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WO2005089110A3 - Polynucleotide synthesis - Google Patents

Polynucleotide synthesis Download PDF

Info

Publication number
WO2005089110A3
WO2005089110A3 PCT/US2005/006429 US2005006429W WO2005089110A3 WO 2005089110 A3 WO2005089110 A3 WO 2005089110A3 US 2005006429 W US2005006429 W US 2005006429W WO 2005089110 A3 WO2005089110 A3 WO 2005089110A3
Authority
WO
WIPO (PCT)
Prior art keywords
methods
improving
polynucleotide synthesis
oligonucleotides
kinetics
Prior art date
Application number
PCT/US2005/006429
Other languages
French (fr)
Other versions
WO2005089110A2 (en
Inventor
George M Church
Jingdong Tian
Original Assignee
Harvard College
George M Church
Jingdong Tian
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Harvard College, George M Church, Jingdong Tian filed Critical Harvard College
Priority to CA002558749A priority Critical patent/CA2558749A1/en
Priority to EP05756527A priority patent/EP1733055A4/en
Priority to AU2005222788A priority patent/AU2005222788A1/en
Priority to JP2007500808A priority patent/JP2007534320A/en
Publication of WO2005089110A2 publication Critical patent/WO2005089110A2/en
Publication of WO2005089110A3 publication Critical patent/WO2005089110A3/en

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
    • C12P19/00—Preparation of compounds containing saccharide radicals
    • C12P19/26—Preparation of nitrogen-containing carbohydrates
    • C12P19/28—N-glycosides
    • C12P19/30—Nucleotides
    • C12P19/34—Polynucleotides, e.g. nucleic acids, oligoribonucleotides
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1034—Isolating an individual clone by screening libraries
    • C12N15/1093—General methods of preparing gene libraries, not provided for in other subgroups
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions
    • C12Q1/6846—Common amplification features

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  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Organic Chemistry (AREA)
  • Engineering & Computer Science (AREA)
  • Genetics & Genomics (AREA)
  • Wood Science & Technology (AREA)
  • Zoology (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Microbiology (AREA)
  • Biochemistry (AREA)
  • Biophysics (AREA)
  • Biomedical Technology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Physics & Mathematics (AREA)
  • Plant Pathology (AREA)
  • Crystallography & Structural Chemistry (AREA)
  • General Chemical & Material Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Immunology (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
  • Saccharide Compounds (AREA)

Abstract

Methods of improving the kinetics of bimolecular interactions where reactants are present in low concentrations are provided. Methods of pre-amplifying one or more oligonucleotides using high concentration universal primers are provided. Methods of improving the error rate in oligonucleotide and/or polynucleotide syntheses are also provided. Methods for sequence optimization and oligonucleotides design are further provided.
PCT/US2005/006429 2004-02-27 2005-02-28 Polynucleotide synthesis WO2005089110A2 (en)

Priority Applications (4)

Application Number Priority Date Filing Date Title
CA002558749A CA2558749A1 (en) 2004-02-27 2005-02-28 Polynucleotide synthesis
EP05756527A EP1733055A4 (en) 2004-02-27 2005-02-28 Polynucleotide synthesis
AU2005222788A AU2005222788A1 (en) 2004-02-27 2005-02-28 Polynucleotide synthesis
JP2007500808A JP2007534320A (en) 2004-02-27 2005-02-28 Polynucleotide synthesis method

Applications Claiming Priority (6)

Application Number Priority Date Filing Date Title
US54863704P 2004-02-27 2004-02-27
US60/548,637 2004-02-27
US60095704P 2004-08-12 2004-08-12
US60/600,957 2004-08-12
US63667204P 2004-12-16 2004-12-16
US60/636,672 2004-12-16

Publications (2)

Publication Number Publication Date
WO2005089110A2 WO2005089110A2 (en) 2005-09-29
WO2005089110A3 true WO2005089110A3 (en) 2008-01-17

Family

ID=34994153

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2005/006429 WO2005089110A2 (en) 2004-02-27 2005-02-28 Polynucleotide synthesis

Country Status (6)

Country Link
US (1) US20060127920A1 (en)
EP (1) EP1733055A4 (en)
JP (1) JP2007534320A (en)
AU (1) AU2005222788A1 (en)
CA (1) CA2558749A1 (en)
WO (1) WO2005089110A2 (en)

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US9217144B2 (en) 2010-01-07 2015-12-22 Gen9, Inc. Assembly of high fidelity polynucleotides
US11845054B2 (en) 2010-11-12 2023-12-19 Gen9, Inc. Methods and devices for nucleic acids synthesis

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Cited By (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
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Also Published As

Publication number Publication date
EP1733055A4 (en) 2009-03-11
AU2005222788A1 (en) 2005-09-29
JP2007534320A (en) 2007-11-29
EP1733055A2 (en) 2006-12-20
US20060127920A1 (en) 2006-06-15
CA2558749A1 (en) 2005-09-29
WO2005089110A2 (en) 2005-09-29

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