8000 Why data cannot be downloaded in Win10 system? gzip: stdin: invalid compressed data--format violated · Issue #7 · zhandong/TCGA2STAT · GitHub
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Why data cannot be downloaded in Win10 system? gzip: stdin: invalid compressed data--format violated #7

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pose-only-vision opened this issue May 10, 2020 · 1 comment
Open

Why data cannot be downloaded in Win10 system? gzip: stdin: invalid compressed data--format violated #7

pose-only-vision opened this issue May 10, 2020 · 1 comment

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@pose-only-vision
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I try to type code like this:
BRCA_data = getTCGA(disease = "BRCA", data.type = "Methylation", type = "450K", clinical = TRUE)`

The result shows that:

Methylation data will be imported! This may take some time!

gzip: stdin: invalid compressed data--format violated
/usr/bin/tar: Unexpected EOF in archive
/usr/bin/tar: Unexpected EOF in archive
/usr/bin/tar: Error is not recoverable: exiting now

I don't know why.... I have searched this error many times and read a lot of articles in google. They all tell me the file is corrupted... Wait for your answer, thank you sincerely.
@pose-only-vision pose-only-vision changed the title Is data cannot be downloaded in Win10 system? gzip: stdin: invalid compressed data--format violated Is data cannot download in Win10 system? gzip: stdin: invalid compressed data--format violated May 10, 2020
@pose-only-vision pose-only-vision changed the title Is data cannot download in Win10 system? gzip: stdin: invalid compressed data--format violated Why data cannot be downloaded in Win10 system? gzip: stdin: invalid compressed data--format violated May 10, 2020
@yingwooi
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This error is caused by failed untar. Seems like the tar function was not installed or not being recognized by R properly in your Windows 10.

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