Releases: waveygang/wfmash
wavefront inception: the trace-merging
This point release updates wflign to emit a single merged alignment for each mapping. The output is compact and ready for eventual adaptation to SAM output.
wavefront inception
wfmash is now sync'ed with edyeet and an update to wflign lets us use WFA to obtain base-level alignment with affine gap costs. This is more biologically plausible than edit-distance based alignment provided by edilb.
Alignment runtime increases by 2-3x, depending on divergence rate given by -p[%], --map-pct-id=[%], with higher thresholds experiencing lower relative slowdown.
wfmash uses both wavefronts and mash distance (locality sensitive hashing) in two contexts. For mapping, it uses MashMap2's algorithm. For base-level alignment, it uses wflign, which is WFλ with λ = WFA guided heuristically with mash distance.
starting to get useful
Other people can compile it.
And it's generally improved since v0.1.