8000 Issues downloading packages from test_env.yml · Issue #426 · volkamerlab/teachopencadd · GitHub
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cayleb247 opened this issue Oct 20, 2024 · 3 comments
Open

Issues downloading packages from test_env.yml #426

cayleb247 opened this issue Oct 20, 2024 · 3 comments
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dependency Update/fix dependencies

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@cayleb247
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Describe the bug

I am following the website's tutorial on installing all of the dependencies through mamba. However, I keep on getting errors saying that it cannot find certain libraries such as biopython<=1.77

To Reproduce

mamba env create -f https://raw.githubusercontent.com/volkamerlab/TeachOpenCADD/master/devtools/test_env.yml conda activate teachopencadd

I ran this code and got errors surrounding biopython it seems.

Expected behavior

I would expect that all of the dependencies would install through the .yml file and form its own environment.

Screenshots

Screenshot 2024-10-20 at 7 27 05 PM

Configuration (please complete the following information):

N/A (the very problem itself)

Additional context

I am running a M3 MacBook pro. I have had a similar issue with my desktop. I tried downloading only the non-problematic packages through the .yml file and downloading the rest separately, but more issues came up. I was not able to import all the packages from the notebooks.
@minwochai
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I have the same problem.

@cayleb247
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I have the same problem.

Hello! I have found the issue. Please look into installing another version of conda using the older osx-64 architecture on mac. The issue stems from the fact that many of the packages that need to be installed (such as biopython) requires an older version of conda to be installed (look at what the package is supported on on the anaconda website). Hope this helps!
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@minwochai
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I have the same problem.

Hello! I have found the issue. Please look into installing another version of conda using the older osx-64 architecture on mac. The issue stems from the fact that many of the packages that need to be installed (such as biopython) requires an older version of conda to be installed (look at what the package is supported on on the anaconda website). Hope this helps!

Thank you

@sakhawathsumit sakhawathsumit added the dependency Update/fix dependencies label Feb 23, 2025
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@sakhawathsumit @cayleb247 @minwochai
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