Adapted from the procedure of example 11 using the product of example 16
1H NMR (300 MHz, DMSO-c/6) δ 3.68 (s, 3H), 4.28 (s, 2H), 5.06 (s, 2H), 7.19 (dd, J= 8.1, 1.8 Hz, IH), 7.30-7.35 (m, 3H), 7.40 (dd, J= 10.2, 1.8 Hz, IH), 7.47-7.50 (m, 2H),
7.56 (t, J= 7.9 Hz, IH), 7.65-7.68 (m, 2H), 7.88 (s, IH)
MS (ESI+) m/z 481(M+1) Example 18: Preparation of 7-[5-(4-Chloro-3-fluoro-benzyl)-thiazol-2-yl]-6- hydroxy-l-methyl-lH-imidazo[l,2-a]pyrimidin-5-one
Figure imgf000054_0001
Adapted from the procedure of example 12 using the product of example 17
1H NMR (300 MHz, DMSO-/) δ 3.62 (s, 3H), 4.33 (s, 2H), 7.23 (dd, J= 7.8, 1.8 Hz, IH), 7.45 (dd, J= 10.2, 1.8 Hz, IH), 7.54-7.62 (m, 3H), 7.93 (s, IH), 10.76 (s, IH)
MS (ESI+) m/z 413 (M+23)
Example 19: Preparation of 6-benzyloxy-l-methyI-5-oxo-l,5-dihydro-imidazo[l,2- a]pyrimidine-7-carboxylic acid [3-(4-fluoro-phenyl)-2-oxo-propyl]-amide
Figure imgf000054_0002
Adapted from the procedure of example 5 using the product of example 9 and 1-amino- 3 -(4-fluroro-phenyl)-propan-2-one hydrochloride.
1H NMR (300 MHz, DMSO-/) 3.69 (s, 3H), 3.85 (s, 2H), 4.20 (d, J= 5.6 Hz, 2H), 5.00 (s,2H), 7.13 (t, J= 8.9 Hz, 2H), 7.22 (dd, J= 8.7, 5.9 Hz, 2H), 7.26-7.40 (m, 3H), 7.48 (dd, J= 7.7, 1.8 Hz, 2H), 7.69 (d, J= 2.5 Hz, IH), 7.71 (d, J= 2.5 Hz, IH), 8.69 (t, J= 5.3 Hz, IH).
MS (ESI") m/z 447 (M-I) Example 20: Preparation of 6-benzyloxy-7-[5-(4-fluoro-benzyl)-thiazol-2-yl]-l- methyl-lH-imidazo[l,2-a]pyrimidin-5-one
Figure imgf000055_0001
Adapted from the procedure of example 11 using the product of example 19
1H NMR (300 MHz, CDCl3) 3.83 (s, 3H), 4.16 (s, 2H), 5.26 (s, 2H), 6.90-7.06 (m, 3H), 7.12-7.22 (m, 2H), 7.27-7.34 (m, 3H), 7.41-7.52 (m, 2H), 7.60 (d, J= 2.6 Hz, IH), 7.78 (s, IH).
MS (ESI+) m/z AAl (M+ 1)
Example 21: Preparation of 7-[5-(4-fluoro-benzyl)-thiazol-2-yl]-6-hydroxy-l- methy 1-1 H-imidazo [1 ,2-a] pyrimidin-5-one
Figure imgf000055_0002
Adapted from the procedure of example 12 using the product of example 20
1H NMR (300 MHz, DMSO-d6) 3.61 (s, 3H), 4.29 (s, 2H), 7.17 (t, J= 8.9 Hz, 2H), 7.39 (dd, J= 5.7, 8.7 Hz, 2H), 7.56-7.62 (m, 2H), 7.90 (s, IH), 10.78 (s, IH)
MS (ESI+) m/z 379 (M+23) Example 22: Preparation of (4-chloro-3-fluoro-phenyl)-acetonitrile
Figure imgf000056_0001
To a boiling solution of 4-chloro-3-flurorobenzyl bromide (1Og, 44.8mmol) in absolute ethanol (40 ml) was added a solution of potassium cyanide (2.9g, 44.8mmol) in water (6ml). The mixture was refluxed for 1.5 hours, then most of the ethanol was distilled off under reduced pressure and the cooled residue poured into water. The solution was extracted three times with ether. The combined organic layers were washed with brine, dried and concentrated into dryness to give the titled product (7.8g, 93% yield)
1H NMR (300 MHz, DMSO-d6) 4.09 (s, 2H), 7.25 (ddd, J= 0.8, 2.0, 8.2 Hz, IH), 7.43 (dd, J= 2.0, 10.0 Hz, IH), 7.64 (t, J=8.2 Hz, IH).
MS (ESI") m/z 168 (M-I)
Example 23: Preparation of (4-chloro-3-fluoro-phenyl)-acetic acid
Figure imgf000056_0002
A mixture of the product of example 22 (7.8g, 0.046 mol), water (7.5 ml), concentrated sulfuric acid (7.5ml) and acetic acid (7.5ml) was heated at reflux for 2 hours . After being cooled to room temperature, the mixture was poured into ice-water. The resulting solids were collected by filtration and washed by diethyl ether to give the titled product (6.8g, 79%)
1H NMR (300 MHz, DMSO-/) 3.64 (s, 2H), 7.14 (ddd, J= 0.6, 2.1, 8.2 Hz, IH), 7.34 (dd, J= 2.1, 10.6 Hz, IH), 7.52 (t, J=8.1 Hz, IH).
MS (ESI") m/z 187 (M-I) Example 24: Preparation of (4-chloro-3-fIuoro-phenyl)-acetyI chloride
Figure imgf000057_0001
A mixture of the product of example 23 (4.9g, 26mmol) with thionyl chloride (50 ml) was refluxed for 3 hours. Then thionyl chloride was removed under reduced pressure. The residue was redistilled under reduced pressure to give crude titled acyl chloride, which was used directly in the next step reaction. (3.2g, 60%yield)
Example 25: Preparation of 5-(4-chloro-3-fluoro-benzyI)-oxazoIe-4-carboxylic acid ethyl ester OEt
Figure imgf000057_0002
To a solution of potassium tert-butoxide (3.5g, 31.25mmol) in THF (50 ml) was added ethyl isocyanoacetate (3.5g, 31.25mmol) dropwise at 5°C. After stirring for 45 minutes, the product of example 24 (3.2g, 15.5mmol) was added dropwise. Then the mixture was stirred overnight at room temperature. The reaction mixture was filtered and the filtrate was concentrated. The residue was purified by column chromatography (PE/EA=5/1) to give the titled compound (2.5g, 67.7yield)
1H NMR (300 MHz, DMSO-d6) 1.29 (t, J= 7.1 Hz, 3H), 4.30 (q, J= 7.1 Hz, 2H), 4.41 (s, 2H), 7.11 (ddd, J= 0.6, 2.1, 8.3 Hz, IH), 7.34 (dd, J= 2.0, 10.4 Hz, IH), 7.54 (t, J= 8.1 Hz, IH), 8.40 (s, IH).
MS (ESI+) m/z 306 (M+23) Example 26: Preparation of l-amino-3-(4-chloro-3-fluoro-phenyI)-propan-2-one hydrochloride
Figure imgf000058_0001
A mixture of the product of example 25 (2.5g, 10.53mmol) with hydrochloride acid (6 mol/1, 30 ml) was refluxed for about 3 hours and then cooled to room temperature. The solids were collected by filtration, washed with EA and dried to give the titled product (1.7g, 81%)
1H NMR (300 MHz, DMSO-d6) 3.96 (s, 2H), 4.03 (s, 2H), 7.10 (dd, J= 1.9, 8.2 Hz, IH), 7.29 (d, J= 1.9, 10.4 Hz, IH), 7.56 (t, J= 8.1 Hz, IH), 8.15-8.42 (brs, 3H).
MS (ESI+) m/z 202 (M+ 1 )
Example 27: Preparation of 5-fluoro-2,N,N-trimethyl-benzenesuIfonamide
Figure imgf000058_0002
A mixture of 5-fluoro-2-methylbenzene sulfonylchloride (2.1 mL, 14.3 mmol) in THF (18 mL) and 2 M dimethylamine in methnol (18 mL), was stirred at room temperature for 0.5h. The resulting mixture was concentrated under reduced pressure to give a crude product as a mixture of white solid and colourless oil. The crude product was purified by column (30% EtOAc in Hexane) to give the titled compound as a colourless oil (3.09 g, 99% yield). Example 28: Preparation of 2-bromomethyl-5-fluoro-N,N-dimethyl- benzenesulfonamide
Figure imgf000059_0001
To a solution of the product of example 27 (3g, 13.8 mmol) in DCE (40 mL), was added n-bromosuccinamide (2.8g, 15.19 mmol) and stirred at 80°C for 5 min before AIBN (300mg, O.Olβmmol) was added and heated at 8O0C for 5 h (95% conversion). The reaction mixture was concentrated under reduced pressure to give a crude product as a yellow solid. The crude product was purified by column (10-20% ethylacetate in hexane) to give the titled product. (50% yield)
MS (ESI+) m/z 296, 298 Br [M+H+]
Example 29: Preparation of 2-cyanomethyl-5-fluoro-N,N-dimethyl- benzenesulfonamide
Figure imgf000059_0002
A mixture of the product of example 28 (-90% pure, 729mg, 2.46 mmol) in a mixture of DMF:H2O (3mL:2mL) and sodium cyanide (362mg, 7.4 mmol) was stirred at room temperature overnight. The resulting mixture was quenched with saturated NaHCO3 (12 mL) and extracted with ethylacetate (3x30 mL). The extracts were combined and washed with saturated NaCl (2x30 mL) and water (2x30 mL). The organic layer was separated, dried over anhydrous MgSO4 and concentrated under reduced pressure to give the titled product as colourless oil (503mg, 85% yield).
1H NMR CDCl3, 300 MHz : δ 2.86 (s, 6H, -N(CHj)2), 4.19 (s, 2H, -CH2C≡N), 7.35 (m, IH, ArH), 7.69 (m, 2H, ArH).
MS (ESI+) m/z 243 [M+H+], 265 [M+Na+] Example 30: Preparation of l-chloro-3-(4-fluoro-phenyl)-propan-2-one
Figure imgf000060_0001
1. To a chilled (O0C) solution of 4-fluoro-phenylacetyl chloride (14.07 mmol, 2.43g) in diethylether (15mL), was added a cold solution of freshly distilled diazomethane in diethylether (16 mmol) and stirred at 0°C for 15 min and then at room temperature for 15 min. The resulting mixture of diazoketone was used in the next step without further purification (confirmed by mass spec).
2. One third of the above diazoketone solution (in diethyl ether) was cooled to -300C and 4M HCl in dioxane (3 mL) was added and stirred at -300C for 0.5h and then at room temperature for 0.5h. The reaction mixture was quenched with water (20 mL) and extracted with ethyl acetate (30 mL). The organic layer was separated and dried over anhydrous MgSO4 and concentrated under reduced pressure to give a crude product as slightly yellow oil. The crude product was purified by column chromatography (15-20 % EtOAc in hexane) to give the titled compound with R/= 0.016 (200mg, 19% yield)
1H NMR: CDCl3, 300 MHz : δ 3.88 (s, 2H, -CH2Cl), 4.11 (s, 2H, -CH2(C=O)), 7.04 (t, J= 8.7 Hz, 2H, ArH), 7.20 (t, dd= 4.8, 8.8 Hz, 2H, ArH).
Example 31: Preparation of 2-[3-(4-fluoro-phenyl)-2-oxo-propyl]-isoindole-l,3- dione
Figure imgf000060_0002
To a solution of the product of example 30 (85 mg, 0.45mmol) in DMF (1 mL), under a nitrogen atmosphere, was added potassium salt of phthalamide (96mg, 0.52 mmol). The resulting mixture was stirred at room temperature for Ih. The reaction mixture was quenched with a mixture of ice-water and filtered. The slightly pink solid was washed with water to give the titled compound as a white product (79 mg, 62% yield).
1H NMR CDCl3, 300 MHz : δ 3.82 (s, 2H, -CH2N-), 4.51 (s, 2H, -CH2(C=O)), 7.04 (m, 2H, ArHF), 7.23 (m, 2H, ArHF), 7.74 (m, 2H, ArH), 7.86 (m, 2H, ArH).
MS (ESI+) m/z 298 [M+H+] Example 32: Preparation of 2-Chloro-l-(2, 6-dimethyl-morpholin-4-yI)-ethanone
Figure imgf000061_0001
2,6-Dimethylmorpholine (a mixture of trans- and cis-isomers (1.0 g, 8.7 mmol) and TEA (1.34 ml, 9.6 mmol) were dissolved in anhydrous ether (50 ml) and cooled in ice bath. To the above mixture was added dropwise a solution of chloroacetyl chloride(0.69 ml, 8.7 mmol). Then the mixture was warmed to room temperature and stirred for 3 hours. The mixture was washed with water, dried and evaporated under reduced pressure. The residue was purified by column chromatography (EA/PE=1/1) to afford the title compound (0.79 g, yield 47.5 %).
1H NMR (300 MHz, DMSO-/) δ 1.09 (d, J= 6.1 Hz, 6H), 2.29 (dd, J= 11.2, 13.0 Hz, IH), 2.72 (dd, J= 10.9, 13.3 Hz, IH), 3.35-3.58 (m, 2H), 3.73 (dt, J= 2.0, 13.3 Hz, IH), 4.19 (dt, J= 2.0, 12.9 Hz, IH), 4.39 (s, 2H)
Example 33: Preparation of 6-Acetoxy-l-[2-(2, 6-dimethyl-morpholin-4-yl) -2-oxo- ethyl]-5-oxo-l, 5-dihydro-imidazo[l,2-a]pyrimidine-7-carboxylic acid methyl ester
Figure imgf000061_0002
The title compound was prepared by adapting methods described in example 18.1.1.3 of International patent Application No. PCT/AU2007/001980 in the name of Avexa, using the product of example 32.
1H NMR (300 MHz, DMSO-/) δ 1.09 (d, J= 6.1 Hz, 3H), 1.15 (d, J= 6.2 Hz, 3H), 2.26 (s, 3H), 2.35 (t, J= 11.9 Hz, IH), 2.81 (dd, J= 10.3, 12.6 Hz, IH), 3.39-3.54 (m, IH), 3.55-3.72 (m, IH), 3.83 (s, 3H), 3.89 (d, J= 13.8 Hz, IH), 4.15 (d, J= 12.1 Hz, IH), 5.05 (d, J= 16.7 Hz, IH), 5.28 (d, J= 17.0 Hz, IH), 7.68 (d, J= 2.6 Hz, IH), 7.81 (d, J= 2.6 Hz, IH). MS (ESI+) m/z 407 (M+l)
Example 34: Preparation of 6-Benzyloxy-l-[2-(2, 6-dimethyl-morpholin-4-yl)-2- oxo-ethyl] -5-oxo-l ,5-dihy d ro-imidazo [ 1 ,2-a] py rimidine-7-carboxylic acid methyl ester
Figure imgf000062_0001
The title compound was prepared by adapting methods described for example 8.1 of International patent Application No. PCT/AU2007/001980 in the name of Avexa, using the product of Example 33.
1H NMR (300 MHz, DMSO-d6) δ 1.09 (d, J= 6.2 Hz, 3H), 1.13 (d, J= 6.2 Hz, 3H), 2.33 (dd, J= 11.0, 13.0 Hz, IH), 2.78 (dd, J= 10.6, 12.7 Hz, IH), 3.40-3.65 (m, 2H), 3.77 (s, 3H), 3.85 (d, J= 12.5 Hz, IH), 4.14 (d, J= 12.5 Hz, IH), 4.94-5.06 (m, 3H), 5.22 (d, J= 16.9 Hz, IH), 7.26-7.45 (m, 5H), 7.58 (d, J= 2.7 Hz, IH), 7.76 (d, J= 2.6 Hz, IH).
MS (ESf) m/z 455 (M+l)
Example 35: Preparation of 6-Benzyloxy-l-[2-(2,6-dimethyl-morpholin-4-yl)-2 - oxo-ethyI]-5-oxo- l,5-dihydro-imidazo[l,2-a]pyrimidine-7-carboxyIic acid
The title compound was prepared by adapting methods described for example 8.2 of International patent Application No. PCT/AU2007/001980 in the name of Avexa, using the product of example 34.
Figure imgf000063_0001
1H NMR (300 MHz, DMSO-d6) δ 1.09 (d, J= 6.2 Hz, 3H), 1.14 (d, J= 6.2 Hz, 3H), 2.34 (dd, J= 10.8, 12.9 Hz, IH), 2.78 (dd, J= 10.8, 13.1 Hz, IH), 3.41-3.53 (m, IH), 3.54-3.68 (m, IH), 3.87 (d, J= 12.9 Hz, IH), 4.14 (d, J= 12.6 Hz, IH), 4.94-5.04 (m, 3H), 5.23 (d, J= 16.9 Hz, IH), 7.29-7.42 (m, 3H), 7.43-7.49 (m, 2H), 7.59 (d, J= 2.7 Hz, IH), 7.75 (d, J= 2.6 Hz, IH), 13.64 (s, IH).
MS (ESI+) m/z 463 (M+23)
Example 36: Preparation of 6-Benzyloxy-l-[2-(2, 6-dimethyl-morpholin-4-yl) -2- oxo-ethyl] -5-oxo- 1, 5-dihydro-imidazo[l,2-a]pyrimidine-7-carbothioic acid
Figure imgf000063_0002
A mixture of the product of example 35 (2.2Og, 5mmol) and CDI (1.22 g, 7.5mmol) in dry DMF (10 ml) was stirred at 2O0C for 4h. Then NaSH (0.85 g 15mmol) was added in one portion and the resulting mixture was stirred for another 12h. Hydrochloric acid (lmol/1, 100ml) was added to quench the reaction. The resulting solids were collected by filtration, washed with water and dried in vacuo to give the crude carbothioic acid, which was used directly in the next step.
MS (ESF) m/z 455 (M-I)
Example 37: Preparation of 3-(3, 4-Dichloro-phenyl)-propionaIdehyde
Figure imgf000064_0001
To a solution of 1, 2-dichloro-4-iodobenzene (5.44 g, 20 mmol) in DMF (60 ml) was added Bu4NCl (5.56 g, 20 mmol), propenol (4.64 g, 80 mmol), Pd(OAc)2 (224 mg, 1 mmol) and NaHCO3 (10.0 g, 120 mmol) successively at room temperature. The mixture was heated at 50 0C for 12 hour. After cooling to the room temperature, the mixture was poured into ice- water, extracted with DCM three times. The combined organic layers were washed with brine, dried over Na2SO4 and concentrated under reduced pressure. The residue was purified by column chromatography using PE/EA (20/1) as eluent to afford the title compound (2.01 g, yield 49.8 %).
1H NMR (300 MHz, DMSO-/) δ 2.75-2.90 (m, 4H), 7.24 (dd, J= 1.5, 8.4 Hz, IH), 7.44-7.58 (m, 2H), 9.69 (s, 1 H).
Example 38: Preparation of 2-Bromo-3-(3, 4-dichloro-phenyl)-propionaldehyde
Figure imgf000064_0002
To a solution of the product of example 37 (10 mmol, 2.0 g) in a mixed solvent of DCM (40ml) with dioxane (4.0 ml) was added TMSBr (15 mmol, 2.3 g) at room temperature. After the mixture was kept at 25 0C for one hour, bromine (1.6 g, 10.0 mmol) was added. Another one hour later, the mixture was poured into water (50 ml) and extracted with DCM three times. The combined organic layers were washed with brine, dried and evaporated into dryness to give the crude title product, which was used directly in the next step reaction. 1H NMR (300 MHz, DMSO-d6) δ 3.12 (dd, J= 8.8, 14.7 Hz, IH), 3.49 (dd, J= 5.8, 14.7 Hz, IH), 5.02 (ddd, J= 1.8, 5.9, 8.8 Hz, IH), 7.31 (dd, J= 2.2, 8.4 Hz, IH), 7.59 (d, J= 8.4 Hz, IH), 7.62 (d, J= 2.0 Hz, IH), 9.50 (d, J= 1.8 Hz, IH)
Example 39: Preparation of 6-Benzyloxy-l-[2-(2,6-dimethyl-morpholin-4 -yl)-2- oxo-ethyI]-5-oxo-l,5-dihydro-imidazo[l,2-a]pyrimidine-7-carbothioic acid S-[2- (3,4-dichloro-phenyl)-l-formyI-ethyl] ester
Figure imgf000065_0001
To a solution of the product of example 36 (550 mg, 1.2 mmol) in CH2Cl2 (4 ml) was added the product of example 38 (506 mg, 1.8 mmol) and bis(dimethylamino)naphthalene (385 mg, 1.8 mmol) successively. The mixture was refluxed for 1 h and then evaporated into dryness. The resulting residue was purified by column chromatography using DCM/MeOH (20/1) as eluent to afford the crude title compound (448 mg, crude yield 56 %).
MS (ESI+) m/z 657 (M[35] +l), 659 (M[37]+l)
Example 40: Preparation of 6-Benzyloxy-7-[5-(3, 4-dichloro-benzyl)-thiazol-2-yl] - l-[2-(2,6-dimethyl-morpholin-4-yl)-2-oxo-ethyl]-lH-imidazo[l,2-a]pyrimidin-5- one
Figure imgf000065_0002
A stirred solution of the product of example 39 (448 mg, 0.68 mmol) and NH4OAc (1.00 g, 13.6 mmol) in AcOH (5 ml) was heated at 80-90 °C for 5 h. Then the mixture was poured into water (20 ml), and then NaOH (10 % aq.) was added to adjust pH~10. The mixture was extracted with ethyl acetate. The combined organic extracts were dried and evaporated in vacuo. The residue was purified by column chromatography using EA as eluent to afford the title compound (200 mg, 46.0 %)
1H NMR (300 MHz, CDCl3) δ 1.22 (dd, J= 6.5, 10.7 Hz, 6H), 2.41 (t, J= 11.7 Hz, IH), 2.86-2.99 (m, IH), 3.42-3.75 (m, 2H), 3.78-3.90 (m, IH), 4.14 (s, 2H), 4.35 (d, J= 12.9 Hz, IH), 4.95 (d, J= 16.6 Hz, IH), 5.26-5.36 (m, 3H), 7.04 (dd, J= 1.9, 8.5 Hz, IH), 7.18 (d, J= 2.4 Hz, IH), 7.27-7.35 (m, 4H), 7.40 (d, J= 8.2 Hz, IH), 7.43-7.51 (m, 2H), 7.63 (d, J= 2.6 Hz, IH), 7.78 (s, IH).
MS (ESI+) m/z 638 (M[35]+l), 640 (M[37]+l)
Example 41: Preparation of 7-[5-(3, 4-DichIoro-benzyl)-thiazoI-2-yl]-l -[2-(2,6- dimethyl-morpholin-4-yl)-2-oxo-ethyl]-6-hydroxy-lH-imidazo[l,2-a]pyrimidin-5- one
Adapted from the procedure of example 8.5 of PCT/AU2007/001980 using the product of Example 40.
Figure imgf000066_0001
1H NMR (300 MHz, DMSO-ti6) δ 1.08 (d, J= 6.2 Hz, 3H), 1.15 (d, J= 6.1 Hz, 3H), 2.33 (dd, J= 10.8, 12.9 Hz, IH), 2.80 (t, J= 11.9 Hz, IH), 3.37-3.52 (m, IH), 3.52-3.68 (m, IH), 3.94 (d, J= 13.7 Hz, IH), 4.13 (d, J= 12.9 Hz, IH), 4.33 (s, 2H), 4.93 (d, J= 16.4 Hz, IH), 5.13 (d, J= 17.0 Hz, IH), 7.33 (dd, J= 1.8, 8.6 Hz, IH), 7.51 (d, J= 2.6 Hz, IH), 7.57-7.67 (m, 3H), 7.94 (s, IH), 10.80 (s, IH).
MS (ESI+) m/z 548 (M[35]+l), 550 (M[37]+l)
HPLC 96.0 % Example 42: Preparation of 6-Benzyloxy-5-oxo-l-(2-oxo-2-piperidin-l-yl-ethyI) - 1 ,5-dihydro-imidazo [1 ,2-a]py rimidine-7-carbothioic acid
Figure imgf000067_0001
Adapted from the procedure used to prepare Example 36.
MS (ESF) m/z 425 (M-I)
Example 43: Preparation of 2-Bromo-3-phenyl-propionaldehyde
Figure imgf000067_0002
Adapted from the procedure of example 38 using 3-Phenyl-propionaldehyde, which is commercially available
1H NMR (300 MHz, DMSO-/) δ 3.10 (dd, J= 8.8, 14.7 Hz, IH), 3.49 (dd, J= 6.3, 14.5 Hz, IH), 4.91-4.98 (m, Ih), 7.10-7.42 (m, 5H), 9.51 (d, J=2.3 Hz, IH).
