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phylostratigraphy

Here are 5 public repositories matching this topic...

josuebarrera / GenEra

genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.

bioinformatics genomics comparative-genomics genera phylostratigraphy gene-family gene-age founder-gene founder-events

Updated Nov 29, 2024
Shell

arendsee / phylostratr

An R framework for phylostratigraphy

bioinformatics genomics gene-annotation phylostratigraphy

Updated Dec 17, 2022
R

kullrich / orthomap

orthomap is a python package to extract orthologous maps (in other words the evolutionary age of a given orthologous group) from OrthoFinder/eggNOG results. Orthomap results (gene ages per orthogroup) can be further used to calculate weigthed expression data (transcriptome evolutionary index) from scRNA sequencing objects.

python bioinformatics evolution gene-expression transcriptome gene-expression-profiles orthofinder tai scrna-seq-analysis phylostratigraphy scanpy expression-profiles orthomap

Updated Nov 20, 2023
Python

LotharukpongJS / phylomapr

Get precomputed gene age maps (phylomaps) in R

bioinformatics phylostratigraphy genomics-data gene-age

Updated Nov 2, 2023
R

kullrich / scTEI

add any phylogenetically based transcriptome evolutionary index (TEI) to single-cell data objects

bioinformatics evolution gene-expression gene-expression-profiles orthofinder seurat scrna-seq-analysis phylostratigraphy expression-profiles seurat-objects sctei

Updated Apr 4, 2023
HTML

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