A module with convenience functions for writing Python code that interacts with OMERO.

A dataset for loading zarr files to be used in machine learning training pipelines

Medulla RMM is a radically simple IT automation and lifecycle management tool that offers the ability to handle repetitive tasks, quickly deploy applications, operating system and proactively manage them all where ever they are.

A relabeling tool for tiled segmentation with Dask

A module and scripts for working with OMERO

Tutorials for using scikit-image, written for The Jackson Laboratory

material for the "OMERO for developers" workshop.

A deep learning model for histological image compression and decompression

Tools to visualize HCS data stored in zarr files

Making it easier for users to spin up a Singularity container with image analysis tools from a slurm-based cluster

code and data for 'Intermediate Image Analysis - Images as Signals' workshop

U-Net model for glomeruli segmentation in Whole Slide Images

Saving napari ROIs into OMERO

Container for preprocessing slides using HistoQC

ROMI library controlling the PlantImager (hardware) or the VirtualPlantImager (Blender) to acquire images of (virtual) single potted plants.

Repo for generating OMERO reports/dashboards