Example 44: Preparation of 6-Benzyloxy-5-oxo-l-(2-oxo-2-piperidin-l-yl-ethyl)-l, 5-dihydro-imidazo [1, 2-a]py rimidine-7-carbothioic acid S-(l-formyl-2-phenyl- ethyl) ester
Figure imgf000067_0003
Adapted from the procedure of example 39 using the product of example 42 and the product of example of 43.
MS (ESI+) m/z 559 (M+l) Example 45: Preparation of 6-Benzyloxy-7-(5-benzyl-thiazol-2-yl)-l-(2-oxo-2- piperidin-l-yl-ethyl)-l H-imidazo [ 1 ,2-a] pyrimidin-5-one
Figure imgf000068_0001
Adapted from the procedure of example 40 using the product of example 44.
1H NMR (300 MHz, DMSO-d6) δ 1.38-1.50 (m, 2H), 1.55-1.66 (m, 4H), 3.37-3.45 (m, 2H), 3.46-3.56 (m, 2H), 4.25 (s, 2), 5.05 (s, 2), 5.08 (s, 2H), 7.24-7.38 (m, 8H), 7.47- 7.53 (m, 2H), 7.58 (d, J= 2.6 Hz, IH), 7.69 (d, J= 2.7 Hz, IH), 7.86 (t, J= 0.9 Hz, IH).
MS (ESI+) m/z 562 (M+23)
Example 46: Preparation of 7-(5-Benzyl-thiazol-2-yl)-6-hydroxy-l-(2-oxo-2- piperidin-l-yl-ethyl)-lH-imidazo[l,2-a]pyrimidin-5-one
Figure imgf000068_0002
Adapted from the procedure of example 8.5 of PCT/AU2007/001980 using the product of example 45.
1H NMR (300 MHz, DMSO-d6) δ 1.34-1.46 (m, 2H), 1.53-1.65 (m, 4H), 3.35-3.45 (m, 2H?), 3.46-3.55 (m, 2H), 4.29 (s, 2H), 4.98 (s, 2H), 7.18-7.38 (m, 5H), 7.52 (d, J= 2.6 Hz, IH), 7.61 (d, J= 2.6 Hz, IH), 7.91 (s, IH).
MS (ESI+) m/z All (M+23) Example 47: Preparation of methyl 2-(3-oxopropyl)benzoate
Figure imgf000069_0001
Adapted from the procedure of example 37 using 2-iodo-benzoic acid methyl ester
1H NMR (300 MHz, DMSO-/) δ 2.69-2.75 (m, 2H), 3.11 (t, J= 7.8 Hz, 2H), 3.80 (s, 3H), 7.28-7.36 (m, 2H), 7.48 (dd, J= 1.5, 7.5 Hz, IH), 7.79 (dd, J= 1.5, 7.8 Hz, IH), 9.69 (t, J= 1.5 Hz, IH).
MS (ESI+) m/z 233 (M+23), 265 (M+55)
Example 48: Preparation of methyl 2-(2-bromo-3-oxopropyl)benzoate
Figure imgf000069_0002
Adapted from the procedure of example 38 using the product of example 47.
1H NMR (300 MHz, CDCl3) δ 3.35 (dd, J= 7.8, 14.1 Hz, IH), 3.89 (s, 3H), 3.90 (dd, J= 6.3, 14.1 Hz, IH), 4.68-4.74 (m, IH), 7.31-7.38 (m, 2H), 7.45-7.51 (m, IH), 7.98-8.01 (m, IH). 9.51 (d, J= 2.4 Hz, IH).
Example 49: Preparation of 2-{2-[6-Benzyloxy-5-oxo-l-(2-oxo-2-piperidin -1-yl- ethyl)-l,5-dihydro-imidazo[l,2-a]pyrimidine-7-carbonylsulfanyl]-3-oxo-propyl}- benzoic acid methyl ester
Figure imgf000069_0003
Adapted from the procedure of example 39 using the product of example 48 and the product of example 42. MS (ESI+) m/z 639(M+23)
Example 50: preparation of 2-{2-[6-Benzyloxy-5-oxo-l-(2-oxo-2-piperidin -1-yl- ethyl)-l,5-dihydro-imidazo[l,2-a]pyrimidin-7-yl]-thiazoI-5-ylmethyl}-benzoic acid methyl ester
Figure imgf000070_0001
Adapted from the procedure of example 40 using the product of example 49.
1H NMR (300 MHz, CDCl3) δ 1.23-1.24 (m, 2H), 1.59-1.63 (m, 4H), 3.48-3.56 (m, 4H), 3.83 (s, 3H), 4.60 (s, 2H), 5.02 (s, 2H), 5.23 (s, 2H), 7.14 (d, J= 2.7 Hz, IH), 7.25- 7.35 (m, 5H), 7.43-7.50 (m, 3H), 7.60 (d, J= 2.4 Hz, IH), 7.73 (s, IH), 7.96 (d, J= 7.8, IH).
MS (ESI+) m/z 598 (M+l)
Example 51: preparation of 2-{2-[6-Hydroxy-5-oxo-l-(2-oxo-2-piperidin-l -yl- ethyl)-l,5- dihydro-imidazo[l,2-a]pyrimidin-7-yl]-thiazol-5-ylmethyl}-benzoic acid methyl ester
Figure imgf000070_0002
Adapted from the procedure of example 8.5 of PCT/AU2007/001980 using the product of example 50.
1H NMR (300 MHz, CDCl3) δ 1.39-1.40 (m, 2H), 1.59-1.60 (m, 4H), 3.39-3.50 (m, 4H), 3.84 (s, 3H), 4.58 (s, 2H), 4.96 (s, 2H), 7.50-7.59 (m, 5H), 7.86-7.89 (m, 2H), 10.80 (s, IH) MS (ESI+) m/z 508 (M+ 1)
HPLC 91.7 %
Example 52: Preparation of 5-Fluoro-2-iodo-benzoic acid
Figure imgf000071_0001
To a solution of 2-Amino-5-fluoro-benzoic acid (15.5g, 99.94mmol) in 6N HCl (300 ml) was added dropwise a solution OfNaNO2 (8.28 g, 119.93 mmol) in H2O (50 mL) at -50C. The mixture was stirred for 40 minutes, and then added to the mixture of KI (24.88 g, 149.91 mmol) and ice (200 g). After stirring for 1 hour at 50C, the mixture was extracted with H2O and dichloromethane, dried and concentrated to give the titled compound as a pale yellow solid (H g, yield 41%).
1H NMR (300 MHz, CDCl3) δ 7.17 (dt, J= 3.3, 8.7 Hz, IH), 7.54 (dd, J= 3.0, 9.3Hz, IH), 7.99 (dd, J= 5.4, 8.7 Hz, IH), 13.56 (s, IH).
MS (ESF) m/z 265 (M-I)
Example 53: Preparation of 5-Fluoro-2-iodo-benzoic acid methyl ester
Figure imgf000071_0002
A mixture of 5-fluoro-2-iodo-benzoic acid (10.05g, 39.47mmol) and cone. H2SO4 (1OmL) in MeOH (100ml) was reflux for 6 hours. After cooling to room temperature, NaOH (2N) was added dropwise to adjust the pH~8. After most of organic solvent was removed under reduced pressure, the mixture was extracted with dichloromethane three times. The combined organic layers were washed with water, dried and concentrated to give the titled compound (10.80 g, yield 98%)
1H NMR (300 MHz, DMSO-/) δ 3.83 (s, 3H), 7.19 (dt, J= 2.7, 8.4 Hz, IH), 7.56 (dd, J= 3, 9 Hz, IH), 8.00 (dd, J= 5.1, 9 Hz, IH).
MS (ESI+) m/z 303 (M+23), 335 (M+55) Example 54: Preparation of 5-Fluoro-2-(3-oxo-propyl)-benzoic acid methyl ester
Figure imgf000072_0001
Adapted from the procedure of example 37 using the product of example 53.
1H NMR (300 MHz, DMSO-rf6) δ 2.74 (t, J= 7.2 Hz, 2H), 3.10 (t, J= 7.2 Hz, 2H), 3.83 (s, 3H), 7.37-7.43 (m, 2H), 7.56 (dd, J= 2.7, 9.6 Hz, IH), 9.69 (s, IH).
MS (ESI+) m/z 233 (M+23), 265 (M+55)
Example 55: Preparation of 2-(2-Bromo-3-oxo-propyl)-5-fluoro-benzoic acid methyl ester
Figure imgf000072_0002
Adapted from the procedure of example 38 using the product of example 54.
1H NMR (300 MHz, DMSO-d6) δ 3.37-3.45 (dd, J= 8.4, 14.1 Hz, IH), 3.77-3.82 (m, IH), 3.84 (s, 3H), 4.85-4.91 (m, IH), 7.44-7.50 (m, 2H), 7.64 (dd, J= 2.7, 9.6 Hz, IH), 9.49 (d, J= 2.4 Hz, IH)
MS (ESI+) m/z 31 l(M[35]+23), 313 (M[37]+23)
Example 56: Preparation of 2-(2-{6-Benzyloxy-l-[2-(2,6-dimethyI-morpholin -4- yI)-2-oxo-ethyI]-5-oxo-l,5-dihydro-imidazo[l,2-a]pyrimidine-7-carbonylsulfanyl}- 3-oxo-propyI)-5-fluoro-benzoic acid methyl ester
Adapted from the procedure of example 39 using the product of example 55 and the product of example 36.
Figure imgf000073_0001
MS (ESI+) m/z 687 (M+23)
Example 57: Preparation of 2-(2-{6-Benzyloxy-l-[2-(2,6-dimethyl-morpholin -4- yl)-2-oxo-ethyl]-5-oxo-l,5-dihydro-imidazo[l,2-a]pyrimidin-7-yl}-thiazol-5- ylmethyl)-5-fluoro-benzoic acid methyl ester
Adapted from the procedure of example 40 using the product of example 56.
1H NMR (300 MHz, DMSO-/) δ 1.07 (d, J= 6.3 Hz, 3H), 1.13 (d, J= 6.0 Hz, 3H), 2.30 (t, J= 11.4 Hz, IH), 2.77 (t, J= 11.1 Hz, IH), 3.38-3.44 (m, IH), 3.54-3.58 (m, IH), 3.80 (s, 3H), 3.94 (d, J= 12.5 Hz, IH), 4.14 (d, J= 12.9 Hz, IH), 4.52 (s, 2H), 4.96 (d, J= 17.1 Hz, IH), 5.04 (s, 2H), 5.17 (d, J= 16.8 Hz, IH), 7.28-7.34 (m, 3H), 7.42- 7.48 (m, 3H), 7.51-7.56 (m, 2H),7.62 (dd, J= 2.7, 9.6 Hz, IH), 7.67-7.68 (m, IH), 7.79 (s, IH).'
MS (ESI+) /n/z 646(M+1) Example 58: preparation of 2-(2-{l-[2-(2,6-DimethyI-morpholin -4-yI)-2-oxo- ethyl]-6-hydroxy-5-oxo-l,5-dihydro-imidazo[l,2-a]pyrimidin-7-yl}-thiazol-5- ylmethyl)-5-fluoro-benzoic acid methyl ester
Figure imgf000074_0001
Adapted from the procedure of example 8.5 of PCT/AU2007/001980 using the product of example 57.
1H NMR (300 MHz, DMS(W5) δ 1.08 (d, J= 6.3 Hz, 3H), 1.15 (d, J= 6.0 Hz, 3H), 2.31 (t, J= 12.3 Hz, IH), 2.79 (t, J= 12.3 Hz, IH), 3.38-3.43 (m, IH), 3.54-3.60 (m, IH), 3.95 (d, J= 13.2 Hz, IH), 4.13 (d, J= 12.6 Hz, IH), 4.57 (s, 2H), 4.91 (d, J= 16.8 Hz, IH), 5.12 (d, J= 17.1 Hz, IH), 7.43-7.50 (m, 2H), 7.56-7.66 (m, 3H), 7.86 (s, IH), 10.8 (s, IH).
MS (ESI+) m/z 556 (M+l)
HPLC 98.2 %
Example 59: Preparation of 3-(3-ChIoro-4-fluoro-phenyl)-propionaldehyde
Figure imgf000074_0002
Adapted from the procedure of example 37 using 2-Chloro-l-fluoro-4-iodo-benzene.
1H NMR (300 MHz, DMSO-d6) δ 2.75-2.87 (m, 4H), 7.21-7.34 (m, 2H), 7.46 (dd, J= 2.1, 7.2 Hz, IH), 9.69 (s, IH). Example 60: Preparation of 2-Bromo-3-(3-chloro-4-fluoro-phenyl)- propionaldehyde
Figure imgf000075_0001
Adapted from the procedure of example 38 using the product of example 59.
1H NMR (300 MHz, DMSO-^6) 6 3.11 (dd, J= 8.7, 14.7 Hz, IH), 3.51 (dd, J= 6.0, 14.7 Hz, IH), 4.97-5.03(m, IH), 7.31-7.40 (m, 2H), 7.54 (dd, J= 1.8, 7.2 Hz, IH), 9.50 (d, J= 1.8 Hz, IH)
Example 61: Preparation of 6-Benzyloxy-l-[2-(2,6-dimethyl-morphoIin -4-yl)-2- OXO- ethyl]-5-oxo-l,5-dihydro-imidazo[l,2-a]pyrimidine-7-carbothioic acid S-[2-(3- chloro-4-fluoro-phenyI)-l-formyl-ethyl] ester
Figure imgf000075_0002
Adapted from the procedure of example 39 using the product of example 60.
The titled compound was used directly in the next step.
Example 62: Preparation of 6-Benzyloxy-7-[5-(3-chIoro-4-fluoro-benzyl)- thiazol-
2-yl]-l-[2-(2,6-dimethyl-morpholin-4-yl)-2-oxo-ethyI]-lH-imidazo[l,2- a] py rimidin-5-one
Figure imgf000076_0001
Adapted from the procedure of example 40 using the product of example 61.
1H NMR (300 MHz, DMSO-d6) δ 1.08 (d, J= 6.3 Hz, 3H), 1.14 (d, J= 6.3 Hz, 3H), 2.28-2.36 (m, IH), 2.76-2.85 (m, IH), 3.41-3.47 (m, IH), 3.57-3.63 (m, IH), 3.93 (d, J= 12 Hz5IH), 4.14 (d, J= 13.2 Hz, IH), 4.26 (s, 2H), 4.98 (d, J= 16.8 Hz5IH), 5.08 (s, 2H), 5.19 (d, J= 16.8 Hz, IH), 7.30-7.41 (m, 5H), 7.47-7.58 (m, 4H), 7.70 (d, J= 2.7 Hz, IH), 7.87 (s, IH).
MS (ESI") m/z 620 (M-I )
Example 63: Preparation of 7-[5-(3-Chloro-4-fluoro-benzyl)-thiazol-2-yl]-l-[2-
(2,6-dimethyl-morpholin-4-yl)-2-oxo-ethyl]-6-hydroxy-lH-imidazo[l,2- a] py rimidin-5-one
Figure imgf000076_0002
Adapted from the procedure of example 8.5 of PCT/AU2007/001980 using the product of example 62.
1H NMR (300 MHz, DMSO-/) δ 1.08 (d, J= 6.3 Hz, 3H)5 1.14 (d, J= 5.9 Hz, 3H), 2.27-2.36 m, IH)5 2.76-2.84 (m, IH), 3.39-3.43 (m, IH)5 3.56-3.60 (m, IH), 3.94 (d, J= 12.6 Hz5IH), 4.13 (d, J= 13.2 Hz, IH), 4.31 (s, 2H), 4.93 (d, J= 16.8 Hz5IH), 5.13 (d, J= 17.1 Hz, IH), 7.34-7.42 (m, 2H), 7.51 (d, J= 2.4 Hz, IH), 7.58 (dd, J= 2.1, 7.8 Hz, IH), 7.62 (d, J= 2.7 Hz, IH ), 7.93 (s, IH).
MS (ESI+) m/z 532 (M+l )
HPLC 95.9 %
Example 64: Preparation of 6-Acetoxy-3-bromo-5-oxo-l,5-dihydro-imidazo[l,2-a] pyrimidine-7-carboxylic acid methyl ester
Figure imgf000077_0001
To a stirred of 6-Methyl-5-oxo-l,5-dihydro-imidazo[l,2-a]pyrimidine-7-carboxylic acid methyl ester (Ig , 3.98 mmol) in DMF (6 ml) was added NBS (0.78g, 4.38mol) at room temperature. After stirring at room temperature overnight, the mixture was poured into water (30 ml) and the solids were collected by filtration, washed with water and cold methanol successively, and dried in vacuo to afford the desired product (0.67 g, yield 51.1 %).
1H NMR (SOO MHZ, DMSO-d6) δ 2.24 (s, 3H), 3.82 (s, 3H), 7.86 (s, IH), 13.34-13.60 (brs, IH)
MS (ESI+) m/z 330 (M[79]+l), 332 (M[81]+l)
Example 65: Preparation of l-(2, 6-Dimethyl-morpholin-4-yI)-2-iodo-ethanone
Figure imgf000077_0002
A mixture of the product of example 32 (800 mg, 4.2 mmol) and KI (1.4 g, 8.4 mmol) in acetone (50 ml) was stirred at room temperature for 6 hours. Then the solids were removed by filtration and the filtrate was concentrated under reduced pressure. The residue was suspended in EA and the solids were removed by filtration. The filtrate was concentrated in vacuo to give the iodide (955 mg, yield 80.6 %), which was used directly in the next step.
Example 66: Preparation of 6-Acetoxy-3-bromo-l-[2-(2,6-dimethyl-morpholin -4- yl)-2-oxo-ethyl]-5-oxo-l,5-dihydro-imidazo[l,2-a]pyrimidine-7-carboxylic acid methyl ester
Figure imgf000078_0001
Adapted from the procedure of example 33 using the product of example 64 and the product of example 65.
1H NMR (300 MHz, CDCl3) δ 1.23 (dd, J= 6.2, 13.2 Hz, 6H), 2.34 (s, 3H), 2.42 (t, J= 12.2 Hz, IH), 2.95 (t, J= 10.6 Hz, IH), 3.46-3.76 (m, 3H), 3.91 (s, 3H), 4.35 (d, J= 12.7 Hz, IH), 4.84 (d, J= 14.2 Hz, IH), 5.02 (d, J= 14.0 Hz, IH), 7.15 (s, IH).
MS (ESI+) m/z 485 (M[79]+l), 487 (M[81]+l)
Example 67: Preparation of 6-Benzyloxy-3-bromo-l-[2-(2,6-dimethyl-morpholin- ^y^^-oxo-ethylj-S-oxo-ljS-dihydro-imidazoll^-alpyrimidine^-carboxylic acid methyl ester
Figure imgf000078_0002
Adapted from the procedure of example 34 using the product of example 66.
1H NMR (300 MHz, CDCl3) δ 1.15-1.29 (m, 6H), 2.40 (dd, J= 11.5, 12.9 Hz, IH), 2.91 (dd, JE= 11.0, 12.8 Hz, IH), 3.45-3.72 (m, 3H), 3.85 (s, 3H), 4.34 (d, J= 13.1 Hz, IH), 4.77 (d, J= 16 Hz, IH), 4.98 (d, J= 16.1 Hz, IH), 5.14 (s, 2H), 7.11 (s, IH), 7.28-7.42 (m, 3H), 7.44-7.55 (m,2H).
MS (ESI+) m/z 533 (M[79]+l), 535 (M[81]+l)
Example 68: Preparation of 6-Benzyloxy-l-[2-(2,6-dimethyl-morphoIin-4-yl)-2 - oxo-ethy I] -3-(l , 1 -dioxo- 116-isothiazolidin-2-yl)-5-oxo- 1 ,5-dihy dro-imidazo [ 1 ,2- a]pyrimidine-7-carboxylic acid methyl ester
Figure imgf000079_0001
The product of example 67 (460 mg, 8.6 mmol), sulfonamide (210 mg, 1.73 mmol), K2CO3 (240 mg, 1.73 mmol), CuI (30 mg, 0.17 mmol) and DMEDA (30 mg, 0.34 mmol) were mixed in toluene (10 ml) and heated at 90 0C for 3 hours. After being cooled to room temperature, the mixture was filtered, washed with DCM. The filtrate was concentrated into dryness, and the residue was purified by column chromatography using DCM/EA (5/2) as eluent to give the title compound (129 mg, 26.0 % yield).
1H NMR (300 MHz, DMSO-/) δ 1.12 (q, J= 6.2 Hz, 6H), 2.34 (dd, J= 10.5, 12.4 Hz, IH), 2.41-2.50 (m, 2H?), 2.78 (dd, J= 10.6, 13.0 Hz, IH), 3.41-3.53 (m, 3H), 3.55-3.67 (m, IH), 3.77 (s, 3H), 3.78 -3.91 (m, 3H), 4.14 (d, J= 12.9 Hz, IH), 4.95 (d, J= 17.2 Hz, IH), 5.02 (s, 2H), 5.19 (d, J= 16.8 Hz, IH), 7.29-7.44 (m, 5H), 7.70 (s, IH).
MS (ESI+) m/z 51 A (M+l) Example 69: Preparation of 6-Benzyloxy-l-[2-(2,6-dimethyl-morpholin-4-yl)- 2- oxo-ethyl]-3-(l,l-dioxo-116-isothiazolidin-2-yl)-5-oxo-l,5-dihydro-imidazo[l,2- a]pyrimidine-7-carboxylic acid
Figure imgf000080_0001
Adapted from the procedure of example 35 using the product of example 68.
1H NMR (300 MHz, DMSO-d6) δ 1.09 (d, J= 6.2 Hz, 3H), 1.14 (d, J= 5.8 Hz, 3H), 2.28-2.39 (m, IH), 2.42-2.50 (m, 2H), 2.74-2.86 (m, IH), 3.42-3.54 (m, 3H), 3.56-3.64 (m, IH), 3.77-3.92 (m, 3H), 4.10-4.20 (m, IH), 4.92-5.04 (m, 3H), 5.20 (d, J= 16.8 Hz, IH), 7.31-7.42 (m, 3H), 7.43-7.48 (m, 2H), 7.69 (s, IH), 13.54-13.75 (brs, IH)
MS (ESI+) m/z 560 (M+l)
Example 70: Preparation of 6-Benzyloxy-l-[2-(2, 6-dimettayl-morpholin-4-yl) -2- oxo-ethyl]-3-(l,l-dioxo-116-isothiazolidin-2-yl)-5-oxo-l,5-dihydro-imidazo[l,2- a]pyrimidine-7-carbothioic acid
Figure imgf000080_0002
Adapted from the procedure of example 36 using the product of example 69.
MS (ESI") m/z 574 (M-I) Example 71: Preparation of 3-(4-FIuoro-phenyl)-propionaldehyde
Figure imgf000081_0001
Adapted from the procedure of example 37 using l-fluoro-4-iodo-benzene.
1H NMR (300 MHz, DMSO-d6) δ 2.71-2.89 (m, 4H), 7.09 (t, J= 9.0 Hz, 2H), 7.26 (dd, J= 5.6, 8.8 Hz, 2H), 9.70 (t, J= 1.3 Hz, IH)
Example 72: Preparation of 3-Bromo-3-(4-fluoro-phenyl)-propionaldehyde
Figure imgf000081_0002
Adapted from the procedure of example 38 using the product of example 71.
1H NMR (300 MHz, DMSO-/) δ 3.10 (dd, J= 8.5, 14.7 Hz, IH), 3.47 (dd, J= 6.2, 14.6 Hz, IH), 4.90-4.98 (m, IH), 7.15 (t, J= 8.9 Hz, 2H), 7.33 (dd, J= 5.6, 8.5 Hz, 2H), 9.50 (d, J= 2.0 Hz, IH)
Example 73: Preparation of 6-Benzyloxy-l-[2-(2,6-dimethyl-morpholin-4-yl)-2- oxo-ethyl] -3-(l ,1-dioxo- 116-isothiazolidin-2-yl)-5-oxo-l ,5-dihydro-imidazo [ 1 ,2- a]pyrimidine-7-carbothioic acid S-[l-(4-fluoro-benzyl)-2-oxo-ethyl] ester
Figure imgf000081_0003
Adapted from the procedure of example 39 using the product of example 70 and the product of example 72.
