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Commits on Jun 10, 2024

Commits on Apr 29, 2024

Merge pull request #35 from Alex-Vasile/bug-fixes
nasserma
authored
FIX: Change merge_illformed_compartments to use same criteria and selection as _merge_two_compartments
Alex-Vasile
committed
FIX: Ensure that compartments have at least 2 connections after flow thresholding is applied
Alex-Vasile
committed
FORMAT: Introduce sub-function to clean-up _merge_two_compartments
Alex-Vasile
committed
FORMAT: Minor readability cleanup
Alex-Vasile
committed
FIX: Correctly identify and merge compartments with only one neighbour
Alex-Vasile
committed
FIX: Correctly merge in connection_pairing when a compartment has a connection to a BC.
Alex-Vasile
committed
NEW: Using facet velocities instead of cell-centered velocities.
Alex-Vasile
committed
FIX: _check_flow_requirement was being passed n_vec instead of v_vec.
Alex-Vasile
committed
FIX: Check against flow threshold in connect_cstr_compartments only on final pass
Alex-Vasile
committed
NEW: Include check on absolute tolerance.
Alex-Vasile
committed
FIX: Correctly calculate # of net-outflow compartments in tweak_compartment_flows
Alex-Vasile
committed
FIX: Merging two compartments sometimes grabbed wrong ID
Alex-Vasile
committed
FIX: Correctly export compartment labels pre- and post- merging on subsequent runs.
Alex-Vasile
committed
NEW: Added check for connect_cstr_compartments to disable asserts when running during merge_compartments
Alex-Vasile
committed
FIX: Check to avoid warning about invalid values in division. There can be infinity, but they are expected because the compartment numbering can be non-sequential.
Alex-Vasile
committed

Commits on Apr 18, 2024

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