Janelia Workstation

Simulation for sensorless adaptive optics (Confocal microscopy, Modal method)

ImageJ / Fiji macro to automatically export Leica LIF file as individual images (batch mode available)

Python Server for performing biomedical images analysis

3D Analysis of confocal images of microbial biofilms/communities

Imaging experiments in Biology often involve the acquisition of confocal z-stack images to quantify fluorescent signal in a biological sample. These z-stacks are usually analyzed using open-source programs such as FIJI, which are notoriously frustrating to work with, and do not facility intuitive high-throughput analysis of many images at once. …

Data Acquisition for Confocal Microscope and Spin Control Experiments

🧪 Reproducing the concept of Confocal Laser Scanning Microscope. Using Arduino and easily found materials. Generating images in Grayscale just for fun.

A tool to accurately normalize and visualize protein distribution in 3D structures imaged with confocal microscopy using z-stacks.

Automated determination of cell membrane curvature from 3D stacks using the radius of osculating circle approach.

Analysis performed for the Belyaeva et.al PNAS 2017 Paper

Képalkotás szenzor adatokból

Analysis of actin dynamics using the method described by Higaki et al. (2009).

3D surface reconstruction from confocal microscopy stacks. This software package has been created for the anaylis of 3D vesicle shapes.

Versatile Fiji-imagej macro for 2D quantification of each marker inside your immunofluorescence staining in less of 1 minute per image. Control critical steps for segmentation.

[Pillow] Denoising Images retrieved from Confocal Calcium Imaging.

Quantification of actin dynamics using difference maps (Vidali et al, 2010, The Plant Cell)

Repository containing methods applied for the analysis of the data in the SERCA publication

Blob Inspector is a software designed to analyze blobs in biological images. It provides several common tools for computing metrics related to the blobs, such as coordinates, size, density, and distances.