MS (ESI+) m/z 748 (M+23) Example 74: Preparation of 6-Benzyloxy-l-[2-(2,6-dimethyl-morpholin-4-yl) -2- oxo-ethyl]-3-(l,l-dioxo-116-isothiazoIidin-2-yl)-7-[5-(4-fluoro-benzyl)-thiazol-2-yl]- lH-imidazo[l,2-a]pyrimidin-5-one
Figure imgf000082_0001
Adapted from the procedure of example 40 using the product of 73.
1H NMR (300 MHz5CDCl3) δ 1.22 (dd, J= 6.2, 14.3 Hz, 6H), 2.31-2.48 (m, IH), 2.51- 2.69 (m, 2H), 2.86-2.99 (m, IH), 3.38-3.60 (m, 3H), 3.60-3.90 (m, 2H), 3.90-4.06 (m, 2H), 4.15 (s, 2H), 4.34 (d, J= 13.5 Hz, IH), 4.88 (d, J= 15.6 Hz, IH), 5.12-5.33 (m, 3H), 7.02 (t, J= 8.5 Hz, 2 H), 7.11-7.21 (m, 2H), 7.20-7.30 (m, 4H?), 7.36-7.45 (m, 2H), 7.74 (s, IH).
MS (ESI") m/z 705 (M-I)
Example 75: Preparation of l-[2-(2,6-Dimethyl-morpholin-4-yl)-2-oxo- ethyl]-3-
(l,l-dioxo-116-isothiazoIidin-2-yl)-7-[5-(4-fluoro-benzyl)-thiazol-2-yl]-6-hydroxy- lH-imidazo[l,2-a]pyrimidin-5-one
Figure imgf000082_0002
Adapted from the procedure of example 8.5 of PCT/AU2007/001980 using the product of example 74. 1H NMR (300 MHz, DMSO-d6) δ 1.08 (d, J= 6.3 Hz, 3H), 1.15 (d, J= 6.2 Hz, 3H), 2.24-2.38 (m, IH), 2.39-2.50 (m, 2H), 2.82 (dd, J- 10.4, 13.2 Hz, IH), 3.35-3.50 (m, 3H), 3.51-3.65 (m, IH), 3.80 (t, J= 6.4 Hz, 2H), 3.94 (d, J= 12.9 Hz, IH), 4.14 (d, J= 12.5 Hz, IH), 4.29 (s, 2H), 4.88 (d, J= 17.1 Hz, IH), 5.08 (d, J= 16.9 Hz, IH), 7.16 (t, J= 8.8 Hz, 2H), 7.36 (dd, J= 5.4, 8.3 Hz, 2H), 7.62 (s, IH), 7.90 (s, IH), 10.76 (s, IH)
MS (ESI+) m/z 639 (M+23)
HPLC 97.6 %
Example 76: Preparation of 2-(2-{5-Benzyloxy-l-[2-(2,6-dimethyl-morpholin- 4- yl)-2-oxo-ethyI]-4-oxo-3a,4-dihydro-lH-indol-6-yl}-thiazol-5-yImethyl)-5-fluoro- benzoic acid
Figure imgf000083_0001
The product of example 58 (1.1 g, 1.70 mmol) was dissolved in DMF (10 ml) and then LiOH-H2O (143 mg, 3.41 mmol) was added. The mixture was stirred for 3hours at room temperature. The reaction mixture was directly poured into IN HCl (20 ml), The resulting solids were collected by filtration and recrystallized from MeOH to give titled compound (740 mg, yield 69%)
1H NMR (300 MHz, DMSO-/) δ 1.07 (d, J= 6.3 Hz, 3H), 1.13 (d, J= 6.0 Hz, 3H), 2.30 (t, J= 11.4 Hz, IH), 2.77 (t, J= 10.8 Hz, IH), 3.38-3.44 (m, IH), 3.54-3.59 (m, IH), 3.91 (d, J= 12.3 Hz, IH), 4.11 (d, J= 12.6 Hz, IH), 4.57 (s, 2H), 4.95 (d, J= 16.8 Hz, IH), 5.04 (s, 2H), 5.16 (d, J= 17.1 Hz, IH), 7.29-7.33 (m, 3H), 7.40-7.51 (m, 4H), 7.55 (d, J= 2.7 Hz, IH), 7.62 (dd, J= 2.4, 9.6 Hz, IH), 7.67 (d, J= 2.7 Hz, IH), 7.75 (s, IH), 13.3 (s, IH).
MS (ESI+) m/z 632(M+1), 654(M+23) Example 77: Preparation of 2-(2-{6-Benzyloxy-l-[2-(2,6-dimethyl-morpholin -4- yl)-2-oxo-ethyl]-5-oxo-l,5-dihydro-imidazo[l,2-a]pyrimidin-7-yl}-thiazoI-5- ylmethyl)-5-fluoro-N,N-dimethyl-benzamide
Figure imgf000084_0001
To a solution of the product of 76 ( 120 mg, 0.19 mmol) in dichloromethane ( 15 ml), EDCI.HC1 (44 mg, 0.23 mmol), HOBt(31 mg, 0.23 mmol), NMe2NRHCl (31 mg, 0.38 mmol) and TEA (58 mg, 0.57 mmol) was added successively. The mixture was stirred at room temperature overnight, after which it was poured into water and extracted with DCM. The combined organic layers were washed with water, dried and concentrated. The residue was purified by column chromatography to give the titled product (62 mg, yield 50%).
1H NMR (300 MHz, DMSO-d6) δ 1.08 (d, J= 6.3 Hz, 3H), 1.15 (d, J= 6.3 Hz, 3H), 2.28-2.37 (m, IH), 2.52 (s, 3H), 2.77-2.85 (m, IH), 2.91 (s, 3H), 3.43-3.45 (m, IH), 3.60-3.62 (m, IH), 3.94 (d, J= 12.3 Hz, IH), 4.10-4.14 (m, IH), 4.17 (s, 2H), 5.0 (d, J= 16.5 Hz, IH), 5.06 (s, 2H), 5.17 (d, J= 16.8 Hz, IH), 7.14 (dd, J= 3, 8.7 Hz, IH), 7.23- 7.28 (m, IH), 7.31-7.37 (m, 3H), 7.41-7.46 (m, IH), 7.47-7.50 (m, 2H), 7.57 (d, J= 2.9 Hz, IH), 7.70 (d, , J= 2.7 Hz, IH), 7.74 (s, IH).
MS (ESI+) m/z 68 l(M+23)
Example 78: preparation of 2-(2-{l-[2-(2,6-Dimethyl-morphoIin-4-yl) -2-oxo- ethyl]-6-hydroxy-5-oxo-l,5-dihydro-imidazo[l,2-a]pyrimidin-7-yl}-thiazol-5- ylmethyl)-5-fluoro-N,N-dimethyl-benzamide
Figure imgf000085_0001
Adapted from the procedure of example 8.5 of PCT/AU2007/001980 using the product of example 77.
1H NMR (300 MHz, DMSO-d6) δ 1.05 (d, J= 6.3 Hz, 3H), 1.12 (d, J= 6.0 Hz, 3H), 2.25-2.34 (m, IH), 2.58 (s, 3H), 2.74-2.85 (m, IH), 2.93 (s, 3H), 3.39-3.42 (m, IH), 3.56-3.59 (m, IH), 3.92 (d, J= 12.6 Hz, IH), 4.10 (d, J= 12.6 Hz, IH), 4.17 (s, 2H), 4.90 (d, J= 16.5 Hz, IH), 5.13 (d, J= 16.8 Hz, IH), 7.15 (dd, J= 2.7, 9.0 Hz, IH), 7.19- 7.26 (m, IH), 7.42-7.47 (m, IH), 7.49 (d, J= 2.7 Hz, IH), 7.60 (d, , J= 2.7 Hz IH), 7.79 (s, IH), 10.8 (s, lH).
MS (ESI+) m/z 569(M+1), 591(M+23)
Example 79: Preparation of 6-Benzyloxy-l-[2-(2,6-dimethyl-morpholin-4-yl) -2- oxo-ethyl]-3-(l,l-dioxo-116-isothiazolidin-2-yl)-5-oxo-l,5-dihydro-imidazo[l,2- a]pyrimidine-7-carbothioic acid S-[l-(3,4-dichloro-benzyl)-2-oxo-ethyl] ester
Figure imgf000085_0002
Adapted from the procedure of example 39 using the product of example 70and the product of example 38. MS (ESI+) m/z 776 (M[35]+l), 778 (M[37]+l)
Example 80: Preparation of 6-Benzyloxy-7-[5-(3,4-dichloro-benzyl)-thiazoI- 2-yl]- l-P-Cl^-dimethyl-morpholin^-y^^-oxo-ethylJ-S-Cljl-dioxo-llό-isothiazolidin-l- y I)- 1 H-imidazo [ 1,2-a] py rimidin-5-one
Figure imgf000086_0001
Adapted from the procedure of example 40 using the product of example 79.
1H NMR (300 MHz, CDCl3) δ 1.18-1.34 (m, 6H), 2.43 (t, J= 11.5 Hz, IH), 2.62 (t, J= 7.0 Hz, 2H), 2.85-3.05 (m, IH), 3.41-3.88 (m, 5H), 3.92-4.06 (m, 2H), 4.15 (s, 2H), 4.36 (d, J= 12.3 Hz, IH), 4.80-5.00 (m, IH), 5.01-5.40 (m, 3H), 7.05 (d, J= 7.6 Hz, IH), 7.20-7.35 (m, 5H), 7.38-7.50 (m, 3H), 7.76 (s, IH)
MS (ESI") m/z 755 (M[35]-l), 757 (M[37]-l)
Example 81: Preparation of 7-[5-(3,4-Dichloro-benzyl)-thiazoI-2-yl]-l- [2-(2,6- dimethyl-morpholin-4-yl)-2-oxo-ethyl]-3-(l,l-dioxo-116-isothiazolidin-2-yl)-6- hydroxy-lH-iniidazo[l,2-a]pyrimidin-5-one
Figure imgf000086_0002
Adapted from the procedure of example 8.5 of PCT/AU2007/001980 using the product of example 80. 1H NMR (300 MHz, DMSO-d6) δ 1.08 (d, J= 6.3 Hz, 3H), 1.15 (d, J= 6.2 Hz, 3H), 2.32 (dd, J= 11.4, 13.6 Hz, IH), 2.38-2.50 (m, 2H), 2.70-2.85 (m, IH), 3.38-3.50 (m, 3H), 3.51-3.68 (m, IH), 3.80 (t, J= 6.8 Hz, 2H), 3.94 (d, J= 12.3 Hz, IH), 4.13 (d, J= 12.1 Hz, IH), 4.32 (s, 2H), 4.89 (d, J= 16.9 Hz, IH), 5.10 (d, J= 16.5 Hz, IH), 7.33 (dd, J= 2.3, 8.4 Hz, IH), 7.58-7.66 (m, 3H), 7.93 (s, IH), 10.75 (s, IH)
MS (ESI+) m/z 689 (M[35]+23), 691 (Mt37]+23)
HPLC 98.7 %
Example 82: Preparation of 5-Fluoro-2-methoxy-benzenesuIfonyl chloride
Figure imgf000087_0001
l-fluoro-4-methoxybenzene (10.0 g, 0.079mol) was added dropwise to sulfurochloridic acid (31.4ml, 0.474mol) at 00C, The mixture was stirred at room temperature for about 6h, after which it was added dropwise into ice water. The mixture was extracted with CH2Cl2 three times. The combined extracts were washed with brine, dried over sodium sulfate and concentrated in vacuo to give the title product (15.Og, 84.6%yield).
1H NMR (300 MHz, DMSO-d6) δ 3.74 (s, 3H), 6.97 (dd, J= 4.3, 8.9 Hz, IH), 7.13 (dt, J= 3.4, 8.6 Hz, IH), 7.41 (dd, J= 3.3, 8.8 Hz, IH)
Example 83: Preparation of 4-(5-FIuoro-2-methoxy-benzenesulfonyl)-morpholine
Figure imgf000087_0002
To a mixture of morpholine(5.8g, 66.9 mmol) and TEA (9.3ml, 66.9mol) in CH2Cl2 (20 ml) was added dropwise a solution of the product of example 82 (5.0g, 22 mmol) in CH2Cl2 (10 ml) at 0°C. After stirring at room temperature for one hour, the mixture was diluted with CH2Cl2, washed with water, dried and concentrated under reduced pressure. The resulting residue was purified by column chromatography (PE/EA=10/l) to give the titled compound (5.53 g, yield 90.3%).
1H NMR (300 MHz, DMSO-d6) δ 3.10 (t, J= 4.6 Hz, 4H), 3.59 (t, J= 4.6 Hz, 4H), 3.89 (s, 3H), 7.31 (dd, J= 4.4, 9.1 Hz, IH), 7.46-7.59 (m, 2H).
MS (ESI+) m/z 298 (M+23)
Example 84: Preparation of 4-FIuoro-2-(morpholine-4-sulfonyl)-phenol
Figure imgf000088_0001
To a solution of 4-(5-fluoro-2-methoxyphenylsulfonyl)morpholine (0.5g 1.8mmol) in CH2Cl2 (10 ml) was added dropwise a solution of tribromoborane (0.593mg 2.36mmol) in CH2Cl2 (20 ml) at O0C. The mixture was stirred at room temperature for Ih, after which methanol (10ml) was added to quench the reaction. The solvent was evaporated under reduced pressure and ethyl acetate (30 ml) was added , washed with water and then brine, dried and concentrated into dryness to give the product (427mg, 90%yield).
1H NMR (300 MHz, DMSO-d6) δ 3.11 (t, J= 4.7 Hz, 4H), 3.59 (t, J= 4.7 Hz, 4H), 7.01- 7.09 (m, IH), 7.33-7.42 (m, 2H), 10.72 (s, IH)
Example 85: Preparation of Trifluoro-methanesulfonic acid 4-fluoro-2- (morpholine-4-sulfonyl)-phenyl ester
Figure imgf000088_0002
To a solution of 4-fluoro-2-(morpholinosulfonyl)phenol (0.4g, 1.5mmol) and DMAP (0.28g 2.29mmol) in CH2Cl2(IOmI), Tf2O (0.93ml 5.5mmol) was added dropwise at 0°C. The mixture was stirred at room temperature for 4h, after which the mixture was washed with hydrochloric acid (IN, 20ml) and then extracted with EA. The extracts were combined, washed with brine, dried over sodium sulfate and evaporated into dryness. The resulting residue was purified by column chromatography using PE/EA (10/1) as eluent to give the desired product (469mg, yield 78%).
1H NMR (300 MHz, DMSO-d6) δ 3.09 (t, J= 4.7 Hz, 4H), 3.64 (t, J= 4.7 Hz, 4H), 7.70- 7.86 (m, 3H)
Example 86: Preparation of 3-[4-Fluoro-2-(morpholine-4-suIfonyl)-phenyl] - acrylic acid methyl ester
Figure imgf000089_0001
To a solution of the product of example 85 (lOOmg 0.254mmol) in dry DMF (3 ml) was added methyl acrylate (0.09ml, 1.02mmol), Pd(PPh3)2Cl2(17.83mg, 0.0254mmol), DPPP (10.5mg, 0.0254mmol) and DIPEA (0.2ml, 1.02mmol) successively at room temperature in sealed tube. The mixture was heated at 120°C for about 24 h. After cooling to room temperature, the mixture was poured into ice water and extracted with EA three times. The combined extracts were washed with brine, dried over sodium sulfate and concentrated under reduced pressure. The residue was purified by column chromatography (PE/EA=5/1) to give the desire product (36mg, yield 43%).
1H NMR (300 MHz, DMSO-d6) δ 3.03 (t, J= 4.7 Hz, 4H), 3.59 (t, J- 4.7 Hz, 4H), 3.75 (s, 3H), 6.65 (d, J= 16.1 Hz, IH), 7.60-7.75 (m, 2H), 8.12 (dd, J= 5.1, 8.4 Hz, IH), 8.33 (d, J= 15.7 Hz, IH).
MS (ESI+) m/z 352 (M+23) Example 87: Preparation of 3-[4-Fluoro-2-(morpholine-4-sulfonyl)-phenyI]- propionic acid methyl ester
Figure imgf000090_0001
To a solution of the product of example 86 (200mg, 0.608mmol) in MeOH (10ml) was added Pd/C (20mg, 10 % Pd on carbon). The mixture was stirred at room temperature under H2 atmosphere overnight. The mixture was filtered and the filtrate was concentrated in vacuo. The resulting residue was purified by column chromatography (PE/EA=3/1) to give the desire product (150mg, yield 74.5%).
1H NMR (300 MHz, DMSO-d6) δ 2.65 (t, J= 8.0 Hz, 2H), 3.05 (t, J= 4.7 Hz, 4H), 3.18 (t, J= 8.0 Hz, 2H), 3.56-3.66 (m, 7H), 7.48-7.64 (m, 3H).
Example 88: Preparation of 3-[4-Fluoro-2-(morpholine-4-sulfonyl)-phenyl] - propionaldehyde
Figure imgf000090_0002
The solution of the product of example 87 (830 mg, 2.5 mmol) in toluene (5 ml) was cooled down to -70 0C. DIBAL-H (lmol/1 in toluene, 3.12 ml) was added dropwise. After completion of addition, the mixture was stirred at -7O0C for one hour. Then the reaction was quenched by adding MeOH (2 ml), after which it was warmed to room temperature. The mixture was dissolved in EA, washed with brine, dried and evaporated under reduced pressure. The residue was purified by column chromatography (PE: EA=3: 2) to afford the title compound (355 mg, 47 % yield). 1H NMR (300 MHz, DMSO-d6) δ 2.81 (dt, J= 0.9, 7.6 Hz, 2H), 3.06 (t, J= 4.7 Hz, 4H), 3.17 (t, J- 7.7 Hz, 2H), 3.63 (t, J= 4.7 Hz, 4H), 7.46-7.64 (m, 3H), 9.71 (t, J= 1.0 Hz, IH)
Example 89: Preparation of 3-Bromo-3-[4-fluoro-2-(morpholine-4-sulfonyl) - phenyl] -propionaldehyde
Figure imgf000091_0001
Adapted from the procedure of example 38 using the product of example 88
1H NMR (300 MHz, DMSO-d6) δ 3.06 (t, J= 4.7 Hz, 4H), 3.47 (dd, J= 8.9, 15.0 Hz, IH), 3.65 (t, J= 4.7 Hz, 4H), 3.80 (dd, J= 6.2, 15.2 Hz, IH), 4.92-5.03 (m, IH), 7.54- 7.75 (m, 3H), 9.52 (d, J= 1.8 Hz, IH)
Example 90: Preparation of 6-Benzyloxy-l-[2-(2,6-dimethyl-morpholin-4-yl) -2- oxo-ethyl]-5-oxo-l,5-dihydro-imidazo[l,2-a]pyrimidine-7-carbothioic acid S- {1- [4-fluoro-2-(morpholine-4-sulfonyl)-benzyl] -2-oxo-ethyl} ester
Figure imgf000091_0002
Adapted from the procedure of example 39 using the product of example 89.
MS (ESI+) m/z 778 (M+23) Example 91: Preparation of 6-Benzyloxy-l-[2-(2,6-dimethyl-morpholin-4-yl) -2- oxo-ethyl]-7-{5-[4-fluoro-2-(morpholine-4-suIfonyl)-benzyl]-thiazol-2-yl}-lH- imidazo[l,2-a]pyrimidin-5-one
Figure imgf000092_0001
Adapted from the procedure of example 40 using the product of example 90.
1H NMR (300 MHz, DMSO-d6) δ 1.07 (d, J= 5.8 Hz, 3H), 1.14 (d, J= 6.0 Hz, 3H), 2.31 (t, J= 11.6 Hz, IH), 2.80 (t, J= 11.8 Hz, IH), 2.99-3.09 (m, 4H), 3.37-3.49 (m, IH), 3.51-3.68 (m, 5H), 3.94 (d, J= 12.8 Hz, IH), 4.14 (d, J= 12.8 Hz, IH), 4.61 (s, 2H), 4.92-5.09 (m, 3H), 5.20 (d, J= 16.6 Hz, IH), 7.27 -7.36 (m, 3H), 7.44-7.53 (m, 2H), 7.54-7.69 (m, 4H), 7.71 (d, J= 2.4 Hz, IH), 7.86 (s, IH)
MS (ESI+) m/z 759 (M+23)
Example 92: Preparation of l-[2-(2,6-Dimethyl-morpholin-4-yI)-2-oxo- ethyl]-7-{5- [4-fluoro-2-(morpholine-4-sulfonyI)-benzyl]-thiazol-2-yl}-6-hydroxy-lH- imidazo [1 ,2-a] py rimidin-5-one
Figure imgf000092_0002
Adapted from the procedure of example 8.5 of PCT/AU2007/001980 using the product of example 91. 1H NMR (300 MHz, DMSO-d6) δ 1.07 (d, J= 6.2 Hz, 3H), 1.14 (d, J= 5.9 Hz, 3H), 2.31 (dd, J= 10.8, 12.7 Hz, IH), 2.80 (t, J= 11.8 Hz, IH), 3.08 (t, J= 4.5 Hz, 4H), 3.35- 3.48 (m, IH), 3.50-3.68 (m, 5H), 3.95 (d, J= 11.9 Hz, IH), 4.13 (d, J= 11.3 Hz, IH), 4.63 (s, 2H), 4.92 (d, J= 16.1 Hz, IH), 5.12 (d, J= 15.4 Hz, IH), 7.46 -7.75 (m, 5H), 7.91 (s, IH), 10.81 (s, IH)
MS (ESI+) m/z 669 (M+23)
HPLC 98.2 %
Example 93: Preparation of 6-Benzyloxy-l-[2-(2,6-dimethyl-morpholin -4-yl)-2- oxo-ethyl]-7-{5-[4-fluoro-2-(morpholine-4-carbonyl)-benzyl]-thiazol-2-yl}-lH- imidazo[l,2-a]pyrimidin-5-one
Figure imgf000093_0001
Adapted from the procedure of example 77 using morpholine.
1H NMR (300 MHz, DMSO-/) δ 1.07 (J= 6.3 Hz, 3H), 1.13 (J= 6.0 Hz, 3H), 2.30 (t, J= 12.6 Hz, IH), 2.6-2.83 (m, 2H), 2.96-3.05 (m, 2H), 3.38-3.60 (m, 7H), 3.91 (d, J= 12.3 Hz, IH), 4.09-4.13 (m, 2H), 4.29-4.33 (m, IH), 4.96 (d, J= 16.8 Hz, IH), 5.04 (s, 2H), 5.17 (d, J= 16.8 Hz, IH), 7.16-7.33 (m, 5H), 7.43-7.48 (m, 3H), 7.56 (d, J= 2.7 Hz, IH), 7.69 (d, J= 2.7 Hz, IH), 7.74 (s, IH).
MS (ESI") m/z 699 (M-I) Example 94: Preparation of l-[2-(2,6-Dimethyl-morpholin-4-yl)-2-oxo- ethyl]-7-{5- [4-fluoro-2-(morphoIine-4-carbonyl)-benzyl]-thiazol-2-yl}-6-hydroxy-lH- imidazo [1 ,2-a] pyrimidin-5-one
Figure imgf000094_0001
Adapted from the procedure of example 8.5 of PCT/AU2007/001980 using the product of example 93.
1H NMR (300 MHz, DMSO-d6) δ 1.06 (J= 6.0 Hz, 3H), 1.13 (J= 6.0 Hz, 3H), 2.30 (t, J= 12.9 Hz, IH), 2.74-2.84 (m, 2H), 3.09-3.16 (m, 2H), 3.38-3.63 (m, 7H), 3.91 (d, J= 13.2 Hz, IH), 4.06-4.15 (m, 2H), 4.27-4.35 (m, IH), , 4.90 (d, J= 16.5 Hz, IH), 5.10 (d, J= 16.8 Hz, IH), 7.18-7.27 (m, 2H), 7.45-7.50 (m, 2H), 7.60 (d, J= 2.7 Hz, IH), 7.80 (s, IH), 10.78 (s, IH).
MS (ESI') m/z 609 (M-I)
HPLC 99.8 %
Example 95: Preparation of 5-Fluoro-2-methoxy-N,N-dimethyl- benzenesulfonamide
Figure imgf000094_0002
Adapted from the procedure of example 83 using hydrochlorate of dimethylamine.
1H NMR (300 MHz, DMSO-/) δ 2.74 (s, 6H), 3.88 (s, 3H), 7.25-7.34 (m, IH), 7.47- 7.56 (m, 2H) Example 96: Preparation of 5-Fluoro-2-hydroxy-N,N-dimethyl-benzene sulfonamide
Figure imgf000095_0001
Adapted from the procedure of example 84 using the product of example 95.
1H NMR (300 MHz5CDCl3) δ 2.80 (s, 6H), 7.0-7.10 (m, IH), 7.18-7.30 (m, 2H), 8.66 (s, IH).
