ImageJ functions and macros for working with thermal image files

ImageJ macros and scripts written at the imaging facility MRI

quantixed FIJI update site

ImageJ / Fiji macro to automatically export Leica LIF file as individual images (batch mode available)

an ImageJ toolset for EM image analysis

#GliaMorph - Toolkit to Process and Analyse Müller Glia Morphology

Set of ImageJ (FIJI) macros to import raw TIF images of time series Calcium imaging recordings, correct for photo-bleaching, identify regions of highest fluorescence change to assist in ROI placement, and calculate deltaF/F as a function of time for each ROI. Please cite Caccavano et. al. bioRxiv 2020.

A simple macro to analysis spheroid areas

An ImageJ macro for 2D colocalization of IHC signals in ImageJ and counting RNAscope puncta within cells.

Collection of macros for image processing in Fiji/ImageJ

Bringing the powerfull CMTK registration tool to ImageJ, multi platform, parallel automatic batch processing, neat user interface, works out of the box.

A repository containing ImageJ macros for the Snyder Lab

Stereological macros for ImageJ

MRI ImageJ related python (jython) module.

Quantifying the dynamics of long-range cell-cell mechanical communication paper code

Fiji script for automated filopodia counting from single cell images.

A simple ImageJ Fiji macro to apply maths to every nth slice in a single-channel image, e.g. average every 5 frames and similar.

Useful scripts for saving multichannel fluorescence images for use in figures and saving relevant metadata

Prairie 2-Photon Microscopy Data Manager for recursive batch processing ans analysis with Fiji