🦀 Fqkit: A simple and cross-platform program for fastq file manipulation
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Oct 12, 2024 - Rust
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gc-content
Here are 13 public repositories matching this topic...
This project provides hands-on experience in DNA analysis using R, covering sequence manipulation, mutation analysis, GC content, fragment analysis, sequence alignment, RNA-seq, variant analysis, and phylogenetics.
phylogenetics rna-seq-analysis dna-sequences sequence-alignment mutation-analysis gc-content fragment-length
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Sep 11, 2024 - HTML
[Python] Tool for calculating GC content of nucleotide sequences with optional sliding window analysis. Sequence input options include strings and the following file formats: FASTA, FASTA Nucleid Acid, GenBank, Aligned FASTA and ClustalW.
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Aug 30, 2024 - Python
Visualize and annotate genomic coverage with ggplot2
visualization coverage ggplot2 gene track transcripts peak ideogram gc-content base-frequency genome-coverage
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May 27, 2024 - R
The Ribosome package is a Go library designed for efficient transcription and translation of DNA and RNA sequences, inspired by the real processes in living cells.
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Aug 17, 2023 - Go
a Python program to calculate GC content from fasta file
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Jan 16, 2023 - Python
Sliding window program to compute the %GC in sequence of nucleotides.
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Jan 2, 2023 - Python
HMM for annotating coding regions of DNA in S. cerevisiae chromosome III
viterbi-algorithm hmm bioinformatics computational-biology hidden-markov-model baum-welch chromosome yeast gc-content forward-algorithm genome-sequence-analysis s-cerevisiae
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Oct 16, 2022 - Jupyter Notebook
Bioinformatics library
bioinformatics clustering smith-waterman needleman-wunsch fasta transcription sequence-alignment pairwise-alignment gc-content multiple-sequence-alignment clustalw hirschberg biosequences phylogenetic-dendrograms hierarchical-cluster-analysis
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Jul 20, 2022 - Python
This is one of my first python scripts for a simple web-based tool that will generate basic biological data from the query DNA sequence.
translation dna sequence transcription gc-content melting-temperature nucleotide-sequence reverse-complement
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Mar 12, 2022 - Python
A repository for my 2020-2021 AP Research project.
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Oct 13, 2021 - Python
List of few tools to study DNA Sequences and various operations on it. This repo can be used to solve Problems of ROSALIND (Bioinformatics Stronghold Track).
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Mar 23, 2020 - CSS
Computes gc contents in prokaryotic genomes
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May 16, 2017 - C
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