MS (ESI") m/z 218 (M-I)
Example 97: Preparation of Trifluoro-methanesulfonic acid 2-dimethylsulfamoyl 4-fIuoro-phenyl ester
Figure imgf000095_0002
Adapted from the procedure of example 85 using the product of example 96.
1H NMR (300 MHz, DMSO-/) δ 2.77 (s, 6H), 7.68-7.85 (m, 3H)
MS (ESI+) m/z 374 (M+23)
Example 98: Preparation of 3-(2-Dimethylsulfamoyl-4-fluoro-phenyl)-acrylic acid methyl ester
Figure imgf000095_0003
Adapted from the procedure of example 86 using the product of example 97. 1H NMR (300 MHz, CDCl3) δ 2.81 (s, 6H), 3.83 (s, 3H), 6.30 (d, J= 16.1 Hz, IH), 7.30-7.45 (m, IH), 7.65-7.79 (m, 2H), 8.48 (d, J= 15.7 Hz, IH).
MS (ESI+) m/z 288 (M+l)
Example 99: Preparation of 3-(2-Dimethylsulfamoyl-4-fluoro-phenyl)-propionic acid methyl ester
Figure imgf000096_0001
Adapted from the procedure of example 87 using the product of example 97.
1H NMR (300 MHz, CDCl3) δ 2.68 (t, J= 7.9 Hz, 2H), 2.83 (s, 6H), 3.26 (t, J= 7.7 Hz, 2H), 3.67 (s, 3H), 7.21 (dt, J= 2.6, 8.1 Hz, IH), 7.37 (dd, J= 5.5, 8.4 Hz, IH), 7.58 (dd, J= 2.6, 8.4 Hz, IH)
MS (ESI+) m/z 312 (M+23)
Example 100: Preparation of 5-Fluoro-N, N-dimethyl-2-(3-oxo-propyl)- benzenesulfonamide
Figure imgf000096_0002
Adapted from the procedure of example 88 using the product of example 99.
1H NMR (300 MHz, CDCl3) δ 2.79-2.91 (m, 8H), 3.25 (t, J= 7.5 Hz, 2H), 7.14-7.26 (m, IH), 7.36 (dd, J= 5.5, 8.5 Hz, IH), 7.57 (dd, J= 2.8, 8.7 Hz, IH), 9.81 (s, IH)
MS (ESF) m/z 258 (M-I) Example 101: Preparation of 2-(2-Bromo-3-oxo-propyl)-5-fluoro-N,N-dimethyl benzenesulfonamide
Figure imgf000097_0001
Adapted from the procedure of example 89 using the product of example 100.
1H NMR (300 MHz, DMSO-d6) δ 2.77 (s, 6H), 3.46 (dd, J= 8.4, 14.9 Hz, IH), 3.81 (dd, J= 6.3, 15.0 Hz, IH), 4.88-4.99 (m, IH), 7.49-7.74 (m, 3H), 9.51 (d, J= 2.2 Hz, IH)
Example 102: Preparation of 6-Benzyloxy-l-[2-(2,6-dimethyl-morphoIin-4-yI)- 2- oxo-ethyl]-5-oxo-l,5-dihydro-imidazo[l,2-a]pyrimidine-7-carbothioic acid S-[2- (2- dimethylsulfamoyl-4-fluoro-phenyl)-l-formyl-ethyI] ester
Figure imgf000097_0002
Adapted from the procedure of example 39 using the product of example 101.
MS (ESI+) m/z 736 (M+23) Example 103: Preparation of 2-(2-{6-Benzyloxy-l-[2-(2,6-dimethyI-morpholin -4- yl)-2-oxo-ethyl]-5-oxo-l,5-dihydro-imidazo[l,2-a]pyrimidin-7-yI}-thiazol-5- ylmethyl)-5-fluoro-N,N-dimethyI-benzenesulfonamide
Figure imgf000098_0001
Adapted from the procedure of example 40 using the product of example 102.
1H NMR (300 MHz, DMSO-d6) δ 1.08 (d, J= 6.1 Hz, 3H), 1.15 (d, J= 5.9 Hz, 3H), 2.32 (dd, J= 10.9, 12.9 Hz, IH), 2.73 (s, 6H), 2.74-2.86 (m, IH), 3.38-3.49 (m, IH) , 3.51-3.67 (m, IH), 3.94 (d, J= 12 Hz, IH), 4.13 (d, J= 13.0 Hz, IH), 4.59 (s, 2H), 4.98 (d, J= 16.9 Hz, IH), 5.06 (s, 2H), 5.18 (d, J= 17.1 Hz, IH), 7.26-7.39 (m, 3H), 7.44- 7.65 (m, 6H), 7.70 (d, J= 2.7 Hz, IH), 7.86 (s, IH)
MS (ESI+) m/z 717 (M+23)
Example 104: Preparation of 2-(2-{l-[2-(2,6-Dimethyl-morpholin-4-yl)-2 -oxo- ethyl]-6-hydroxy-5-oxo-l,5-dihydro-imidazo[l,2-a]pyrimidin-7-yl}-thiazol-5- ylmethyl)-5-fluoro-N,N-dimethyl-benzenesulfonamide
Figure imgf000098_0002
Adapted from the procedure of example 8.5 of PCT/AU2007/001980 using the product of example 103. 1H NMR (300 MHz, DMSO-d6) δ 1.07 (d, J- 6.1 Hz, 3H), 1.14 (d, J= 6.2 Hz, 3H), 2.31 (t, J= 11.8 Hz, IH), 2.71-2.85 (m, 7H), 3.30-3.48 (m, IH), 3.49-3.67 (m, IH), 3.95 (d, J= 12.8 Hz, IH), 4.13 (d, J= 13.0 Hz, IH), 4.62 (s, 2H), 4.92 (d, J= 16.7 Hz, IH), 5.13 (d, J= 16.6 Hz, IH), 7.50 (d, J= 2.6 Hz, IH), 7.52-7.68 (m, 4H), 7.90 (s, IH)
MS (ESF) m/z 603 (M-I)
HPLC 94.5 %
Example 105: Preparation of 4-(2-Chloro-acetyl)-piperazine-l-carboxylic acid tert-butyl ester
Figure imgf000099_0001
Piperazine-1-carboxylic acid tert-butyl ester (3.0 g, 16.1 mmol) and DIPEA (3.1 ml, 18.0 mmol) were dissolved in DCM (32 ml) and cooled in ice bath. To the above stirred mixture was added a solution of chloroacetyl chloride (1.33 ml, 16.7 mmol) at 0 0C. Three hours later, the mixture was washed with water, dried and evaporated under reduced pressure. The residue was purified by column chromatography using EA/PE (4/1 ) as eluent to afford the title compound (3.3 g, yield 78.0 %).
1H NMR (300 MHz, CDCl3) δ 1.47 (s, 9H), 3.40-3.53 (m, 6H), 3.54-3.64 (m, 2H), 4.07 (s, 2H)
MS (ESI+) m/z 263 (M + 1)
Example 106: Methyl 6-acetoxy-l-(2-(4-(tert-butoxycarbonyl)piperazin-l-yl) -2- oxoethyl)-5-oxo-l ,5-dihy droimidazo [1 ,2-a] pyrimidine-7-carboxylate
Figure imgf000100_0001
Adapted from the procedure of example 33 using the product of example 105.
1H NMR (300 MHz, DMSO-/) δ 1.42 (s, 9H), 2.26 (s, 3H), 3.32-3.36 (m, 2H), 3.42- 3.48 (m, 4H), 3.52-3.59 (m, 2H), 3.83 (s, 3H), 5.16 (s, 2H), 7.68 (d, J= 2.4 Hz, IH), 7.80 (d, J= 2.4 Hz, IH)
MS (ESr+) m/z 478 (M+ 1)
Example 107: Methyl 6-(benzyloxy)-l-(2-(4-(tert-butoxycarbonyI)piperazin-l-yl) 2-oxoethyl)-5-oxo-l ,5-dihy droimidazo [ 1 ,2-a] pyrimidine-7-carboxylate
Figure imgf000100_0002
Adapted from the procedure of example 34 using the product of example 106.
1H NMR (300 MHz, DMSO-/) δ 1.42 (s, 9H), 3.32-3.37 (m, 2H), 3.40-3.47 (m, 4H), 3.50-3.56 (m, 2H), 3.77 (s, 3H), 5.03 (s, 2H), 5.12 (s, 2H), 7.30-7.44 (m, 5H), 7.60 (d, J= 2.7 Hz, IH), 7.77 (d, J= 2.7 Hz, IH)
MS (ESI+) m/z 526 (M+ 1) Example 108: 6-(Benzyloxy)-l-(2-(4-(tert-butoxycarbonyl)piperazin-l-yl) -2- oxoethyO-S-oxo-ljS-dihydroimidazoIljZ-alpyrimidine-T-carboxylic acid
Figure imgf000101_0001
boc
Adapted from the procedure of example 35 using the product of example 107.
1K NMR (300 MHz, DMSO-d6) δ 1.43 (s, 9H), 3.25-3.60 (m, 8H), 5.02 (s, 2H), 5.12 (s, 2H), 7.29-7.42 (m, 3H), 7.43-7.50 (m, 2H), 7.57 (d, J= 2.7 Hz, IH), 7.73 (d, J= 2.7 Hz, IH)
MS (ESI+) m/z 512 (M+ 1)
Example 109: 6-(Benzyloxy)-l-(2-(4-(tert-butoxycarbonyl)piperazin-l-yl) -2- oxoethy l)-5-oxo- 1 ,5-dihy droimidazo [ 1 ,2-a] py rimidine-7-carbothioic S-acid
Figure imgf000101_0002
Adapted from the procedure of example 36 using the product of example 108.
MS (ESI") m/z 526 (M-I) Example 110: tert-ButyI-4-(2-(6-(benzyloxy)-7-((l-(4-fluorophenyl)-3-oxopropan
2-ylthio)carbonyl)-5-oxoimidazo[l,2-a]pyrimidin-l(5H)-yl)acetyl)piperazine-l- carboxylate
Figure imgf000102_0001
Adapted from the procedure of example 39 using the product of example 109 and the product of example 84
MS (ESI+) m/z 678 (M+l), 700 (M+23), 732 (M+55)
Example 111: tert-Butyl 4-(2-(6-(benzyloxy)-7-(5-(4-fluorobenzyl)thiazol-2- yl)-5- oxoimidazo [l,2-a]pyrimidin-l(5H)-yI)acetyl)piperazine-l-carboxylate
Figure imgf000102_0002
Adapted from the procedure of example 39 using the product of example 110.
1H NMR (300 MHz, DMSO-d6) δ 1.43 (s, 9H), 3.32-3.37 (m, 2H), 3.40-3.50 (m, 4H), 3.55-3.60 (m, 2H), 4.24 (s, 2H), 5.08 (s, 2H), 5.10 (s, 2H), 7.15 (t, J= 8.7 Hz, 2H), 7.30- 7.37 (m, 5H), 7.46-7.51 (m, 2H), 7.57 (d, J= 2.7 Hz, IH), 7.70 (d, J= 2.7 Hz, IH), 7.83 (s, IH)
MS (ESI+) m/z 659 (M+l), 681 (M+23) Example 112: 6-(Benzyloxy)-7-(5-(4-fluorobenzyl)thiazol-2-yl)-l-(2-oxo-2- (piperazin-l-yl)ethyl)imidazo[l,2-a]pyrimidin-5(lH)-one
Figure imgf000103_0001
To a solution of the product of example 111 (4.32g, 8.23mmol) in MeOH (50 ml), 6N HCl (25ml) was added drop-wise at room temperature. The mixture was stirred for 2 hours, after which saturated sodium bicarbonate was added to adjust the pH 9-10, and then extracted with CH2Cl2. The extracts were combined, washed with brine, and then dried over sodium sulfate. The solvent was removed under pressure to give the titled product as yellow slide (3.0 g, 82%yield).
1H NMR (300 MHz, DMSO-d6) δ 3.02-3.10 (m, 2H), 3.14-3.23 (m, 2H), 3.60-3.68 (m, 2H), 3.78-3.83 (m, 2H), 4.25 (s, 2H), 5.09 (s, 2H), 5.13 (s, 2H), 7.17 (t, J= 8.7 Hz, 2H), 7.30-7.38 (m, 5H), 7.44-7.50 (m, 2H), 7.54 (d, J= 2.7 Hz, IH), 7.72 (d, J= 2.7 Hz, IH), 7.86 (s, IH), 8.50-9.18 (brs, IH)
MS (ESI+) m/z 559 (M+l), 581 (M+23)
Example 113: 6-(benzyloxy)-7-(5-(4-fluorobenzyl)thiazol-2-yl)-l-(2-oxo-2-(4- pivaIoylpiperazin-l-yl)ethyl)imidazo[l,2-alpyrimidin-5(lH)-one
Figure imgf000104_0001
A mixture of the product of example 112 (200mg, 0.36mmol) and DIPEA (50.94mg, 0.39mmol) in CH2Cl2 (10 ml) was stirred at O0C. Then pivaloyl chloride (47.48mg, 0.39mmol) was added dropwise. The mixture was stirred at room temperature for 2 hours, after which saturated sodium bicarbonate was added and then extracted with ethyl acetate. The extracts were combined, washed with brine, and then dried over sodium sulfate. The product was purified by column chromatography (CH2Cl2/MeOH=10/l) to give the desired product (207mg, 90 %yield).
1H NMR (300 MHz, DMSO-d6) δ 1.22 (s, 9H), 3.43-3.50 (m, 2H), 3.52-3.71 (m, 6H), 4.24 (s, 2H), 5.08 (s, 2H), 5.11 (s, 2H), 7.16 (t, J= 8.7 Hz, 2H), 7.28-7.38 (m, 5H), 7.45-7.52 (m, 2H), 7.57 (d, J= 2.7 Hz, IH), 7.71 (d, J= 2.7 Hz, IH), 7.83 (s, IH)
MS (ESf) m/z 643 (M+ 1)
Example 114: Preparation of l-{2-[4-(2,2-Dimethyl-propionyI)-piperazin-l-yl] -2- oxo-ethyl}-7-[5-(4-fluoro-benzyl)-thiazol-2-yl]-64iydroxy-lH-imidazo[l,2- a] py rimidin-5-one
Figure imgf000105_0001
Adapted from the procedure of example 8.5 of PCT/AU2007/001980 using the product of example 113.
1H NMR (300 MHz, DMSO-/) δ 1.22 (s, 9H), 3.40-3.50 (m, 2H), 3.50-3.74 (m, 6H), 4.28 (s, 2H), 5.04 (s, 2H), 7.15 (t, J= 9.0 Hz, 2H), 7.34 (dd, J= 6.1, 8.9 Hz, 2H), 7.50 (d, J= 2.8 Hz, IH), 7.62 (d, J= 2.5 Hz, IH), 7.91 (s, IH), 10.83 (s, IH)
MS (ESI+) m/z 575 (M+23)
HPLC 97.7 %
Example 115: Preparation of 2-(2-{6-Benzyloxy-l-[2-(2,6-dimethyl-morpholin -4- yl)-2-oxo-ethyl]-5-oxo-l,5-dihydro-imidazo[l,2-a]pyrimidin-7-yl}-thiazol-5- ylmethyl)-5-fluoro-N-isopropyl-benzamide
Figure imgf000105_0002
Adapted from the procedure of example 77 using isopropylamine. 1H NMR (300 MHz, DMSO-d6) δ 1.07-1.18 (m, 12H), 2.31 (t, J= 12.6 Hz, IH), 2.80 (t, J= 13.2 Hz, IH), 3.42-3.44 (m, IH), 3.58-3.60 (m, IH), 3.89-3.94 (m, IH), 3.97-4.05 (m, IH ), 4.10 (d, J= 12.3 Hz, IH), 4.36 (s, 2H), 4.96 (d, J= 17.1 Hz, IH), 5.04 (s, 2H), 5.16 (d, J= 16.8 Hz, IH), 7.14-7.19 (m, IH), 7.21-7.27 (m, IH), 7.31-7.34 (m, 3H), 7.38-7.43 (m, IH), 7.49-7.54 (m, 2H), 7.55 (d, J= 2.7 Hz, IH), 7.67 (d, , J= 2.7 Hz IH), 7.73 (s, IH), 8.28 (d, J= 7.5 Hz, IH)
MS (ESI+) Wz 673 (M+ 1)
Example 116: Preparation of 2-(2-{l-[2-(2,6-Dimethyl-morpholin-4-yl)-2-oxo- ethyl]-6-hydroxy-5-oxo-l,5-dihydro-imidazo[l,2-a]pyrimidin-7-yl}-thiazol-5- ylmethyl)-5-fluoro-N-isopropyl-benzamide
Figure imgf000106_0001
Adapted from the procedure of example 8.5 of PCT/AU2007/001980 using the product of example 115.
1H NMR (300 MHz, DMSO-d6) δ 1.03-1.28 (m, 12H), 2.30 (t, J= 12.6 Hz, IH), 2.79 (t, J= 12.1 Hz, IH), 3.39-3.42 (m, IH), 3.57-3.62 (m, IH), 3.91 (d, J= 13.8 Hz, IH), 3.99- 4.06 (m, IH), 4.11 (d, J= 12.6 Hz, IH), 4.37 (s, 2H), 4.90 (d, J= 16.5 Hz, IH), 5.16 (d, J= 17.1 Hz, IH), 7.15-7.28 (m, 2H), 7.42-7.47 (m, IH), 7.48 (d, J= 2.7 Hz, IH), 7.59 (d, J= 2.7 Hz, IH), 7.80 (s, IH), 8.32 (d, J= 7.5 Hz, IH), 10.88 (s, IH).
MS (ESI") m/z 581(M-I) Example 117: 2-((2-(6-(benzyIoxy)-l-(2-((2S, 6R)-2,6-dimethylmorphoIino) -2- oxoethyl)-5-oxo-l,5-dihydroimidazo[l,2-a]pyrimidin-7-yl)thiazol-5-yl)methyl)-5- fluorobenzamide
Figure imgf000107_0001
A mixture of the product of example 76 (63mg, O.lmmol), BOP (66.3mg, 0.15mmol), HOBt (20.2mg, 0.15mmol), NH4Cl (1 lmg, 0.2mmol) and DIPEA (46mg, 0.4mmol) in DMF (1 ml) was stirred at rt for 1Oh, after which water was added and then extracted with CH2Cl2. The extracts were combined, washed with brine, and then dried over sodium sulfate. The product was purified by column chromatography (CH2Cl2/EA/Me0H=8/2/ 1 ) to give the desired product (38mg, 60 %yield).
1H NMR (300 MHz, DMSO-/) δ 1.09 (d, J= 6.1 Hz, 3H), 1.15 (d, J= 6.1 Hz, 3H), 2.26-2.39 (m, IH), 2.75-2.87 (m, IH), 3.39-3.52 (m, IH), 3.54-3.67 (m, IH), 3.89-3.99 (m, IH), 4.08-4.19 (m, IH), 4.43 (s, 2H), 4.98 (d, J= 17.4 Hz, IH), 5.07 (s, 2H), 5.19 (d, J= 16.5 Hz, IH), 7.23-7.45 (m, 6H), 7.48-7.60 (m, 4H), 7.70 (d, J= 3.0 Hz, IH), 7.76 (s, IH), 7.94 (s, IH)
MS (ESI+) m/z 631 (M+ 1), 653 (M+23)
Example 118: 2-((2-(l-(2-((2S,6R)-2,6-dimethylmorpholino)-2-oxoethyl) -6- hydroxy-5-oxo-l,5-dihydroimidazo[l,2-a]pyrimidin-7-yl)thiazol-5-yl)methyI)-5- fluorobenzamide
Figure imgf000108_0001
Adapted from the procedure of example 8.5 of PCT/AU2007/001980 using the product of example 117.
1H NMR (300 MHz, DMSO-d6) δ 1.08 (d, J= 6.1 Hz, 3H), 1.15 (d, J= 6.1 Hz, 3H), 2.26-2.38 (m, IH), 2.75-2.87 (m, IH), 3.39-3.52 (m, IH), 3.54-3.66 (m, IH), 3.94 (d, J= 13.8 Hz, IH), 4.13 (d, J= 12.9 Hz, IH), 4.44 (s, 2H), 4.92 (d, J= 16.8 Hz, IH), 5.11 (d, J= 16.8 Hz, IH), 7.23-7.34 (m, 2H), 7.41-7.47 (m, IH), 7.49 (d, J= 3.0 Hz, IH), 7.56 (s, IH), 7.61 (d, J= 3.0 Hz, IH), 7.83 (s, IH), 7.96 (s, IH), 10.91 (s, IH)
MS (ESI+) m/z 541 (M+ 1)
Example 119: Preparation of 2-Chloro-l-(2-methyl-piperidin-l-yl)-ethanone
Figure imgf000108_0002
Adapted from the procedure of example 105 using 2-methyl-piperidine.
The crude product was used directly in the next step.
MS (ESf) m/z 176 (M[35]+l), 178 (M[37]+l) Example 120: Methyl-6-acetoxy-l-(2-(2-methyIpiperidin-l-yl)-2-oxoethyl)-5-oxo- 1,5-dihydroimidazo [1 ,2-a] pyrimidine-7-carboxylate
Figure imgf000109_0001
Adapted from the procedure of example 33 using the product of example 119.
1H NMR (300 MHz, DMSO-d6) δ 1.12-1.88 (m, 9H), 2.36 (s, 3H), 2.68-2.85 (m, 0.5 H), 3.19-3.36 (m, 0.5H), 3.57-3.72 (m, 0.5H), 3.93 (s, 3H), 4.13-4.27 (m, 0.5H), 4.34- 4.48 (m, 0.5H), 4.75-5.14 (m, 2.5H), 7.24 (d, J= 2.7 Hz, IH), 7.62 (d, J= 2.7 Hz, IH)
MS (ESf) m/z 391 (M+l)
Example 121: Preparation of methyl6-(benzyloxy)-l-(2-(2-methylpiperidin-l-yl) 2-oxoethyl)-5-oxo-l,5-dihydroimidazo[l,2-a]pyrimidine-7-carboxylate
O N N COOMe
Figure imgf000109_0002
Adapted from the procedure of example 34 using the product of example 120.
1H NMR (300 MHz, DMSO-d6) δ 1.00-1.74 (m, 9H), 2.60-2.75 (m, 0.5H), 3.08-3.24 (m, 0.5H), 3.47-3.62 (m, 0.5H), 3.70 (s, 3H), 3.99-4.12 (m, 0.5H), 4.24-4.38 (m, 0.5H), 4.65-5.00 (m, 2.5H), 5.09 (s, 2H), 7.15 (d, J= 2.7 Hz, IH), 7.18-7.34 (m, 3H), 7.36-7.47 (m, 2H), 7.55 (d, J= 2.5 Hz, IH)
MS (ESI+) m/z 439 (M+l), 461 (M+23) Example 122: Preparation of 6-(benzyloxy)-l-(2-(2-methylpiperidin-l-yl)-2- oxoethyO-S-oxo-l^-dihydroimidazotl^-alpyrimidine-T-carboxylic acid
Figure imgf000110_0001
Adapted from the procedure of example 35 using the product of example 121.
1H NMR (300 MHz, DMSO-/) δ 1.07-1.86 (m, 9H), 2.67-2.85 (m, 0.5H), 3.20-3.37 (m, 0.5H), 3.54-3.69 (m, 0.5H), 4.09-4.23 (m, 0.5H), 4.32-4.46 (m, 0.5H), 4.74-5.15 (m, 2.5H), 5.39 (s, 2H), 7.23(d, J= 2.7 Hz, IH), 7.30-7.42 (m, 3H), 7.46-7.56 (m, 2H), 7.65 (d, J= 2.5 Hz, IH)
MS (ESI+) m/z 425 (M+ 1), 447 (M+23)
Example 123: Preparation of 6-(benzyloxy)-l-(2-(2-methylpiperidin-l-yl)-2- oxoethy^-S-oxo-l-S-dihydroimidazoll^-alpyrimidine-T-carbothioic S-acid
Figure imgf000110_0002
Adapted from the procedure of example 36 using the product of example 122.
MS (ESI+) m/z 463 (M+23) Example 124: Preparation of S-l-(4-fluorophenyl)-3-oxopropan-2-yl 6- (benzyloxy)-l-(2-(2-methylpiperidin-l-yl)-2-oxoethyl)-5-oxo-l,5- dihy droimidazo [1 ,2-a] pyrimidine-7-carbothioate
Figure imgf000111_0001
Adapted from the procedure of example 39 using the product of example 123 and the product of example 72.
