FSA (Fisheries Stock Assessment) package provides R functions to conduct typical introductory fisheries analyses.

Multi-species size-based ecological modelling in R

Stochastic surplus Production model in Continuous Time

A bundle of analytics tools for fisheries scientists

This package helps fisheries scientists collect growth data from calcified structures and back-calculate estimated lengths at previous ages. The package is intended to replace much of the functionality provided by the now out-dated fishBC software.

Expanding ocean food production under climate change

Slick Decision Analysis

Catch, Length, and Specimen Data Import Program Instructions for at sea survey data for AFSC's Gulf of Alaska and Bering Sea groundfish surveys.

A package for simulating marine mammal abundance and calculating reference points.

A spatial overlay tool in R for estimating EU fisheries activities inside or outside spatial restriction areas

Bayesian Yield-Per-Recruit Model in Stan

The National Information Management Facility (NIMF) is a centralised datamart design that is used to consolidate fisheries data from various operational systems.

Computer code to accompany "An Introduction to Bayesian Modeling and Inference for Fisheries Scientists

Source code to build my dissertation using bookdown

September 2024 (appendix) and Final November SAFE report chapter for eastern Bering Sea pollock

BENTHIS WP2 Workflow revisited. Split in several parts: i) obtain a gridded swept area from interpolating bottom contacting gears tracks, and ii) obtain spatial origin of catches (landings) by dispatching landings back to interpolated VMS positions, iii) compute fuel use from VMS-derived or AIS-derived effort data and fuel use models, iv) score …

This repository supports the research "Timing and magnitude of climate driven range shifts in transboundary fish stocks challenge their management"

A spatially explicit individual-based food web model for a large ecosystem

This repository contains R code for my analysis of the genetic connectivity of Lane Snapper (Lutjanus synagris) across the Gulf of Mexico, the southeastern U.S. coast, and Belize. It includes data filtering, population structure analysis, Hardy-Weinberg equilibrium testing, and gene flow estimation, essential for fisheries management.