8000 Support for MaxQuant 2.4.2.0? · Issue #59 · wenbostar/PDV · GitHub
[go: up one dir, main page]
More Web Proxy on the site http://driver.im/
Skip to content

Support for MaxQuant 2.4.2.0? #59

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom
Open
rugenni opened this issue Jul 18, 2023 · 4 comments
8000 Open

Support for MaxQuant 2.4.2.0? #59

rugenni opened this issue Jul 18, 2023 · 4 comments
Labels
MaxQuant

Comments

@rugenni
Copy link
rugenni commented Jul 18, 2023

Hi all,

I guess this is not an issue but I was wondering if PDV also supports MaxQuant results from the newer versions. I have a lot of timsTOF data that work better with the newer versions of MaxQuant and would like to make some nice figures with PDV since the MaxQuant viewer still does not make picture in acceptable quality...

I now just started PDV and added my combined folder and the mqpar file and it is now at "Loading results. Please wait" for quite a while.

Could you give me a short info on that?

Many thanks,
Nils
@wenbostar
Copy link
Owner

Could you share the result with us so that we can test on our end?

@rugenni
Copy link
Author
rugenni commented Jul 19, 2023 •
edited
Loading

Hi,

thanks for the quick reply!

So I could find out that PDV easily opens older Orbitrap Runs analyzed with MaxQuant 2.0.3.0.

I made a short runs with four timsTOF files with MQ 2.4.2.0. The combined folder is around 1 GB, so I uploaded everything to our unis file exchange sever:

https://dl.uni-h.de/?t=5afd1aa67b23755c9394cb14cf6376f1

Is that fine for you?

Best,
Nils

@KaiLiCn
Copy link
Collaborator
KaiLiCn commented Jul 23, 2023

Hi Nils,

Sorry for the late reply. I can't access your link. Could you upload your files here: https://www.dropbox.com/request/zZ6ew6O79dHZEzGH1sEZ

I will test and update it in the future.

Kai

@rugenni
Copy link
Author
rugenni commented Aug 1, 2023

Hi Kai,

sorry for the late reply.

I uploaded the combined folder and the mqpar file to your dropbox.

Thanks,
Nils

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
MaxQuant
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
3 participants
@wenbostar @KaiLiCn @rugenni
0