MS (ESf) m/z 645 (M+55)
Example 125: Preparation of 6-(benzyloxy)-7-(5-(4-fluorobenzyl)thiazol-2-yl)-l- (2-(2-methylpiperidin-l-yl)-2-oxoethyl)imidazo[l,2-a]pyrimidin-5(lH)-one
Figure imgf000111_0002
Adapted from the procedure of example 40 using the product of example 124.
1H NMR (300 MHz, DMSO-d6) δ 1.09-1.82 (m, 9H), 2.66-2.83 (m, 0.5H), 3.18-3.34 (m, 0.5H), 3.60-3.78 (m, 0.5H), 4.16 (s, 2H), 4.19-4.31 (m, 0.5H), 4.34-4.47 (m, 0.5H), 4.76-5.01 (m, 2.5H), 5.27 (s, 2H), 7.02 (t, J= 8.7 Hz, 2H), 7.11-7.36 (m, 6H), 7.48 (m, 2H), 7.62 (d, J= 2.7Hz, IH), 7.75 (s, IH)
MS (ESI+) m/z 572 (M+l), 594 (M+23) Example 126: 7-(5-(4-fluorobenzyl)thiazol-2-yl)-6-hydroxy-l-(2-(2- methylpiperidin-l-yl)-2-oxoethyl)imidazo[l,2-a]pyrimidin-5(lH)-one
Figure imgf000112_0001
Adapted from the procedure of example 8.5 of PCT/AU2007/001980 using the product of example 125.
1H NMR (300 MHz, DMSO-/) δ 1.00-1.77 (m, 9H), 2.58-2.77 (m, 0.5H), 3.07-3.27 (m, 0.5H), 3.65-3.83 (m, 0.5H), 4.05-4.20 (m, 0.5H), 4.28 (s, 2H), 4.46-4.67 (m, 0.5H), 4.80-5.12 (m, 2.5H), 7.17 (t, J= 8.7 Hz, 2H), 7.31-7.41 (m, 2H), 7.53 (s, IH), 7.61 (d, J= 2.4Hz, IH), 7.90 (s, IH)
MS (ESI+) m/z 482 (M+l), 504 (M+23)
HPLC 92.7 %
Example 127: Preparation of 4-fluoro-2-methylsulfanyl-l-nitro-benzene
Figure imgf000112_0002
To a mixture of compound 2,4-difluoro-l-nitro-benzene (1Og, 62.9mmol), pyridine (10ml, 124mmol) in MeOH (30 ml) was added the solution of sodium thiomethoxide(20%, 300mmol) in methanol drop-wise at O0C. The mixture was stirred for 2 hour and then diluted with dichloromethane. The mixture was washed with brine, dried over MgSO4 and evaporated under reduced pressure. The resulting residue was recrystallized from ethyl acetate to give titled compound (1Og, yield 85%)
1H NMR (300 MHz, CDCl3) δ 2.50 (s, 3H), 6.93-6.98 (m, IH), 7.05 (dd, J= 2.7, 9.6 Hz, IH), 8.35 (m, IH). Example 128: Preparation of 4-fIuoro-2-methylsulfanyl-lphenyIamine
Figure imgf000113_0001
A mixture of 4-fluoro-2-methylsulfanyl-l-nitro-benzene (3.4 g, 18.2mmol) and 300mg PdVC in EtOH (100 ml) was stirred under H2 (5MP) at room temperature for about 3 hours. Then the reaction mixture was filtered and the filtrate was concentrated. The residue was purified by column chromatography (PE/EA=20/l) to give the titled compound (2.8g, 96%yield)
1H NMR (300 MHz, CDCl3) δ 2.38 (s, 3H), 3.87 (brs, 2H), 6.62-6.66 (m, IH), 6.75- 6.82 (m, IH), 7.01-7.05 (dd, J=3, 9 Hz, IH)
Example 129: Preparation of 4-fluoro-l-iodo-2-methylsulfanyl-benzene
Figure imgf000113_0002
To a suspension of 4-fluoro-2-methylsulfanyl-lphenylamine (1.9g, 1 lmol) in HCl (4N, 40ml) was added drop-wise the solution OfNaNO2 (869mg, 12.6mol) in 6ml water at O0C. The mixture was stirred at O0C for 1.5h. Then KI (3.5g 21.1mmol) in 6ml water was added. The mixture was warmed to room temperature and stirred overnight, after which it was extracted with ethyl acetate. The combined organic layers were washed with brine, dried and concentrated. The residue was purified by flash column chromatography (PE) to give the titled compound (1.7g, 40%yield).
1H NMR (300 MHz, CDCl3) δ 2.46 (s, 3H), 6.57-6.64 (m, IH), 6.79-6.84 (dd, J= 3.0, 9.9 Hz, IH), 7.68-7.74 (m, IH)
MS (EI+) m/z 268 (M+) Example 130: Preparation of Preparation of 3-(4-fluoro-2-methylsulfanyl-phenyl) - acrylic acid methyl ester
Figure imgf000114_0001
4-fluoro-l-iodo-2-methylsulfanyl-benzene (6.8 g 25.3mmol), K2CO3 (9.9 g, 63.4mmol), methyl acrylate (5.7 ml, 63.4 mmol), Tetra-n-butylammonium chloride (7.0 g, 25.3 mmol) and Pd(OAc)2 (Ll g, 5.07 mmol) were mixed in DMF (150ml). The mixture was heated at 50 0C under the atmosphere of N2 overnight, after which water was added and then extracted with ethyl acetate. The extracts were combined, washed with brine, dried over sodium sulfate and evaporated under reduced pressure. The residue was purified by column chromatography to give the desired product (4.8g, yield 89%).
1H NMR (300 MHz, CDCl3) δ 2.50 (s, 3H), 3.83 (s, 3H), 6.31-6.37 (d, J=15.9 Hz, IH), 6.84-6.91 (m, IH), 6.96-7.00 (dd, J= 2.4, 9.6 Hz, IH), 7.49-7.54 (m, IH), 8.06 (d, J= 16.2 Hz, IH)
MS (ESI+) m/z 227 (M+ 1)
Example 131: Preparation of 3-(4-fluoro-2-methylsulfanyl-phenyl)-propionic acid methyl ester
Figure imgf000114_0002
A mixture of 3-(4-fluoro-2-methylsulfanyl-phenyl)-acrylic acid methyl ester (11 g, 48.6 mmol) and Ig Pd/C in EtOH (100 ml) was stirred under H2 (5 MP) at room temperature for about 6 hours. The reaction mixture was filtered and the filtrate was concentrated. The residue was purified by flash column chromatography to give the titled compound (Hg, yield 100%)
1H NMR (300 MHz, CDCl3) δ 2.47 (s, 3H), 2.64(t, J= 7.8 Hz, 2H), 3.00(t, J= 7.8 Hz, 2H), 3.68 (s, 3H), 6.74-6.80 (m, IH), 6.86-6.90 (dd, J= 2.4, 9.6 Hz, IH), 7.09-7.14 (m, IH)
MS (ESI+) m/z 251 (M+23)
Example 132: Preparation of 3-(4-FIuoro-2-methanesulfonyl-phenyl)-propionic acid methyl ester
Figure imgf000115_0001
To a solution of 3 -(4-fluoro-2-methylsulfanyl-phenyl)-propionic acid methyl ester (Ig, 4.3 mmol) in acetic acid (10 ml) was added dropwise the solution of KMnO4 (1.3g, 8.2mmol) in 10ml H2O. The mixture was stirred at room temperature for 3 hours, and then poured into saturated Na2S2O3 solution and extracted with ethyl acetate. The organic layer was washed with brine, and then dried over Na2SO4. The product was purified by column chromatography to give the titled compound (1 ,2g, yield 98%)
1H NMR (300 MHz, CDCl3) δ 2.75 (t, J= 7.8 Hz, 2H)D3.14 (s, 3H), 3.30 (t, J= 7.8 Hz, 2H), 3.68 (s, 3H), 7.24-7.31 (m, IH), 7.38-7.43 (m, IH), 7.76 (dd, J= 3, 8.7 Hz, IH),
MS (ESI+) m/z 283 (M+23)
Example 133: Preparation of 3-(4-Fluoro-2-methanesulfonyl-pheny.)-propan- l-ol
Figure imgf000116_0001
To a solution of the product of example 132 (1.2 g, 4.6 mmol ) in dried THF (20 ml), was added LiAlH4 (344 mg 9.3 mmol) at O0C. The mixture was stirred at room temperature for 3hours, after which H2O (10 ml) was added dropwise to quench the reaction. The result mixture was extracted with ethyl acetate. The extracts were washed with H2O, and then dried over Na2SO4 and evaporated under reduced pressure. The residue was purified by column chromatography to give the titled compound (860mg, 80% yield)
1H NMR (300 MHz, CDCl3) δ 1.91-2.00 (m, 2H), 3.08-3.11 (m, 2H), 3.10 (s, 3H), 3.66 (t, J= 12 Hz, 2H), 7.29 (dd, J= 2.7, 7.5 Hz, IH), 7.38-7.43 (m, IH), 7.76 (dd, J= 2.7, 8.7 Hz, IH).
MS (ESI+) m/z 233 (M+ 1)
Example 134 : Preparation of 3-(4-FIuoro-2-methanesulfonyl-phenyl)- propionaldehyde
Figure imgf000116_0002
To the solution of the product of example 133 (1.0 g, 4.3 mmol) in dichloromethane (100 ml), was added Pyridinium Chlorochromate (1.65 g 6.4 mmol) at O0C. The mixture was stirred at room temperature for 5 hours. The result mixture was washed with water, and the organic layer was dried over Na2SO4. The product was purified by column chromatography to give the titled compound (555 mg, yield 58%) 1R NMR (300 MHz, CDCl3) δ 2.46 (s, 3H), 2.97 (t, J= 7.5 Hz, 2H), 3.66 (t, J= 7.5 Hz, 2H), 6.73-6.79 (m, IH), 6.86 (dd, J= 2.7, 9.6 Hz, IH), 7.07-7.12 (m, IH), 9.81 (s, IH).
MS (ESI+) m/z 285 (M+55 )
Example 135: Preparation of 2-Bromo-3-(4-fluoro-2-methanesulfonyl-phenyl)- propionaldehyde
Figure imgf000117_0001
Adapted from the procedure of example 38 using the product of 134.
The titled product was used directly in next step.
Example 136: Preparation of 6-Benzyloxy-l-[2-(2,6-dimethyl-morpholin-4-yl)-2- oxo-ethyll-S-oxo-l-S-dihydro-imidazofl^-aJpyrimidine-T-carbothioic acid S-[l-(4- fluoro-2- methanesulfonyl-benzyl)-2-oxo-ethyl] ester
Figure imgf000117_0002
Adapted from the procedure of example 39 using the products of 36 and 135.
MS (ESI+) m/z 685 (M+ 1 ) Example 137: Preparation of 6-BenzyIoxy-l-[2-(2,6-dimethyl-morpholin-4- yl)-2- oxo-ethyl]-7-[5-(4-fluoro-2-methanesuIfonyI-benzyl)-thiazol-2-yl]-lH-imidazo[l,2- a] pyrimidin-5-one
Figure imgf000118_0001
Adapted from the procedure of example 40 using the product of example 136
1H NMR (300 MHz, CDCl3) δ 1.22 (d, J= 6.4 Hz, 3H), 1.26 (d, J= 6.0 Hz, 3H)D2.42 (t, J= 12.9 Hz, IH), 2.92 (s, 3H), 2.95 (t, J= 12.6 Hz, IH), 3.57-3.59 (m, IH), 3.65-3.69 (m, IH), 3.83 (d, J= 12.1 Hz, IH), 4.36 (d, J= 13.5 Hz, IH), 4.70 (s, 2H), 4.96 (d, J= 16.5 Hz, IH), 5.27 (d, J= 16.5 Hz, IH) 5.32 (s, 2H),, 7.20 (d, J= 2.4 Hz, IH), 7.31-7.39 (m, 5H), 7.48-7.51 (m, 2H), 7.65 (d, J= 2.4Hz, IH), 7.80-7.84 (m, 2H).
MS (ESI+) m/z 688 (M+23 )
Example 138: Preparation of l-[2-(2,6-Dimethyl-morpholin-4-yl)-2-oxo-ethyl] -7- [5-(4-fluoro-2-methanesulfonyI-benzyl)-thiazoI-2-yl]-6-hydroxy-lH-imidazo[l,2- a] pyrimidin-5-one
Figure imgf000118_0002
Adapted from the procedure of example 8.5 of PCT/AU2007/001980 using the product of example 137.
1H NMR (300 MHz, CDCl3) δ 1.08 (d, J= 6.0 Hz, 3H), 1.15 (d, J= 6.4 Hz, 3H), 2.32 (t, J= 10.1 Hz, IH), 2.79 (t, J= 12.3 Hz, IH), 3.34 (s, 3H), 3.38-3.40 (m, IH), 3.57-3.61 (m, IH), 3.91-3.97 (m, IH), 4.09-4.15 (m, IH), 4.70 (s, 2H), 4.93 (d, J= 16.5 Hz, IH), 5.13 (d, J= 16.2 Hz, IH), 7.51 (d, J= 2.7 Hz, IH), 7.59-7.63 (m, 3H), 7.74-7.77 (m, IH), 7.93 (m, IH), 10.83 (s, IH).
MS (ESI+) m/z 576 (M+ 1 )
HPLC 97.8 %
Example 139: Preparation of 2-(2-{6-Benzyloxy-l-[2-(2, 6-dimethyl-morpholin-4- yl)-2-oxo-ethyl] -5-oxo-l ,5-dihydro-imidazo [1 ,2-a] pyrimidin-7-yl}-thiazol-5- ylmethyl)-N-cyclopropyl-5-fIuoro-benzamide
Figure imgf000119_0001
Adapted from the procedure of example 77 using the product of example 76 and cyclopropylamine.
An impure intermediate was used for the subsequent step.
MS (ESI+) m/z 671 (M+l)
Example 140: Preparation of N-Cyclopropyl-2-(2-{l-[2-(2,6-dimethyl-morpholin- 4-yl)-2-oxo-ethyI]-6-hydroxy-5-oxo-l,5-dihydro-imidazo[l,2-a]pyrimidin-7-yl}- thiazol-5-ylmethyl)-5-fluoro-benzamide
Figure imgf000119_0002
Adapted from the procedure of example 8.5 of PCT/AU2007/001980 using the product of example 139.
1H NMR (300 MHz, DMSO-d6) δ 0.47-0.55 (m, 2H), 0.64-0.72 (m, 2H), 1.08 (d, J= 6.2 Hz, 3H), 1.16 (d, J= 5.9 Hz, 3H), 2.32 (t, J= 11.8 Hz, IH), 2.74-2.87 (m, 2H), 3.35- 3.51 (m, IH), 3.52-3.69 (m, IH), 3.94 (d, J= 13.3 Hz, IH), 4.13 (d, J= 12.6 Hz, IH), 4.39 (s, 2H), 4.92 (d, J= 17.0 Hz, IH), 5.13 (d, J= 16.8 Hz, IH), 7.18-7.34 (m, 2H), 7.46 (dd, J= 5.6, 8.6 Hz, IH), 7.50 (d, J= 2.7 Hz, IH), 7.62 (d, J= 2.9 Hz, IH), 7.84 (s, IH), 8.52 (d, J= 4. I Hz, IH).
MS (ESI+) m/z 581 (M+l)
HPLC 90.1 %
Example 141 : 6-(benzyloxy)-7-(5-(4-fluorobenzyl)thiazoI-2-yl)-l-(2-(4-methyl piperazin-l-yl)-2-oxoethyl)imidazo[l,2-a]pyrimidin-5(lH)-one
Figure imgf000120_0001
A solution of the paraformaldehyde (300mg) in MeOH (3 ml) was stirred at 70°C for about Ih. After cooling down to 0°C, this solution was added dropwise to a mixture of the product of example 124 (341mg, 0.61mmol), NaBH3CN (115mg, 1.83mmol) and MeCOONa (105mg, 1.22mmol) in MeOH (10 ml) at 0°C. Then the mixture was warmed to room temperature and stirred for 2 hours, after which saturated sodium bicarbonate was added and then the mixture was extracted with ethyl acetate. The extracts were combined, washed with brine, and then dried over sodium sulfate. The product was purified by column chromatography (CH2Cl2ZMeOH=IOZl) to give the desired product (279mg, 80 %yield).
1H NMR (300 MHz, DMSO-/) δ 2.20 (s, 3H), 2.24-2.30 (m, 2H), 2.36-2.43 (m, 2H), 3.41-3.47 (m, 2H), 3.52-3.60 (m, 2H), 4.25 (s, 2H), 5.08 (s, 4H), 7.16 (t, J= 8.7 Hz, 2H), 7.30-7.38 (m, 5H), 7.46-7.52 (m, 2H), 7.58 (d, J= 2.7 Hz, IH), 7.70 (d, J- 2.7 Hz, IH), 7.85 (s, IH)
MS (ESf) m/z 573 (M+l), 595 (M+23)
Example 142: 7-(5-(4-fluorobenzyl)thiazol-2-yl)-6-hydroxy-l-(2-(4-methyl piperazin-l-yl)-2-oxoethyl)imidazo[l,2-a]pyrimidin-5(lH)-one
Figure imgf000121_0001
Adapted from the procedure of example 8.5 of PCT/AU2007/001980 using the product of example 141.
1H NMR (300 MHz, CDCl3) δ 2.36 (s, 3H), 2.43-2.60 (m, 4H), 3.62-3.79 (m, 4H), 4.19 (s, 2H), 4.86 (s, 2H), 6.99-7.10 (m, 3H), 7.18-7.25 (m, 2H), 7.53-7.63 (m, 2H)
MS (ESI+) m/z 483 (M+l), 505 (M+23)
Example 143: 7-(5-(4-fluorobenzyl)thiazoI-2-yl)-6-hydroxy-l-(2-oxo-2-(piperazin - l-yl)ethyl)imidazo[l,2-a]pyrimidin-5(lH)-one
Figure imgf000121_0002
Adapted from the procedure of example 8.5 of PCT/AU2007/001980 using the product of example 112. 1H NMR (300 MHz, CDCl3) δ 2.83-2.96 (m, 4H), 3.57-3.67 (m, 4H), 4.19 (s, 2H), 4.86 (s, 2H), 7.00-7.10 (m, 3H), 7.20-7.26 (m, 2H), 7.57-7.64 (m, 2H)
MS (ESI+) m/z 491 (M+23)
Example 144: Preparation of 2-(bromomethyl)thiazole
Figure imgf000122_0001
The titled compound was made by bromination of 2-methylthiazole in CCl4 with NBS/AIBN in 35 % yield.
1H NMR (300 MHz, CDCl3) δ 4.76 (s, 2H), 7.39 (d, J= 3.2 Hz, IH), 7.76 (d, J= 3.2 Hz, IH)
Example 145: Methyl 6-acetoxy-5-oxo-l-(thiazoI-2-ylmethyl)-l,5- dihydroimidazo[l,2-a]pyrimidine-7-carboxylate
Figure imgf000122_0002
Adapted from the procedure of example 33 using the product of example 144.
1H NMR (300 MHz, DMSO-d6) δ 2.27 (s, 3H), 3.84 (s, 3H), 5.73 (s, 2H), 7.75-7.80 (m, 2H), 7.87 (d, J= 2.6 Hz, IH), 7.92 (d, J= 2.6 Hz, IH)
MS (ESf) m/z 349 (M+ 1)
MS (ESf) m/z 307 (M+ 1) Example 146: Preparation of methyl 6-(benzyloxy)-5-oxo-l-(thiazol-2-ylmethyl) l,5-dihydroimidazo[l,2-a]pyrimidine-7-carboxylate
Figure imgf000123_0001
Adapted from the procedure of example 34 using the product of example 145.
1H NMR (300 MHz, DMSO-/) δ 3.78 (s, 3H), 5.03 (s, 2H), 5.67 (s, 2H), 7.30-7.46 (m, 5H), 7.72-7.87 (m, 4H)
MS (ESI+) m/z 397 (M+l)
Example 147: Preparation of 6-(benzyloxy)-5-oxo-l-(thiazoI-2-ylmethyl) -1,5- dihydroimidazo[l,2-a]pyrimidine-7-carboxyIic acid
Figure imgf000123_0002
Adapted from the procedure of example 35 using the product of example 146.
1H NMR (300 MHz, DMSO-/) δ 5.02 (s, 2H), 5.68 (s, 2H), 7.30-7.50 (m, 5H), 7.74- 7.84 (m, 4H)
MS (ESI') m/z 381 (M-I)
Example 148: Preparation of 6-(benzyloxy)-7-(5-(4-fluorobenzyl)thiazol -2-yl)-l- (thiazol-2-yl methyl)imidazo[l,2-a]pyrimidin-5(lH)-one
Figure imgf000124_0001
Adapted from the procedure of example 36, 39, 40 using the product of example 147.
1H NMR (300 MHz, DMSO-d6) δ 4.25 (s, 2H), 5.08 (s, 2H), 5.67 (s, 2H), 7.11-7.21 (m, 2H), 7.27-7.40 (m, 5H), 7.46-7.53 (m, 2H), 7.72-7.86 (m, 5H)
MS (ESI+) m/z 530 (M+ 1), 552 (M+23)
Example 149: Preparation of 7-(5-(4-fluorobenzyl)thiazol-2-yl)-6-hydroxy-l- (thiazol-2-ylmethyl)imidazo[l,2-a]pyrimidin-5(lH)-one
Figure imgf000124_0002
Adapted from the procedure of example 8.5 of PCT/AU2007/001980 using the product of example 148.
1H NMR (300 MHz, DMSO-d6) δ 4.29 (s, 2H), 5.60 (s, 2H), 7.12-7.23 (m, 2H), 7.32- 7.42 (m, 2H), 7.66-7.80 (m, 4H), 7.91 (s, IH)
MS (ESf) m/z 440 (M+l), 462 (M+23), 494 (M+55)
HPLC 85.2 % Example 150: Preparation of 2-Chloro-l-(4-methyl-piperidin-l-yI)-ethaπone
Figure imgf000125_0001
To a mixture of 4-Methyl-piperidine(5.00 g, 50.42 mmol)and triethylamine (7.65 g, 75.63 mmol) in ethyl ether (25 ml) was added dropwise a solution of chloroacetyl chloride (6.83g, 60.50mmol) in ethyl ether (3OmL). The mixture was warmed to room temperature and stirred overnight. Then the mixture was diluted with dichloromethane, washed with water, dried and concentrated in vacuo to afford the crude titled compound (crude yield 100 %), which was used directly in the subsequent step reaction.
Example 151: Preparation of 6-Acetoxy-l-[2-(4-methyl-piperidin -l-yl)-2-oxo- ethyl]-5-oxo- l,5-dihydro-imidazo[l,2-a]pyrimidine-7-carboxyIic acid methyl ester
Figure imgf000125_0002
Adapted from the procedure of example 33 using the product of example 150.
1H NMR (300 MHz, DMSO-d6) δ 0.93 (d, J= 6.0 Hz, 3H), 1.16-1.20 (m, 1H),1.62-1.74 (m, 4H), 2.27 (s, 3H), 2.63 (t, J= 12.6 Hz, IH), 3.10 (t, J= 11.4 Hz, IH), 3.84 (s, 3H), 3.90 (d, J= 13.5 Hz, IH), 4.25 (d, J= 13.2 Hz, IH), 5.10 (d, J= 16.8 Hz, IH), 5.17 (d, J= 16.8 Hz, IH), 7.70 (d, J= 2.4 Hz, IH), 7.81 (d, J= 2.4 Hz, IH).
MS (ESI') m/z 389 (M-I) Example 152: Preparation of 6-Benzyloxy-l-[2-(4-methyl-piperidin -l-yl)-2-oxo- ethyl]-5-oxo- l,5-dihydro-imidazo[l,2-a]pyrimidine-7-carboxyIic acid methyl ester
Figure imgf000126_0001
Adapted from the procedure of example 34 using the product of example 151.
1H NMR (300 MHz, DMSO-rf6) δ 0.92 (d, J= 6 Hz, 3H), 0.98-0.99 (m, IH), 1.15-1.23 (m, 1H),1.62-1.74 (m, 3H), 2.61 (t, J= 12.6 Hz, IH), 3.07 (t, J= 11.7 Hz, IH), 3.78 (s, 3H), 3.90 (d, J= 13.8 Hz, IH), 4.25 (d, J= 13.2 Hz, IH), 5.01-5.14 (m, 2H), 5.03 (s, 2H), 7.33-7.44 (m, 5H), 7.62 (d, J= 2.7 Hz, IH), 7.81 (d, J= 2.7 Hz, IH).
