8000 Code. · Issue #12 · zoecastillo/microbiomeExplorer · GitHub
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Code. #12

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senukobla opened this issue Nov 24, 2023 · 5 comments
Open

Code. #12

senukobla opened this issue Nov 24, 2023 · 5 comments

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@senukobla
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Thanks for this pipeline . I love it . 2 questions

  1. how can one retrieve the code? ( want to see code that the GUI run )
  2. It appears files of large sizes cannot be loaded ( you get and error ) . Is there a way to increase file size limit?
@zoecastillo
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You should be able to clone this repo and retrieve the code.

With regards to file size, do you have a specific error code? How are you accessing Microbiome Explorer when uploading the file, i.e. is it hosted somewhere or are you running it locally?

@senukobla
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senukobla commented Nov 27, 2023 via email

@zoecastillo
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8000 Owner

In the main page of this repository, there is a green "Code" button. This opens text you can copy to clone with git or an option to download the code in zip format. Or of course you can just browse through the repository to see the code.

I haven't encountered any issues loading larger files. There are certainly limits, but 16S data tends to not get that large. How big is the file you are trying to load and what format are you using? If the file is public data that I can access, let me know and I can take a look.

@senukobla
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senukobla commented Nov 28, 2023 via email

@zoecastillo
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Ah, I see. Yes, you can click the Report button for each analysis you would like to preserve and then go to the report section of the app. You will see the code in text boxes in case that is sufficient. Otherwise, you can then generate the report as HTML, and you will receive both an html file and a Rmarkdown document. The latter contains the R code used to run the analyses.

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