MS (ESI+) m/z 439(M+l),461(M+23)
Example 153: Preparation of 6-Benzyloxy-l-[2-(4-methyl-piperidin-l -yl)-2-oxo- ethy 1] -5- oxo- 1 ,5-dihy dro-im idazo [ 1 ,2-a] py rimidine-7-carboxy Hc acid
Figure imgf000126_0002
Adapted from the procedure of example 35 using the product of example 152.
1H NMR (300 MHz, DMS(W5) δ 0.93 (d, J= 6 Hz, 3H), 0.99-1.00 (m, IH), 1.17-1.24 (m, 1H),1.61-1.73 (m, 3H), 2.62 (t, J= 12.0 Hz, IH), 3.08 (t, J= 12.9 Hz, IH), 3.90 (d, J= 13.5 Hz, IH), 4.26 (d, J= 13.2 Hz, IH), 5.02 (s, 2H), 5.07-5.15 (m, 2H), 7.33-7.42 (m, 3H), 7.45-7.49 (m, 2H), 7.60 (d, J= 2.8 Hz, IH), 7.73 (d, J= 2.6 Hz, IH), 13.47 (s, IH). MS (ESI+) m/z 425 (M+ 1), 447 (M+23)
Example 154: Preparation of 6-Benzyloxy-l-[2-(4-methyl-piperidin-l-yl) -2-oxo- ethy 1] -5-oxo- 1 ,5-dihy d ro-im idazo [ 1 ,2-a] py rimidine-7-carbothioic acid
Figure imgf000127_0001
Adapted from the procedure of example 36 using the product of example 153.
MS (ESI") m/z 439 (M-I)
Example 155: Preparation of 6-Benzyloxy-l-[2-(4-methyl-piperidin-l-yl)-2-oxo- ethyl]-5-oxo- l,5-dihydro-imidazo[l,2-a]pyrimidine-7-carbothioic acid S-[2-(4- fluoro-phenyl)-l-formyl- ethyl] ester
Figure imgf000127_0002
Adapted from the procedure of example 39 using the product of example 154 and the product of example 72.
MS (ESI+) m/z 591 (M+ 1) Example 156: Preparation of 6-BenzyIoxy-7-[5-(4-fluoro-benzyl)-thiazoI-2 -y I]-I- [2-(4-methyl-piperidin-l-yl)-2-oxo-ethyl]-lH-imidazo[l,2-a]pyrimidin-5-one
Figure imgf000128_0001
Adapted from the procedure of example 38 using the product of 155.
1H NMR (300 MHz, DMSO-/) δ 0.92 (d, J= 4.8 Hz, 3H), 0.98-1.00 (m, IH), 1.14- 1.23 (m, 1H),1.6O-1.73 (m, 3H), 2.61 (t, J= 12.6 Hz, IH), 3.04-3.13 (m, IH), 3.90-3.94 (m, IH), 4Λ1-422, (m, IH), 4.24 (s, 2H), 5.04-5.06 (m, 2H), 5.07 (s, 2H), 7.09-7.20 (m, 2H), 7.30-7.36 (m, 5H), 7.49-7.52 (m, 2H), 7.59 (d, J= 2.7 Hz, IH), 7.70 (d, J= 2.4 Hz, IH), 7.85 (s, IH).
MS (ESI") m/z 570 (M-I)
Example 157: Preparation of 7-[5-(4-Fluoro-benzyl)-thiazol-2-yl]-6-hydroxy-l- [2- (4- methyl-piperidin-l-yl)-2-oxo-ethyl]-lH-imidazo[l,2-a]pyrimidin-5-one
Figure imgf000128_0002
Adapted from the procedure of example 8.5 of PCT/AU2007/001980 using the product of example 156.
1H NMR (300 MHz, DMSO-/) δ 1.10-1.24 (m, 4H), 1.40-1.71 (m, 4H), 2.60-2.64 (m, IH), 3.02-3.11 (m, IH), 3.87-3.94 (m, IH), 4.16-4.23 (m, IH), 4.26 (s, 2H), 4.94-5.06 (m, 2H), 7.11-7.17 (m, 2H), 7.30-7.36 (m, 2H), 7.50 (d, J= 2.4 Hz, IH), 7.60 (d, J= 2.7 Hz, IH), 7.90 (s, IH), 10.8 (s, IH).
MS (ESI+) m/z 482 (M+l)D504 (M+23)
HPLC 91.6 %
Example 158: Preparation of 3-(4-fluorophenyl)butanal
Figure imgf000129_0001
Adapted from the procedure of example 37 using crotonyl alcohol.
1H NMR (300 MHz, DMSO-d6) δ 1.20 (d, J= 7.2 Hz, 3H), 2.68-2.74 (m, 2H), 3.26- 3.40 (m, IH), 7.11 (t, J= 9.3 Hz, 2H), 7.27-7.34 (m, 2H), 9.61 (t, J= 1.8 Hz, IH)
Example 159: Preparation of 2-bromo-3-(4-fluorophenyl)butanal
Figure imgf000129_0002
Adapted from the procedure of example 38 using the product of example 158.
1H NMR (300 MHz, DMSO-d6) δ 1.30 (d, J= 6.6 Hz, 3H), 3.43-3.55 (m, IH), 4.83- 4.91 (m, IH), 7.16 (t, J= 9 Hz, 2H), 7.33-7.43 (m, 2H), 9.36 (d, J= 3.6 Hz, IH)
Example 160: Preparation of S-3-(4-fluorophenyl)-l-oxobutan-2-yl-6-(benzyIoxy) l-(2-((2S, 6R)-2, 6- dimethylmorpholino)-2-oxoethyl)-5-oxo-l,5-dihydroimidazo [l,2-a]pyrimidine-7-carbothioate
Figure imgf000129_0003
Adapted from the procedure of example 39 using the product of example 159.
Example 161: Preparation of 6-(benzyloxy)-l-(2-((2S,6R)-2,6-dimethyl morpholino)-2-oxoethyl)-7-(5-(l-(4-fluorophenyl)ethyl)thiazol-2-yl)imidazo[l,2- a]pyrimidin-5(lH)-one
Figure imgf000130_0001
Adapted from the procedure of example 40 using the product of example 160.
1H NMR (300 MHz, DMS(W5) δ 1.09 (d, J= 6.0 Hz, 3H), 1.15 (d, J= 6.0 Hz, 3H),
1.66 (d, J= 6.9 Hz, 3H), 2.25-2.39 (m, IH), 2.73-2.87 (m, IH), 3.37-3.51 (m, IH), 3.53-
3.67 (m, IH), 3.94 (d, J= 12.3 Hz, IH), 4.14 (d, J= 12.6 Hz, IH), 4.48-4.60 (m, IH), 4.99 (d, J= 17.7 Hz, IH), 5.07 (s, 2H), 5.21 (d, J= 16.8 Hz, IH), 7.17 (t, J= 8.7 Hz,
2H), 7.27-7.41 (m, 5H), 7.43-7.53 (m, 2H), 7.54-7.61 (m, IH), 7.66-7.74 (m, IH), 7.81- 7.89 (m, IH)
MS (ESI+) m/z 602 (M+ 1)
Example 162: Preparation of l-(2-((2S,6R)-2,6-dimethylmorpholino)-2- oxoethyl)- 7-(5-(l-(4-fluorophenyl)ethyl)thiazol-2-yl)-6-nydroxyimidazo[l,2-a]pyrimidin- 5(lH)-one
Figure imgf000130_0002
Adapted from the procedure of example 8.5 of PCT/AU2007/001980 using the product of example 161. 1H NMR (300 MHz, DMSO-/) δ 1.09 (d, J= 6.0 Hz, 3H), 1.15 (d, J= 6.1 Hz, 3H), 1.69 (d, J= 7.2 Hz, 3H), 2.26-2.38 (m, IH), 2.75-2.86 (m, IH), 3.37-3.49 (m, IH), 3.53- 3.66 (m, IH), 3.94 (d, J= 12.9 Hz, IH), 4.14 (d, J= 12.6 Hz, IH), 4.55-4.65 (m, IH), 4.91 (d, J= 17.1 Hz, IH), 5.12 (d, J= 16.8 Hz, IH), 7.17 (t, J= 8.7 Hz, 2H), 7.35-7.43 (m, 2H), 7.51 (d, J= 2.7 Hz, IH), 7.63 (d, J= 2.7 Hz, IH), 7.92 (m, IH), 10.85 (s, IH)
MS (ESI+) m/z 534 (M+23)
HPLC 99.6 %
Example 163: Preparation of 2-((2-(6-(benzyloxy)-l-(2-((2S,6R)-2,6-dimethyI morpholino)-2-oxoethyl)-5-oxo-l,5-dihydroimidazo[l,2-a]pyrimidin-7-yl)thiazol-5- yl)methyl)-5-fluorobenzonitrile
Figure imgf000131_0001
To a solution of the product of example 117 (15mg, 0.024mmol) in DMF (0.5 ml), POCl3 (0.1ml) was added drop-wise. The mixture was stirred at room temperature for 20 hours, after which water was added, and then extracted with CH2Cl2. The extracts were combined, washed with brine, and then dried over sodium sulfate. The product was purified by column chromatography (CH2Cl2/EA/Me0H=8/2/l) to give the desired product (6mg, 40 %yield).
1H NMR (300 MHz, DMSO-/) δ 1.08 (d, J= 6.0 Hz, 3H), 1.15 (d, J= 6.3 Hz, 3H), 2.25-2.39 (m, IH), 2.70-2.91 (m, IH), 3.37-3.50 (m, IH), 3.52-3.65 (m, IH), 3.89-3.99 (m, IH), 4.08-4.19 (m, IH), 4.46 (s, 2H), 4.99 (d, J= 16.2 Hz, IH), 5.08 (s, 2H), 5.21 (d, J= 16.5 Hz, IH), 7.26-7.39 (m, 3H), 7.43-7.53 (m, 2H), 1.55-1.1 A (m, 4H), 7.83- 7.92 (m, 2H)
MS (ESI+) m/z 613 (M+l), 635 (M+23) Example 164: Preparation of 2-((2-(l-(2-((2S,6R)-2,6-dimethylmorpholino) -2- oxoethyl)-6-hydroxy-5-oxo-l,5-dihydroimidazo[l,2-a]pyrimidin-7-yl)thiazol-5- yl)methyl)-5-fluorobenzonitrile
Figure imgf000132_0001
Adapted from the procedure of example 8.5 of PCT/AU2007/001980 using the product of example 163.
1H NMR (300 MHz, DMSO-/) δ 1.08 (d, J= 6.4 Hz, 3H), 1.15 (d, J= 6.3 Hz, 3H), 2.25-2.39 (m, IH), 2.74-2.86 (m, IH), 3.37-3.47 (m, IH), 3.53-3.65 (m, IH), 3.95 (d, J= 13.2 Hz, IH), 4.14 (d, J= 12.5 Hz,, IH), 4.50 (s, 2H), 4.87-5.00 (d, J= 17.1 Hz, IH), 5.07-5.19 (d, J= 16.8 Hz, IH), 7.52 (d, J= 2.7 Hz, IH), 7.56-7.70 (m, 3H), 7.85-7.95 (m, 2H), 10.73 (s, IH)
MS (ESO m/z 521 (M-I)
HPLC 94.3 %
Example 165: Preparation of 3-(4-fluoro-2-methylsulfanyI- phenyl)- propionaldehyde
To a solution of 3-(4-fluoro-2-methylsulfanyl-phenyl)-propionic acid methyl ester (1 g, 4.3 mmol) in dry toluene was added DIBAL-H (5.2 ml in toluene, IN) drop-wise at -78 0C. After stirring at this temperature for Ih, methanol (5 ml) was added dropwise to quench the reaction. The mixture was warmed to room temperature and diluted with EA. The mixture was washed with brine, dried and concentrated. The residue was purified by column chromatography to give the titled compound (804 mg, yield 92%)
1H NMR (300 MHz, CDCl3) δ 2.45 (s, 3H), 2.77(t, J= 7.5 Hz, 2H), 2.97(t, J= 7.5 Hz, 2H), 6.72-6.79 (m, IH), 6.84-6.88 (m, IH), 7.06-7.12 (m, IH), 9.81 (d, J=0.9Hz, IH)
Example 166: Preparation of 2-bromo-3-(4-fluoro-2-methyIsulfanyl-pheny.)- propionaldhyde
Figure imgf000133_0001
Adapted from the procedure of example 38 using the product of example 165.
Example 167: Preparation of 6-Benzyloxy-l-[2-(2,6-dimethyl-morpholin-4 -yl)-2- oxo-ethyl]-5- oxo-l,5-dihydro-imidazo[l,2-a]pyrimidine-7-carbothioic acid S-[l-(4- fluoro-2- methyIsulfanyl-benzyl)-2-oxo-ethyl] ester
Figure imgf000133_0002
Adapted from the procedure of example 39 using the product of example 166.
MS (ESI+) m/z 653 (M+ 1) Example 168: Preparation of 6-Benzyloxy-l-[2-(2,6-dimethyl-morpholin-4-yl) -2- oxo-ethyl]-7-[5-(4-fluoro-2-methylsulfanyI-benzyl)-thiazoI-2-yll-lH-imidazo[l,2- a] py rimidin-5-one
Figure imgf000134_0001
Adapted from the procedure of example 40 using the product of example 167.
1H NMR (300 MHz, DMSO-/) δ 1.08 (d, J= 6.3 Hz, 3H), 1.16 (d, J= 6.0 Hz, 3H), 2.33 (t, J= 11.4, IH), 2.50 (s, 3H), 2.80 (t, J= 11.1 Hz, IH), 3.41-3.47 (m, IH), 3.57- 3.63 (m, IH), 3.94 (d, J= 12.6 Hz, IH), 4.14 (d, J= 12.9 Hz, IH), 4.25 (s, 2H), 4.96 (d, J= 16.8 Hz, IH), 5.06 (s, 2H), 5.20 (d, J= 17.1 Hz, IH), 6.95-7.02 (m, IH), 7.11-7.15 (m, IH), 7.31-7.37 (m, 4H), 7.48-7.52 (m, 2H), 7.58 (d, J= 2.7 Hz, IH), 7.70 (d, J= 2.7 Hz, IH), 7.82 (s, IH).
MS (ESI+) m/z 634 (M+ 1 )
Example 169: Preparation of 6-Benzyloxy-l-[2-(2,6-dimethyl-morpholin -4-yl)-2- oxo-ethyl]-7-[5-(4-fluoro-2-methanesulfinyl-benzyl)-thiazol-2-yl]-lH-imidazo[l,2- a] py rimidin-5-one
Figure imgf000134_0002
The mixture of the product of example 168 (160 mg, 0.25 mmol), H2O2 (30%, ImI) and HOAc (5 ml) was stirred at room temperature for 3h. H2O (6 ml) was added and then extracted with ethyl acetate. The organic layer was washed with H2O, dried and concentrated. The residue was purified by column chromatography (ethyl acetate) to give the titled compound (170 mg, 100% yield) 1H NMR (300 MHz, DMSO-d6) δ 1.07 (d, J= 6.3 Hz, 3H), 1.13 (d, J= 6.0 Hz, 3H), 2.26-2.35 (m, IH), 2.62 (s, 3H), 2.70-2.87 (m, IH), 3.39-3.44 (m, IH), 3.55-3.57 (m, IH), 3.89-3.95 (m, IH), 4.08-4.13 (m, IH), 4.34 (s, 2H), 4.96 (d, J= 17.5 Hz, IH), 5.06 (s, 2H), 5.15 (d, J= 16.5 Hz, IH), 7.23-7.32 (m, 3H), 7.35-7.41 (m, IH), 7.44-7.47 (m, 3H), 7.55-7.57 (d, J= 2.7 Hz, IH), 7.61-7.65 (m, IH), 7.68-7.70 (d, J= 2.7 Hz, IH), 7.82 (s, IH).
MS (ESI+) m/z 672 (M+23 )
Example 170: Preparation of l-[2-(2,6-Dimethyl-morpholin-4 -yl)-2-oxo-ethyl]-7- [5- 4-fluoro- 2-methanesulfinyl-benzyl)-thiazol-2-yl]-6- hydroxy-lH-imidazo[l,2- a]pyrimidin-5-one
Figure imgf000135_0001
Adapted from the procedure of example 8.5 of PCT/AU2007/001980 using the product of example 169.
1H NMR (300 MHz, DMSO-d6) δ 1.06 (d, J= 6.3 Hz, 3H), 1.12 (d, J= 5.9 Hz, 3H), 2.27-2.35 (m, IH), 2.68 (s, 3H), 2.75-2.82 (m, IH), 3.38-3.43 (m, IH), 3.55-3.57 (m, IH), 3.91-3.96 (m, IH), 4.08-4.13 (m, IH), 4.41 (s, 2H), 4.93 (d, J= 16.8 Hz, IH), 5.12 (d, J= 16.2 Hz, IH), 7.39-7.51 (m, 3H), 7.62-7.67 (m, 2H), 7.89 (s, IH), 10.76 (s, IH).
MS (ESI+) m/z 582 (M+23 )
Example 171: Preparation of Acetic acid l-[2-(2,6-dimethyl-morpholin-4-yl) -2- oxo-ethyI]-7-[5-(4-fluoro-2-methanesulfinyI-benzyl)-thiazol-2-yl]-5-oxo-l,5- dihydro-imidazo[l,2-a]pyrimidin-6-yl ester
Figure imgf000136_0001
The product of example 168 was subjected to deprotection as per example 8.5 of PCT/AU2007/001980. The crude product (70 mg, contains MeOH) was mixed with Et3N (0.1 ml) and 4-dimethylaminopyridine (30 mg) in 5ml dichloromethane. To this solution was added acetyl chloride (0.1 ml). The mixture was stirred at room temperature for 2 hours, and then poured into H2O and dichloromethane. The organic layer was washed with H2O, dried and concentrated. The residue was purified by column chromatography to give the titled compound (37mg, 50% yield)
1H NMR (300 MHz, CDCl3) δ 1.20 (d, J- 5.7 Hz, 3H), 1.21 (d, J- 5.7 Hz, 3H), 2.41- 2.46 (m, IH), 2.46 (s, 3H), 2.50 (s, 3H), 2.93-3.02 (t, J= 11.7 Hz, IH), 3.52-3.65 (m, 2H), 3.81-3.88 (m, IH), 4.22 (s, 2H), 4.44 (d, J= 12.6 Hz, IH), 4.88-5.11 (m, 2H), 6.78-6.85 (m, IH), 6.90-6.95 (m, IH), 7.10-7.17 (m, 2H), 7.60 (d, J= 2.7 Hz, IH), 7.70 (s, IH).
Example 172: preparation of l-[2-(2,6-Dimethyl-morpholin-4- yl)-2-oxo-ethyl]-7- [5-(4-fluoro-2-methylsulfanyl-benzyl)-thiazol-2-yl]-6-hydroxy-lH-imidazo[l,2- a] pyrimidin-5-one
Figure imgf000136_0002
To a solution of the product of example 171 (38 mg, 0.06 mmol) in MeOH (5 ml) was added K2CO3 (20 mg, 0.14 mmol) and then the mixture was stirred at room temperature for 2 hours. The mixture was poured into water and extracted with dichloromethane. The organic layers were dried and concentrated. The resulting solids were collected and washed with cold MeOH (2-3 ml) to give the title compound (15 mg, yield 42%).
1H NMR (300 MHz, CDCl3) δ 1.19 (d, J= 6.3 Hz, 3H), 1.21 (d, J= 5.7 Hz, 3H), 2.37- 2.45 (m, IH), 2.47 (s, 3H), 2.90-2.99 (m, IH), 3.52-3.60 (m, 2H), 3.80-3.84 (d, J= 12.6Hz, IH), 4.24 (s, 2H), 4.36 (d, J= 13.8 Hz, IH), 4.78 (d, J= 15.9 Hz, IH), 4.93 (d, J= 15.9 Hz, IH), 6.79-6.85 (m, IH), 6.86-6.95 (m, IH), 7.07 (d, J= 2.4 Hz, IH), 7.14- 7.19 (m, IH), 7.57 (d, J= 2.4 Hz, IH), 7.63 (s, IH), 11.25 (s, IH).
MS (ESI-) m/z 542 (M-I )
HPLC 92.0 %
Example 173: preparation of 6-Acetoxy-l-[2-(3,5-dimethyl-piperidin- l-yl)-2-oxo- ethyl]-5- oxo-l,5-dihydro-imidazo[l,2-a]pyrimidine-7-carboxyIic acid methyl ester
Figure imgf000137_0001
Adapted from the procedure of example 33.
1H NMR (300 MHz, CDCl3) δ 0.92 (J= 6.6 Hz, 3H), 0.97 (J= 6.6 Hz, 3H), 1.27 (t, J= 6.9 Hz, IH), 1.60-1.67 (m, 2H), 1.86-1.91 (m, IH), 2.11 (t, J= 11.7 Hz, IH), 2.38 (s, 3H), 2.66 (t, J= 12 Hz, IH), 3.76-3.82 (m, IH), 3.94 (s, 3H), 4.49-4.55 (m, IH) , 5.02 (s, 2H), 7.25 (d, J= 3.0 Hz, IH), 7.66 (d, J= 2.7 Hz, IH). Example 174: preparation of l-[2-(3,5-Dimethyl-piperidin-l-yl)-2-oxo- ethyl]-6- hydroxy-5- oxo-l,5-dihydro-imidazo[l,2-a]pyrimidine-7-carboxylic acid methyl ester
Figure imgf000138_0001
Adapted from the procedure of example 172 using the product of example 173.
The titled product was used directly in next step.
Example 175: preparation of 6-Benzyloxy-l-[2-(3,5-dimethyl-piperidin-l-yl) -2- oxo-ethyl]-5- oxo-l,5-dihydro-imidazo[l,2-a]pyrimidine-7-carboxylic acid methyl ester
Figure imgf000138_0002
Adapted from the procedure of example 34 using the product of example 174.
The titled product was used directly in next step.
Example 176: preparation of 6-Benzyloxy-l-[2-(2,6-dimethyl-morpholin-4- yl)-2- OXO- ethyl]-5-oxo-l,5-dihydro-imidazo[l,2-a]pyrimidine-7-carboxy lie acid
Figure imgf000139_0001
Adapted from the procedure of example 35 using the product of example 175.
1H NMR (300 MHz, CDCl3) δ 0.75-0.87 (m, IH), 0.84 (J= 6.9 Hz, 3H), 0.91 (J- 6.3 Hz, 3H), 1.43-1.49 (m, IH), 1.66-1.76 (m, IH), 1.75-1.80 (m, IH), 2.10 (t, J= 12 Hz, IH), 2.59 (t, J= 12 Hz, IH), 3.85 (d, J= 12 Hz, IH), 4.26 (d, J= 10.5 Hz, IH), , 5.02 (s, 2H), 5.06 (d, J= 16.5 Hz, IH), 5.15 (d, J= 16.5 Hz, IH), 7.33-7.42 (m, 3H), 7.45-7.48 (m, 2H), 7.60 (d, J= 2.7 Hz, IH), 7.75 (d, J= 2.4 Hz, IH), 13.64 (s, IH).
MS (ESI") m/z 437(M-I)
Example 177: preparation of 6-Benzyloxy-l-[2-(2,6-dimethyl-morpholin -4-yl)-2- oxo-ethyl] - 5-oxo-l ,5-dihy dro-imidazo [1 ,2-a] pyrimidine-7-carbothioic acid
Figure imgf000139_0002
Adapted from the procedure of example 36 using the product of example 176.
The titled product was used directly in next step. Example 178: preparation of 6-BenzyIoxy-l-[2-(3,5-dimethyl-piperidin-l-yl)-2 - oxo-ethyl]-5- oxo-l,5-dihydro-imidazo[l,2-a]pyrimidine-7-carbothioic acid S-[2-(4- fluoro-pheny I)-I- formyl-ethyl] ester
Figure imgf000140_0001
Adapted from the procedure of example 39 using the product of example 177 and the product of example 72.
The titled product was used directly in next step.
Example 179: preparation of 6-BenzyIoxy-l-[2-(3,5-dimethyl-piperidin-l- yl)-2- oxo-ethyl] -7- [5-(4-fluoro-benzy.)-thiazol-2-y I] -lH-imidazo [1 ,2-a] py rimidin-5-one
Figure imgf000140_0002
Adapted from the procedure of example 40 using the product of example 178.
1H NMR (300 MHz, CDCl3) δ 0.75-0.92 (m, 7H), 1.56-1.63 (m, 2H), 1.83-1.80 (d, J= 13.8 Hz, IH), 2.05 (t, J= 12.3 Hz, IH), 2.60 (t, J= 13,5 Hz, IH), 3.76-3.81 (m, IH), 4.15 (s, 2H), 4.48 (d, J= 11.7 Hz, IH), 5.05 (s, 2H), 5.25 (s, 2H), 6.96-7.03 (m, 2H), 7.15-7.20 (m, 3H), 7.27-7.30 (m, 3H), 7.46-7.48 (m, 2H),7.61 (d, J= 2.7 Hz, IH), 7.73 (s, IH)
MS (ESI+) m/z 586 (M+l) Example 180: Preparation of l-[2-(3,5-Dimethyl-piperidin-l-yl)-2-oxo-ethyl]-7- [5- (4-fluoro-benzyl)-thiazol-2-yl]-6-hydroxy-lH-imidazo[l,2-alpyrimidin-5-one
Figure imgf000141_0001
Adapted from the procedure of example 8.5 of PCT/AU2007/001980 using the product of example 179.
1H NMR (300 MHz, CDCl3) δ 0.90-0.932 (m, 7H), 1.55-1.88 (m, 3H), 2.10 (t, J= 13.2Hz, IH), 2.65 (t, J= 12.6 Hz, IH), 3.84-3.90 (m, IH), 4.22 (s, 2H), 4.49-4.54 (m, IH), 5.05 (s, 2H), 4.87-4.92 (m, 2H), 7.03-7.11 (m, 3H), 7.23-7.26 (m, 2H), 7.62 (s, IHD), 7.67 (m, IH).
MS (ESI") m/z 494 (M-I)
The following compounds were also prepared by the methods set out in this application:
Example 181 : 6-Hydroxy-3-morpholin-4-ylmethyl-5-oxo-l-(2-oxo-2-piperidin-l- yl-ethyI)-l,5-dihydro-imidazo[l,2-a]pyrimidine-7-carboxylic acid 3,4-dichloro- benzylamide
Figure imgf000142_0001
1H NMR (300 MHz, DMSO-d6): δ 11.3 (IH, s), 9.426 (IH, m), 7.58 (2H, m), 7.31 (2H, m), 5.056 (2H, s), 4.52 (2H, d, J = 6.6 Hz), 4.025 (2H,s), 3.57 (4H, m), 3.43 (4H, m), 1.58 (4H, m), 1.44 (2H, m).
Example 182: l-[2-((2S,6S)-2,6-Dimethyl-morpholin-4-yl)-2-oxo-ethyl]-7-[5-(4- fluoro-benzyl)-thiazol-2-yl]-6-hydroxy-lH-imidazo[l,2-a]pyrimidin-5-one
Figure imgf000142_0002
1H NMR (300 MHz, DMSO-d6): δ: 10.81 (IH, m), 7.91 (IH, s), 7.62 (IH, d, J = 3 Hz), 7.5 (IH, d, 2.7 Hz), 7.37 (2H, m), 7.16 (2H, m), 5.13 (IH, d, J = 16.5 Hz), 4.92 (IH, d,J = 17.1 Hz), 4.288 (2H, s), 4.13 (IH, m), 3.94 (IH, m), 3.43 (IH, m), 3.27 (IH, m), 2.8 (IH, m), 2.28 (IH, m), 1.10 (6H, m). Example 183 : 7- [5-(4-Fluoro-benzyI)-thiazol-2-yl] -6-hy droxy-l-(l -methyI-2-oxo- py rrolidin-3-yl)-l H-imidazo [1 ,2-a] pyrimidin-5-one
Figure imgf000143_0001
1H NMR (300 MHz, DMSO-d6): δ: 10.78 (lH,s), 7.9 91H,s), 7.64 (2H, s), 7.38 (2H, m), 7.17 (2H, m), 5.24 (IH, t, J = 9.3 Hz), 4.278 (2H,s ), 3.5 (2H, m), 2.81 (3H, s), 2.54 (IH, m), 2.32 (IH, m).
Example 184: l-[2-(2,6-Dimethyl-morphoIin-4-yl)-l-methyl-2-oxo-ethyl]-7-[5-(4- fluoro-benzyI)-thiazol-2-yl]-6-hydroxy-lH-imidazo[l,2-a]pyrimidin-5-one
Figure imgf000143_0002
1H NMR (SOO MHz, DMSO-d6): δ: 10.78 (IH, s)7.92 91H, m), 7.72 (IH, m), 7.63 (IH, m), 7.36 (2H, m), 7.16 (2H, m), 5.68 (2H, m), 4.289 (2H, s), 4.11 (IH. d, J = 13.5 Hz), 3.42 (IH, m), 3.2 (IH, m), 2.8 (IH, m), 2.3 (IH, m), 1.59 (3H, m), 1.05 (H, m). Example 185: l-[2-(2-Aza-bicyclo[2.2.1]hept-2-yl)-2-oxo-ethyl]-7-[5-(4-fluoro- benzyl)-thiazol-2-yl]-6-hydroxy-lH-imidazo[l,2-a]pyrimidin-5-one
Figure imgf000144_0001
1H NMR (300 MHz, DMSO-d6): δ: 10.8 (Ih, s, br), 7.9 (IH, br), 7.6 (2H, m), 7.36 (2H, m), 7.17 (2H, m), 4.75 (2H, m), 4.27 (3H, m), 3.34 (IH, m), 2.99 (IH, m), 1.8 (6H, m).
Example 186: l-[2-((2R,6R)-2,6-Dimethyl-morphoIin-4-yl)-2-oxo-ethyl]-3-(l,l- dioxo-lIambda*6*-isothiazolidin-2-yl)-6-hydroxy-5-oxo-l,5-dihydro-imidazo[l,2- a] py rimidine-7-carboxy lie acid 2-dimethylsulfamoyl-4-fluoro-benzy lamide
Figure imgf000144_0002
1 - [2-((2R,6R)-2,6-Dimethyl-morpholin-4-yl)-2-oxo-ethyl]-3 -(1,1 -dioxo- 1 lambda* 6* - isothiazolidin-2-yl)-6-hydroxy-5-oxo-l,5-dihydro-imidazo[l,2-a]pyrimidine-7- carboxylic acid methyl ester (30 mg, 0.062 mmol) was dissolved in MeOH (1 mL) and 2-aminomethyl-5-fluoro-N,N-dimethyl-benzenesulfonamide (22 mg, 0.093 mmol) was added. The reaction was heated at reflux for 24 hours then filtered hot and the filtrate concentrated. The product was recrystalised from methanol and ether and isolated (17 mg, 43 % yield) as a pale yellow solid.
1H NMR (300 MHz, CDCl3): δ 9.29 (IH, t, J - 6.6 Hz, NHCH2), 7.66 (IH, s, Ar-CH), 7.61 (IH, dd, J = 8.7, 2.4 Hz, Ar-CH), 7.53 (2H, m, Ar-CH), 5.13 (IH, d, J = 17.1 Hz, OCHCH3), 5.03 (IH, d, J = 16.2 Hz, OCHCH3), 4.82 (2H, m, NHCH2), 4.15 (IH, d, J = 12.3 Hz, NCH2CO), 3.86-3.75 (3H, m, 1 x NCH2C-O, NCH2), 3.60 (IH, m, NCH2),3.48 (IH, m, NCH2), 3.43 (2H, t, J = 7.2 Hz, NCH2), 2.82 (6H, s, N[CEb]2), 2.44 (2H, t, J - 7.2 Hz, SO2CH2), 2.33 (2H, dd, J = 11.4, 12.0 Hz, CH2), 1.12 (3H, d, J = 7.2 Hz, OCHCH3), 1.08 (3H, s, J = 6.0 Hz, OCHCH3).
Example 187: l-[2-(3,5-Dimethyl-piperidin-l-yl)-2-oxo-ethyl]-3-(l,l-dioxo- llambda*6*-isothiazolidin-2-yl)-6-hydroxy-5-oxo-l,5-dihydro-imidazo[l,2- a]pyrimidine-7-carboxylic acid 2-dimethylsulfamoyI-4-fluoro-benzylamide
Figure imgf000145_0001
synthetic scheme
Figure imgf000145_0002
6-Benzyloxy-l-tert-butoxycarbonylmethyl-3-(l,l-dioxo-llambda*6*-isothiazolidin-2- l)-5-oxo-l,5-dihydro-imidazo[l,2-a]pyrimidine-7-carboxylic acid methyl ester (266mg, 0.5 mmol) was stirred with dichloromethane (ImI) and trifluoroacetice acid (2ml) for 4 hours at room temperature. The reaction mixture was evaporated to dryness and the residue was dissolved in dimethylformamide (2.5ml). HBTU (474 mg, 1.25 mmol) and 3,5-dimethylpiperidine (226 mg, 2 mmol) were added. The resulting mixture was stirred overnight and room temperature, and then evaporated to dryness. The residue was dissolved in methanol (20 ml), and 2-aminomethyl-5-fluoro-N,N-dimethyl- benzenesulfonamide (580 mg, 2.5 mmol) was added. The reaction was heated at reflux for 6 days, then evaporated to dryness. The residue was taken up in dichloromethane (50ml) and IM HCl solution (150ml). The aqueous phase was extracted with dichloromethane (3x 50ml). The combined organic phase was dried over MgSO4 and evaporated to dryness. The residue was purified on preparative HPLC to afford the title product as colorless amorphous solid (185mg, 54.2% overall yield.)
1H NMR (300 MHz, DMSO-d6): δ 11.3 (IH, broad; -OH), 9.26 (IH, t, J = 6.32 Hz, NHCH2), 7.65 (IH, s, Ar-CH), 7.6 (IH, dd, J = 9.15, 1.92 Hz, Ar-CH), 7.53 (2H, m, Ar-CH), 5.09 (IH, d, J = 16.9 Hz, NCH2CO), 5.06 (IH, d, J = 16.9 Hz, NCH2CO), 4.82 (2H, t, J = 6.53 Hz, NHCH2), 4.25 (IH, m), 3.43 (2H, dd, J = 7.31, 6.85 Hz), 2.81 (6H, s), 2.58 (IH, m); 2.44 (2H, m), 2.07 (IH, dd, J = 12.33, 11.88 Hz), 1.72 (2H, m), 1.44 (IH, br), 0.85 (6H, m).
Example 188: 3-(l,l-Dioxo-llambda*6*-isothiazolidin-2-yl)-6-hydroxy-5-oxo-l- (2-oxo-2-piperidin-l-yI-ethyl)-l,5-dihydro-imidazo[l,2-a]pyrimidine-7-carboxylic acid 2-dimethylsuIfamoyl-4-fluoro-benzylamide
Figure imgf000146_0001
Following the same procedure for Example 187 but using piperidine, the title product was obtained in 35.8% yield as a yellowish amorphous solid.
1H NMR (300 MHz, DMSO-d6): δ 11.3 (IH, br), 9.3 (IH, dd, J = 6.8, 6.3 Hz), 7.658 (IH, s), 7.58 (3H, m), 5.06 (2H, br), 4.82 (2H, m), 4.52 (2H, m), 3.77 (2H, m), 3.43 (4H, m), 2.82 (3H, s), 2.76 (3 H, s), 2.44 (2H, m), 1.59 (2H, br), 1.45 (2H, br). Example 189: 3-(l,l-Dioxo-llambda*6*-isothiazolidin-2-yI)-6-hydroxy-l-[2-(2- methyl-piperidin-l-yI)-2-oxo-ethyl]-5-oxo-l,5-dihydro-imidazo[l,2-a]pyrimidine- 7-carboxylic acid 2-dimethylsulfamoyl-4-fluoro-benzylamide
Figure imgf000147_0001
Following the same procedure for Example 188 but using 2-methylpiperidine, the title product was obtained in 22.5% yield as a yellowish amorphous solid.
1H NMR (300 MHz, DMSOd3): δ: 11.316 (IH, s). 9.24 (IH, s), 7.6 (6H, m), 4.82 (2H, m), 4.52 (2H, m), 3.77 (2H, m), 3.42 (2H, m), 2.81 (3H, s), 2.76 (3H, s), 2.73 (IH, s), 1.60 (5H, m), 1.30 (3 H, m), 1.10 (2H, m).
Example 190: l-[2-(3,5-DimethyI-piperidin-l-yI)-2-oxo-ethyl]-3-(l,l-dioxo- llambda*6*-isothiazolidin-2-yl)-6-hydroxy-5-oxo-l,5-dihydro-imidazo[l,2- a]pyrimidine-7-carboxylic acid 3,4-dichIoro-benzylamide
Figure imgf000147_0002
Following the same procedure for Example 187 but using 3,4-dichlorobenzylamine, the title product was obtained in 55% yield as a yellowish amorphous solid.
1H NMR (300 MHz, DMSO-d6): δ 11.4 (IH, broad; -OH), 9.396 (IH, t, J - 6.39 Hz, NHCH2), 7.63 (IH, s, Ar-CH), 7.56 (2H, m), 7.5 (IH, m, Ar-CH), ), 7.3 (IH, m, Ar- CH), 5.09 (2H, s), 4.5 (2H, m), 4.3 (lH,m), 3.76 (2H, m), 3.55 (br), 3.42 (2H, m), 2.43 (2H, m); 2.05 (IH, dd, J = 12.33, 11.88 Hz), 1.72 (2H, m), 1.4 (IH, br), 0.85 (6H, m).
Example 191 : l-[2-(3,5-Dimethyl-piperidin-l-yl)-2-oxo-ethyl]-6-hydroxy-3- methylsulfanylmethyl-S-oxo-ljS-dihydro-imidazofl^-alpyriinidine-T-carboxylic acid 3,4-dichIoro-benzyIamide
Figure imgf000148_0001
Step 1:
Figure imgf000148_0002
6-Acetoxy-5-oxo-l,5-dihydro-imidazo[l,2-a]pyrimidine-7-carboxylic acid methyl ester (3g, 11.95mmol) was mixed with K2CO3 (3.3g, 23.9 mmol), 18-crown-6 ether (0.3g) and 2-Bromo-l-(3,5-dimethyl-piperidin-l-yl)-ethanone (4.2g, 17.93 mmol) in acetonitrile (60ml). The resulting mixture was stirred overnight at room temperature.
The solvents were removed, and the residue taken up in ethylacetate; washed with water and IN HCl. After drying over MgSO4, the organic phase was evaporated to dryness and the residue was purified on silica gel to give 6-acetoxy-l-[2-(3,5-dimethyl- piperidin- 1 -yl)-2-oxo-ethyl]-5-oxo- 1 ,5-dihydro-imidazo[ 1 ,2-a]pyrimidine-7-carboxylic acid methyl ester (2.92g, 60.5% yield). 1H NMR (300 MHz, DMSO-d6): 7.77 (IH, d, J = 2.74 Hz, Ar-CH), 7.67 (IH, d, J = 2.74 Hz, Ar-CH), 5.15 81H, d, J - 16.9 Hz), 5.13 (IH, d, J = 16.9 Hz), 4.25 (IH, m), 3.85 (IH, m), 3.82 (3H, s), 2.59 (IH, dd, J = 13.25, 11.88 Hz), 2.25 (3H, s), 2.09 (IH, dd, J = 13.35, 11.88 Hz), 1.78 (IH, m), 1.69 (IH, m), 1.48 91H, m), 0.88 (6H, m).
Step 2
Figure imgf000149_0001
DMSO (5.96ml, 84.1mmol, 10 equivalents) was dissolved in 1,2-dichloroethane (35ml) and the solution was cooled to 0°C under nitrogen atmosphere. Trifluoroacetic acid anhydride (11.69ml, 84.1mmol, 10 equivalents) was added dropwise. The resulting solution was stirred at 0°C for 1 hour then 6-ccetoxy-l-[2-(3,5-dimethyl-piperidin-l- yl)-2-oxo-ethyl]-5-oxo- 1 ,5-dihydro-imidazo[l ,2-a]pyrimidine-7-carboxylic acid methyl ester (from step 1; 3.4g, 8.41 mmol) ZnCl2 (2.29g, 16.8 mmol, 2 equivalent) were added, and the reaction mixture was stirred at 800C for four hours. The mixture was poured into brine (200ml) and water (200ml) and extracted with dichloromethane. After drying over MgSO4, the solvent was removed, and the residue was purified on silica gel to afford the product (1.7g, 47.9% yield).
1H NMR (300 MHz, CDCl3): 9.75 (IH, br), 6.98 (IH, s), 4.86 (2H, s), 4.50 (IH, m), 4.28 (2H, s), 4.00 (3H, s), 3.82 (IH, m), 2.63 (IH, dd, J = 12.79, 11.88 Hz), 2.15 (3H, s), 2.09 (IH, dd, J = 12.79, 11.88 Hz), 1.88 (IH, m), 1.7 (4H, m), 0.95 (6H, m). Step 3
Figure imgf000150_0001
Following the same procedure for Example 49 but using l-[2-(3,5-dimethyl-piperidin- l-yl)-2-oxo-ethyl]-6-hydroxy-3-methylsulfanylmethyl-5-oxo-l,5-dihydro-imidazo[l,2- a]pyrimidine-7-carboxylic acid methyl ester from step 2 and 3,4-dichlorobenzylamine, the title product was obtained in 76.4% yield as a yellowish amorphous solid.
1H NMR (300 MHz, CDCl3): δ 11.22 (IH, s; -OH), 7.87 (IH, dd, J = 6.39, 5.94 Hz, NHCH2), 7.43 (2H, m, Ar-CH), 7.18 (IH, m), 6.86 (IH, m, Ar-CH), ), 4.76 (2H, s), 4.59 (2H, m), 4.48 (IH, m), 4.28 (2H, s), 3.66 (IH, m), 2.58 (IH, dd, J = 13.25, 11.88 Hz), 2.15 (3H, s), 2.06 (IH, t, J = 12.33 Hz), 1.82 (IH, m). 1.57, (3H, s), 1.52 (3H, m), 0.90 (6H, d, J = 6.39 Hz).
Example 192: l-[2-(3,5-Dimethyl-piperidin-l-yl)-2-oxo-ethyl]-6-hydroxy-3- methylsulfanylmethyl-5-oxo-l,5-dihydro-imidazo[l,2-a]pyriinidine-7-carboxylic acid 2-dimethylsulfamoyl-4-fluoro-benzylamide
Figure imgf000150_0002
Following the same procedure for Example 187 but using l-[2-(3,5-dimethyl-piperidin- l-yl)-2-oxo-ethyl]-6-hydroxy-3-methylsulfanylmethyl-5-oxo-l,5-dihydro-imidazo[l,2- a]pyrimidine-7-carboxylic acid methyl ester Example 191 and 2-aminomethyl-5-fiuoro- N,N-dimethyl-benzenesulfonamide, the title product was obtained in 84.7% yield as a yellowish amorphous solid.
1H NMR (300 MHz, CDCl3): 6 11.18 (IH, s; -OH), 8.73 (IH, j, J = 6.85 Hz, NHCH2), 7.71 (IH, dd, J = 8.68, 5.02 Hz, Ar-CH), 7.57 (IH, dd, J = 8.22, 2.74 Hz), 7.28 (2H, m, Ar-CH), ), 6.92 (IH, s), 4.81 (4H, m), 4.48 (IH, m), 4.26 (2H, s), 3.78 (IH, m), 2.87 (6H, s), 2.68 (IH, dd, J = 13.70, 11.88 Hz), 2.13 (3H, s), 2.10 (IH, t, J = 12.33 Hz), 1.88 (IH, m), 1.59, (7H, br), 0.92 (6H, m).
Example 193: l-[2-(3,5-Dimethyl-piperidin-l-yI)-2-oxo-ethyl]-6-hydroxy-3- methanesulfonylmethyl-5-oxo-l,5-dihydro-imidazo[l,2-a]pyriniidine-7-carboxylic acid 3,4-dichloro-benzylamide
Figure imgf000151_0001
Step 1
MCPBA
Figure imgf000151_0002
Figure imgf000151_0003
l-[2-(3,5-dimethyl-piperidin-l-yl)-2-oxo-ethyl]-6-hydroxy-3-methylsulfanylmethyl-5- oxo-1 ,5-dihydro-imidazo[l ,2-a]pyrimidine-7-carboxylic acid methyl ester from example 54 (0.35g, 0.83 mmol) was dissolved in dichloromethane (10ml) and cooled to O0C. M-Chloroperoxybenzoic acid (0.286g, 2 equivalents) were added. The reaction mixture was stired for 2 hours, then more MCPBA (150mg) was added, and the stirring was continued for one hour. The reaction was quenched with a solution OfNa2S2O3, the aqueous phase was extracted with dichloromethane, dried over MgSO4 and evaporated to dryness to give the product as mixture with m-chlorobenzoic acid (0.7g, treated as 100% yield, contains -50% m-Cl-benzoic acid by NMR).
1H NMR (300 MHz, CDCl3): 6 10 (IH, br; -OH), 7.31 (IH, s), 5.12 (IH, d, J = 15.07 Hz), 5.10 (IH, d, H = 15.07 Hz), 4.93 (2H, s), 4.52 (2H, s), 4.01 (3H, s), 3.78 (2H, m), 3.01 (3H, s), 2.67 (IH, dd, J = 13.7, 11.42 Hz), 2.15 (3H, s), 2.10 (IH, dd, J = 12.33, 11.88 Hz), 1.92 (IH, m), 1.7 (2H, m), 0.98 (3H, d, J = 6.39 Hz), 0.91 (3H, d, J = 6.85 Hz).
Step 2
MeOH, reflux
Figure imgf000152_0002
Figure imgf000152_0001
Following the same procedure for Example 187 but using the methyl ester from step 2 and 3,4-dichlorobenzylamine, the title product was obtained in 41.5% yield as a yellowish amorphous solid.
1H NMR (300 MHz, CDCl3): δ 11.45 (IH, br; -OH), 7.87 (IH, br), 7.44 (2H, m), 7.19 (2H, m, Ar-CH), ), 5.16 (IH, d, J = 15.07 Hz), 5.09 (IH, d, J = 15.07), 4.81 (2H, m), 4.60 (2H, m), 4.44 (2H, s), 3.64 (IH, m), 3.01 (3H, s), 2.6 (IH, t, J = 12.33 Hz), 2.0 (6H, m, br), 1.52 (2H, m), 0.92 (6H, m).
Example 194: l-[2-(3,5-Dimethyl-piperidin-l-yl)-2-oxo-ethyl]-6-hydroxy-3- methanesulfonylmethyl-5-oxo-l,5-dihydro-imidazo[l,2-a]pyrimidine-7-carboxylic acid 2-dimethylsuIfamoyl-4-fluoro-benzylamide
Figure imgf000153_0001
Following the same procedure for Example 187 but using the methyl ester from
Example 55 and 2-aminomethyl-5-fluoro-N,N-dimethyl-benzenesulfonamide, the title product was obtained in 42.5% yield as a colorless amorphous solid.
1H NMR (300 MHz, CDCl3): δ 11.38 (IH, br; -OH), 8.76 (IH, t, J = 6.39 Hz), 7.70 (IH, dd, J = 8.68, 5.02 Hz), 7.59 (IH, m, Ar-CH), 7.3 (IH, m), 7.24 (IH, s), 5.09 (IH, d, J = 15.07 Hz), 5.08 (IH, d, J = 15.07 Hz), 4.90 (IH, d, J = 16.45 Hz), 4.87 (IH, d, J = 16.45 Hz), 4.79 (2H, m), 4.45 (IH, m), 3.7 (IH, m), 2.97 (3H, s), 2.87 (6H, s), 2.72 (IH, dd, J = 12.79, 12.33 Hz), 2.13 (IH, t, J = 12.33 Hz), 1.9 (7H, m, br), 1.6 (IH, m, br), 0.99 (3 H, d, J = 6.396 Hz), 0.91 (3H, d, J = 6.396 Hz).
Example 195: l-[2-((2S,6S)-2,6-Dimethyl-morphoIin-4-yl)-2-oxo-ethyl]-7-[5-(4- fluoro-benzyl)-thiazol-2-yl]-6-hydroxy-lHS-imidazo[l,2-a]pyrimidin-5-one
Figure imgf000153_0002
Adapted the procedures of examples 39-41 using the product of example 36 and 72. 1H NMR (300 MHz, DMSO-d6): δ: 10.81 (IH, m), 7.91 (IH, s), 7.62 (IH, d, J = 3 Hz), 7.5 (IH, d, 2.7 Hz), 7.37 (2H, m), 7.16 (2H, m), 5.13 (IH, d, J = 16.5 Hz), 4.92 (IH, d, J = 17.1 Hz), 4.288 (2H, s), 4.13 (IH, m), 3.94 (IH, m), 3.43 (IH, m), 3.27 (IH, m), 2.8 (IH, m), 2.28 (IH, m), 1.10 (6H, m).
MS (ESI") m/z 498 [M+H]+
3 BIOLOGICAL EXAMPLES
Example 3.1 Activity of selected examples against wild type and mutant integrases and HIV strains
PhenoScreen assay
Monogram Bioscience' PhenoScreen assay allows the evaluation of integrase inhibitors for activity against a variety of HIV variants. The assay uses virus generated from 2 DNA constructs; one containing the HIV LTR, gag and pol regions, as well as a luciferase reporter gene in place of the viral envelope genes, and a second DNA construct containing the amphotrophic murine leukemia virus (A-MLV) envelope gene required to pseudotype virions and render them capable of entry into a target cell. Viruses generated using these constructs by transfection into a producer cell line such as 293T are capable of one-round of infection only. Successful integration events are directly proportional to the levels of luciferase expression 48-72h after infection.
The viral variants chosen by Avexa Ltd. to screen their in-house integration inhibitors against consist of mutations within the viral integrase enzyme known to confer resistance to a number of known integration inhibitors published in the literature. In particular, the viral variants containing the Q148H/G140S double mutation in integrase, and the N155H/E92Q double mutation in integrase, represent two of the more common viruses identified to arise in patients that are failing treatment with Isentress (Raltegravir, MK-0518).
Mutant enzymes:
HIV integrase was mutated within a shuttle vector (pGEMNLHE) containing the majority of the HIV-I gag and pol sequence using site directed mutagenesis to generate integrase sequences that have been published as conferring resistance to published integrase inhibitors. These include, but are not limited to, mutations such as Q148K, Q148H/G140S and N155H/E92Q. The integrase coding region was then subject to PCR and cloned into a bacterial expression vector. The specific introduction of desired mutation(s) was confirmed by sequence analysis. Proteins were expressed, purified and used in strand transfer assays.
Strand transfer assay (enzyme assay):
A strand transfer assay procedure similar to that published (Ovenden et al.
Phytochemistry. 2004 Dec;65(24):3255-9.) is used. Briefly, 400ng of the enzyme, wild type or drug resistant mutant, is mixed with the compound to be tested and incubated with 3OnM substrate DNA. The substrate DNA is designed to mimic HIV DNA termini that has undergone 3 'end processing, and consists of the annealed U5 LTR sequence oligonucleotides tagged with Digoxigenin (DIG; 5'-
ACTGCTAGAGATTTTCCACACTGACTAAAAGGGTC-DIG-S') or biotin (5'-Bio- GACCCTTTTAGTCAGTGTGGAAAATCTCTAGCA-3') so that each substrate has either a DIG or Bio tag on opposite strands. Reactions are carried out for lhr at 37°C. Products generated as a result of strand transfer activity are bound to streptavidin plates and detected using anti-DIG-alkaline phosphatase conjugate and p-nitro phenyl phosphate substrate.
Both the Phenosense assay and the Enzyme assay give substantially the same activity values for any particular compound and enzyme pair. The activity of one compound in one assay can therefore be directly compared to the activity of a second compound in the other assay.
Table 1: Activity of selected examples against wild type and mutant integrases and HIV s
Figure imgf000156_0001
Figure imgf000157_0001
+ indicates value between 0.00 lμM and 0.1 μM
indicates value between lμM and 0.1 μM
indicates value between lμM and lOμM
+ indicates value greater than lOμM a Example 18.3 in International Patent Application No. PCT/AU2007/001980.
b Example 18.2 in International Patent Application No. PCT/AU2007/001980.
On the basis of the results set out in Table 1 above, the compounds of the present invention have superior activity profiles against mutant HIV integrases than their closest analogues in International Patent Application No. PCT/AU2007/001980 in the name of AvexaXtd which are not of the present invention.
Example 3.2
Reporter Viruses:
Infectivity assays using reporter viruses derived from lentiviral vectors capable of a single round of infection were used to determine the activity (EC50) of compounds. The DNA used to generate viruses for infection was the full-length HIV-I genome which had been envelope-deleted. In addition, a reporter gene (the firefly luciferase gene from Photinus pyralis) was cloned into the we/region of the HIV backbone for ease of assay readout. Viruses were generated via liposomal transfection of the lentiviral -derived DNA backbone together with a vesicular stomatitis virus glycoprotein (VSV-G) expression plasmid into 293T cells. Culture supernatants containing VSV-G pseudotyped virions were harvested 64h post transfection, clarified by centrifugation to remove cell debris, and frozen at -700C until use.
Mutant integrase viruses:
HIV integrase was mutated within a shuttle vector (pGEM) containing the majority of the HIV-I gag and pol sequence using site-directed mutagenesis to generate sequences that are known to confer resistance to published integrase inhibitors. These include but are not limited to mutations such as Q148H/G140S (in table # QHGS). The mutated integrase coding region within the shuttle vector was sequence verified, and then exchanged for the wild-type (WT) coding sequence in the reporter virus DNA backbone.
Assay method:
293T cells were plated out at 12000 cells per well in CellView 96-well cell culture plates (Invitrogen) 16h prior to compound addition. Compounds were preincubated with cells for 4h at 370C prior to the addition of virus sufficient to generate approximately 10000 Luciferase light units (as measured by the Victor Wallace luminometer) upon assaying using the Bright-Glo™ reagent (Promega) according to the manufacturer's instructions at 48h post infection. Example 3.2
Reporter Viruses:
Infectivity assays using reporter viruses derived from lentiviral vectors capable of a single round of infection were used to determine the activity (EC50) of compounds. The DNA used to generate viruses for infection was the full-length HIV-I genome which had been envelope-deleted. In addition, a reporter gene (the firefly luciferase gene from Photinus pyralis) was cloned into the we/region of the HIV backbone for ease of assay readout. Viruses were generated via liposomal transfection of the lentiviral-derived DNA backbone together with a vesicular stomatitis virus glycoprotein (VSV-G) expression plasmid into 293T cells. Culture supernatants containing VSV-G pseudotyped virions were harvested 64h post transfection, clarified by centrifugation to remove cell debris, and frozen at -70°C until use.
Mutant integrase viruses:
HIV integrase was mutated within a shuttle vector (pGEM) containing the majority of the HIV-I gag and pol sequence using site-directed mutagenesis to generate sequences that are known to confer resistance to published integrase inhibitors. These include but are not limited to mutations such as Q148H/G140S (in tables 2 and 3 # QHGS), N155H/E92Q (in table 2 # NHEQ), F121Y/T124K (in table 2 FYTK), Y143R (in table 2 # Y143R) and the triple mutant Q148K/G140A/E138A. (in table 2 # QKGAEA). The mutated integrase coding region within the shuttle vector was sequence verified, and then exchanged for the wild-type (WT) coding sequence in the reporter virus DNA backbone.
Assay method:
293T cells were plated out at 12000 cells per well in CellView 96-well cell culture plates (Invitrogen) 16h prior to compound addition. Compounds were preincubated with cells for 4h at 370C prior to the addition of virus sufficient to generate approximately 10000 Luciferase light units (as measured by the Victor Wallace luminometer) upon assaying using the Bright-Glo™ reagent (Promega) according to the manufacturer's instructions at 48h post infection. Table 2: Assay results for Example 3.2
Figure imgf000160_0001
Figure imgf000161_0001
The compounds of the present invention show activity against the triple mutant QKGAEA which is resistant to many published integrase inhibitors.
EC50 InM-IOOnM = +++
EC50 10OnM to IuM = ++
EC50 >luM = +
ND: Not determined
Table 3: Assay results for Example 3.2 against the QHGS mutant
Figure imgf000161_0002
Example Molecular structure EC50
Example 182 +++
Example 75 ++
Example 104
Example 126
Example 138
Figure imgf000162_0001
Figure imgf000163_0001
Example Molecular structure EC50
Example 185 +
Example 181
Example 187
Example 186 +++
Figure imgf000164_0001
Figure imgf000165_0001
Example Molecular structure EC50
Example 192 +-H-
Example 193 +++
Example 194 +++
Figure imgf000166_0001
EC50 <500 nM = +++
EC50 500-100O nM = ++
EC50 1,000-10,00O nM = +
The compounds of the present invention show activity against the mutant QHGS which is resistant to many published integrase inhibitors.
Throughout this specification the word "comprise", or variations such as "comprises" or "comprising", will be understood to imply the inclusion of a stated element, integer or step, or group of elements, integers or steps, but not the exclusion of any other element, integer or step, or group of elements, integers or steps.
All publications mentioned in this specification are herein incorporated by reference. Any discussion of documents, acts, materials, devices, articles or the like which has been included in the present specification is solely for the purpose of providing a context for the present invention. It is not to be taken as an admission that any or all of these matters form part of the prior art base or were common general knowledge in the field relevant to the present invention as it existed in Australia or elsewhere before the priority date of each claim of this application.
It will be appreciated by persons skilled in the art that numerous variations and/or modifications may be made to the invention as shown in the specific embodiments without departing from the spirit or scope of the invention as broadly described. The present embodiments are, therefore, to be considered in all respects as illustrative and not restrictive.

Claims

1. A compound of Formula I or a pharmaceutically acceptable derivative, salt or prodrug thereof wherein:
Figure imgf000168_0001
Li-R] is hydrogen or is a substituent wherein
Li is selected from the group consisting of Z, Ci-3alkylene, >C=Z, -CZ2-, -C(=Z)Ci-3alkylene, -CZ2-C i-3alkylene, -Ci-3alkylene-C(=Z)-, -C].3alkylene-CZ2- wherein each Z is independently selected from O, S, and NH;
each Ri is independently selected from the group consisting of hydrogen, Ci.ioalkyl wherein one or more of the carbon atoms of the alkyl chain may optionally be replaced with oxygen atoms, Ci-IOaIlCyINR3R4, halo, NR3R4, alkylaryl, alkylheteroaryl, a 4-7 membered lactam, S(O)NR3R4, SO2NR3R4, S02Ci-ioalkyl, Cs-iocycloalkyl wherein one or more of the carbon atoms of the cycloalkyl ring are replaced with one or more oxygen atoms;
R3 and R4 are each independently selected from the group consisting of hydrogen, CMOalkyl, C3-6cycloalkyl, Ci-I0NR5R6, -(CO)(CO)NR5R6; or R3 and R4 taken together with the attached nitrogen form a 5-7 membered heterocyclic ring which contains zero to two additional heteroatoms selected from N, O or S where S can be at the S, S(O) or S(O)2 oxidation state and wherein said heterocyclic ring is optionally substituted at the carbon or nitrogen atoms with one or more substituents selected from halo, Ci^alkyl, CChCMalkyl, NRsR6; CMaIlCyINR5R6 and further wherein two carbons of said 5-7 membered heterocyclic ring may optionally be bridged by a Ci-3 alkylene bridging group;
R5 and R6 are each independently selected from the group consisting of H and Ci^alkyl or R5 and R6 together with the attached nitrogen form a
5-7 membered heterocyclic ring which contains zero to two additional heteroatoms selected from N, O or S where S can be at the S, S(O) or S(O)2 oxidation state and wherein said heterocyclic ring is optionally substituted at the carbon or nitrogen atoms with one or more substituents selected from halo and Ci^alkyl and further wherein two carbons of said
5-7 membered heterocyclic ring may optionally be bridged by a Cj-3 alkylene bridging group;
L4-Ri \ is 0-2 substituents wherein:
each L4 is independently absent or is selected from the group consisting of Z, Ci-3alkylene, >C=Z, -CZ2-, -C(=Z)d-3alkylene, -CZ2-C i.3alkylene,
-Ci-3alkylene-C(=Z)-, -Ci-3alkylene-CZ2- wherein each Z is independently selected from O, S, and NH;
each R1) is independently selected from the group consisting of hydrogen, C1-10alkyl wherein one or more of the carbon atoms of the alkyl chain may optionally be replaced with oxygen atoms, Cj-ioalkyl where one of the carbon atoms is replaced by S in the S, S(O), or S(O)2 oxidation state, Ci-1OaUCyINR3R4, halo, NR3R4, alkylaryl, S(O)NR3R4, SO2NR3R4, SO2Ci-i0alkyl, and C5-iocycloalkyl wherein one or more of the carbon atoms of the cycloalkyl ring are replaced with one or more oxygen atoms;
when Rn is alkylaryl, the aryl group of said alkylaryl substituent is optionally substituted with a substituent selected from Ci-iOalkyl, -O-Ci-ioalkyl, Ci-I Oa^yINR3R4, -O-Ci-i0alkylNR3R4, halo, NR3R4, alkylaryl, -O-alkylaryl, SO2NR3R4
Hi is a selected from the group consisting of-C(=O)NH- and a 5- or 6-membered saturated, partially saturated or aromatic ring containing between 1 and 4 heteroatoms wherein each heteroatom is independently selected from the group consisting of N, O and S; L2-R7 is 0-2 substituents wherein:
each L2 is independently absent or is group consisting of Z, Ci-3alkylene, >C=Z, -CZ2-, -C(=Z)Ci-3alkylene, -CZ2-C i-3alkylene, -C)-3alkylene-C(=Z)-, -C1-3alkylene-CZ2- wherein each Z is independently selected from O, S, and NH;
each R7 is independently selected from the group consisting of hydrogen, Ci-10alkyl wherein one or more of the carbon atoms of the alkyl chain may optionally be replaced with oxygen atoms, Ci-1OaIlCyINR3R4, halo, NR3R4, alkylaryl, S(O)NR3R4, SO2NR3R4, SO2CM0alkyl, and C5-10cycloalkyl wherein one or more of the carbon atoms of the cycloalkyl ring are replaced with one or more oxygen atoms;
X is CR8R8-
each of Rg and R8- is independently selected from the group consisting of H and CH3, preferably H;
H2 is a 5- or 6-membered saturated, partially saturated or aromatic ring containing between 0 and 4 heteroatoms independently selected from the group consisting of N, O and S;
L3-R9 is 0-3 substituents wherein:
each L3 is independently absent or is selected from the group consisting of Z, C i -3alkylene, >C=Z, -CZ2-, -C(=Z)C i -3alkylene, -CZ2-C i -3alkylene,
-C1-3alkylene-C(=Z)-, -Ci-3alkylene-CZ2- wherein each Z is independently selected from O, S, and NH;
each R9 is independently selected from the group consisting of hydrogen, Ci.ioalkyl wherein one or more of the carbon atoms of the alkyl chain may optionally be replaced with oxygen atoms, Ci-ioalkylNR3R4, halo, NR3R4, heterocyclyl, heteroaryl, alkylaryl, S(O)NR3R4, SO2NR3R4, SO2Ci-10alkyl, and C5-i0cycloalkyl wherein one or more of the carbon atoms of the cycloalkyl ring are replaced with one or more oxygen atoms.
2. A compound according to claim 1 wherein Li is CH2(C=O)- and R1 is selected from the group consisting of N-piperidine, N-piperazine, N, N'-methyl-piperazine, and morpholino wherein each R) is optionally substituted at the carbon or nitrogen atoms with one or two methyl groups.
3. A compound according to claim 1 or claim 2 wherein H1 is a five membered aromatic heterocycle selected from the group consisting of thiazole, oxazole, oxadiazole, thiadiazole, imidazole, triazole, and tetrazole.
4. A compound according to claim 3 wherein Hj is thiazole.
5. A compound according to any one of claims 1 to 4 wherein H2 is phenyl.
6. A compound according to any one of claims 1 to 5 wherein L4-Rn is one substituent wherein L4 is absent or is -CH2- and R11 is NR3R4.
7. A compound according to any one of claims 1 to 5 wherein L3-R9 is at least 2 substituents wherein the first L3-R9 is halo and in the second L3-R9> L3 is absent or is selected from >C=O and R9 is selected from the group consisting of halo, NR3R4 and SO2NR3R4.
8. A compound according to any one of claims 1 to 5 wherein L3-R9 is one substituent and is halo.
9. A compound according to any one of claims 1 to 8 wherein at least one NR3R4 is independently selected from the group consisting of morpholino, a five-membered cyclic sulphonamide (such as isothiazolidine) and a six membered cyclic sulphonamide.
10. A compound according to any one of claims 1 to 9 wherein the group
"Ci.ioalkyl where one of the carbon atoms is replaced by S in the S, S(O), or S(O)2 oxidation state" is methylsulfanylmethyl or methylsulfonylmethyl.
11. A compound according to any one of claims 1 to 10, wherein when H1 is -C(=O)NH-, then Lj-Ri is not hydrogen and L4-Rn is at least one substituent.
12. A compound according to any one of claims 1 to 11, wherein when Hi is -C(=O)NH-, then L4-Ru is a cyclic sulphonamide.
13. A compound according to claim 1 wherein the compound is selected from the group consisting of: 7-[5-(3-Chloro-4-fluoro-benzyl)- thiazol-2-yl]-6-hydroxy- 1 -(2-oxo-2- piperidin- 1 -yl-ethyl)- 1 H- imidazo[ 1 ,2-a]pyrimidin-5-one
7-[5-(3,4-Dichloro-benzyl)-thiazol- 2-yl]-6-hydroxy- 1 -(2-oxo-2- piperidin- 1 -yl-ethyl)- 1 H- imidazo[ 1 ,2-a]pyrimidin-5-one
7-[5-(4-Fluoro-2-methanesulfonyl- benzyl)-thiazol-2-yl]-6-hydroxy- 1 - (2-oxo-2-piperidin- 1 -yl-ethyl)- 1 H- imidazo[ 1 ,2-a]pyrimidin-5-one
7-{5-[4-Fluoro-2-(4-methyl- piperazine- 1 -sulfonyl)-benzyl]- thiazol-2-yl} -6-hydroxy- 1 -(2-oxo-2- piperidin- 1 -yl-ethyl)- 1 H- imidazo[ 1 ,2-a]pyrimidin-5-one
5-Fluoro-2-{2-[6-hydroxy-5-oxo-l- (2-oxo-2-piperidin- 1 -yl-ethyl)- 1,5- dihydro-imidazo[l,2-a]pyrimidin-7- yl]-thiazol-5-ylmethyl}-N,N- dimethyl-benzenesulfonamide
Figure imgf000172_0001
5-Fluoro-2-{2-[6-hydroxy-5-oxo-l- (2-0X0-2 -piperidin-l-yl-ethyl)-l, 5- dihydro-imidazo [ 1 ,2-a]pyrimidin-7- yl]-thiazol-5-ylmethyl } -N-methyl- benzamide
5-Fluoro-2-{2-[6-hydroxy-5-oxo-l- (2-oxo-2-piperidin-l -yl-ethyl)- 1,5- dihydro-imidazo[l,2-a]pyrimidin-7- yl] -thiazol-5-ylmethyl } -N5N- dimethyl-benzamide
7-{5-[4-Fluoro-2-(4-methyl- piperazine- 1 -carbonyl)-benzyl]- thiazol-2-yl } -6-hydroxy- 1 -(2-oxo-2- piperidin- 1 -yl-ethyl)- 1 H- imidazo[ 1 ,2-a]pyrimidin-5-one
7. { 5-[4-Fluoro-2-(5-methyl- 1 , 1 - dioxo- 1 lambda*6*- [l,2,5]thiadiazolidin-2-yl)-benzyl]- thiazol-2-yl}-6-hydroxy-l -(2-0X0-2- piperidin- 1 -yl-ethyl)- 1 H- imidazo[l ,2-a]pyrimidin-5-one
7-{5-[2-(l,l-Dioxo-llambda*6*- isothiazolidin-2-yl)-4-fluoro- benzyl]-thiazol-2-yl} -6-hydroxy- 1 - (2-oxo-2-piperidin- 1 -yl-ethyl)- 1 H- imidazo[l ,2-a]pyrimidin-5-one
Figure imgf000173_0001
N-(5-Fluoro-2- {2-[6-hydroxy-5- oxo- 1 -(2-oxo-2-piperidin- 1 -yl- ethyl)-l,5-dihydro-imidazo[l,2- a]pyrimidin-7-yl]-thiazol-5- ylmethyl } -phenyl)-N,N',N'- trimethyl-oxalamide
7-{5-[4-Fluoro-2-(4-methyl- piperazin- 1 -ylmethyl)-benzyl]- thiazol-2-yl} -6-hydroxy- 1 -(2-oxo-2- piperidin- 1 -yl -ethyl)- 1 H- imidazo[ 1 ,2-a]pyrimidin-5-one
7-{5-[4-Fluoro-2-(5-methyl-l,l- dioxo- 1 lambda* 6 * -
[ 1 ,2,5]thiadiazolidin-2-ylmethyl)- benzyl]-thiazol-2-yl}-6-hydroxy-l-
(2-oxo-2-piperidin- 1 -yl-ethyl)- 1 H- imidazo[ 1 ,2-a]pyrimidin-5-one
3-(l,l-Dioxo-llambda*6*- isothiazolidin-2-yl)-7-[5-(4-fluoro- benzyl)-thiazol-2-yl]-6-hydroxy- 1 - methyl- 1 H-imidazo[ 1 ,2- a] pyrimidin-5 -one
Figure imgf000174_0001
Figure imgf000175_0001
7-[5-(4-Fluoro-benzyl)-thiazol-2- yl]-6-hydroxy-l-[2-(4-methyl- piperazin- 1 -yl)-2-oxo-ethyl]- 1 H- imidazo[l ,2-a]pyrimidin-5-one
7-[5-(3-Chloro-4-fluoro-benzyl)- thiazol-2-yl]-6-hydroxy- 1 -[2-(4- methyl-piperazin- 1 -yl)-2-oxo-ethyl]- 1 H-imidazo [ 1 ,2-a]pyrimidin- 5 -one
7-[5-(3,4-Dichloro-benzyl)-thiazol- 2-yl]-6-hydroxy- 1 -[2-(4-methyl- piperazin- 1 -yl)-2-oxo-ethyl]- 1 H- imidazo[l ,2-a]pyrimidin-5-one
7-[5-(4-Fluoro-2-methanesulfonyl- benzyl)-thiazol-2-yl]-6-hydroxy- 1 - [2-(4-methyl-piperazin- 1 -yl)-2-oxo- ethyl] - 1 H-imidazo[ 1 ,2-a]pyrimidin- 5 -one
Figure imgf000176_0001
7-{5-[4-Fluoro-2-(4-methyl- piperazine- 1 -sulfonyl)-benzyl]- thiazol-2-yl } -6-hydroxy- 1 - [2-(4- methyl-piperazin- 1 -yl)-2-oxo-ethyl]- 1 H-imidazo[ 1 ,2-a]pyrimidin-5-one
5-Fluoro-2-(2-{6-hydroxy-l-[2-(4- methyl-piperazin- 1 -yl)-2-oxo-ethyl] -
5-oxo-l,5-dihydro-imidazo[l,2- a]pyrimidin-7-yl}-thiazol-5- ylmethyl)-N,N-dimethyl- benzenesulfonamide
5-Fluoro-2-(2-{6-hydroxy-l-[2-(4- methyl-piperazin- 1 -yl)-2-oxo-ethyl]- 5-oxo- 1 ,5-dihydro-imidazo[l ,2- a]pyrimidin-7-yl}-thiazol-5- ylmethyl)-N-methyl-benzamide
5-Fluoro-2-(2- {6-hydroxy- 1-[2-(4- methyl-piperazin- 1 -yl)-2-oxo-ethyl]- 5-oxo- 1 ,5-dihydro-imidazo[l ,2- a]pyrimidin-7-yl} -thiazol-5- ylmethyl)-N,N-dimethyl-benzamide
Figure imgf000177_0001
Figure imgf000178_0001
-
Figure imgf000179_0001
N-{7-[5-(4-Fluoro-benzyl)-thiazol-
2-yl]-6-hydroxy- 1 -[2-(4-methyl- piperazin- 1 -yl)-2-oxo-ethyl]-5-oxo-
1 ,5-dihydro-imidazo[l ,2- a]pyrimidin-3-yl}-N,N',N'- trimethyl-oxalamide
Figure imgf000180_0001
14. A method of treatment or prophylaxis of a viral infection in a subject comprising administering to said subject an effective amount of a compound according to any one of claims 1 to 13 or a pharmaceutically acceptable derivative, salt or prodrug thereof.
15. The use of a compound according to any one of claims 1 to 13 or a pharmaceutically acceptable derivative, salt or prodrug thereof in the preparation of a medicament for the treatment or prophylaxis of a viral infection in a subject.
16. The method according to claim 14 or the use according to claim 15 wherein the viral infection is a HIV or SIV infection.
17. The method or use according to claim 16 wherein the HIV or SIV infection comprises a viral strain resistant to other integrase inhibitors such as Isentrass (raltregavir, MK-0158) or elvitegravir.
18. The method or use according to claim 16 or claim 17 wherein the viral strain comprises HIV integrase enzyme containing the Q148H/G140S double mutation, N155H/E92Q double mutation, the F121 Y/T124K double mutation or the Q148K/G140A/E138A triple mutation.
19. A pharmaceutical composition comprising a compound according to any one of claims 1 to 13 and a pharmaceutically acceptable carrier, diluent or excipient.
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