8000 Theis Lab · GitHub
[go: up one dir, main page]
More Web Proxy on the site http://driver.im/
Skip to content
@theislab

Theis Lab

Institute of Computational Biology

Pinned Loading

  1. single-cell-tutorial single-cell-tutorial Public

    Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

    Jupyter Notebook 1.5k 475

  2. single-cell-best-practices single-cell-best-practices Public

    https://www.sc-best-practices.org

    Jupyter Notebook 904 214

  3. scvelo scvelo Public

    RNA Velocity generalized through dynamical modeling

    Python 442 106

  4. cellrank cellrank Public

    CellRank: dynamics from multi-view single-cell data

    Python 383 50

  5. scarches scarches Public

    Reference mapping for single-cell genomics

    Jupyter Notebook 363 59

  6. scib scib Public

    Benchmarking analysis of data integration tools

    Python 348 68

Repositories

Showing 10 of 230 repositories
  • single-cell-best-practices Public

    https://www.sc-best-practices.org

    theislab/single-cell-best-practices’s past year of commit activity
    Jupyter Notebook 904 214 69 4 Updated May 14, 2025
  • ehrdata Public

    A datastructure for EHR data

    theislab/ehrdata’s past year of commit activity
    Python 5 Apache-2.0 1 17 2 Updated May 13, 2025
  • CellFlow Public

    Modeling complex perturbations with CellFlow

    theislab/CellFlow’s past year of commit activity
    Python 34 4 43 14 Updated May 13, 2025
  • mapqc Public
    theislab/mapqc’s past year of commit activity
    Python 0 MIT 1 2 2 Updated May 13, 2025
  • ehrapy Public

    Electronic Health Record Analysis with Python.

    theislab/ehrapy’s past year of commit activity
    Python 290 Apache-2.0 24 40 1 Updated May 13, 2025
  • anndata2ri Public

    Convert between AnnData and SingleCellExperiment

    theislab/anndata2ri’s past year of commit activity
    Python 132 GPL-3.0 19 14 1 Updated May 13, 2025
  • scanpydoc Public

    Collection of Sphinx extensions similar to (but more flexible than) numpydoc

    theislab/scanpydoc’s past year of commit activity
    Python 12 GPL-3.0 6 2 0 Updated May 13, 2025
  • troutpy Public

    Package for the analysis of Transcripts outside segmented cells in ST data

    theislab/troutpy’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 0 0 1 Updated May 12, 2025
  • multigrate Public

    Multigrate: multiomic data integration for single-cell genomics

    theislab/multigrate’s past year of commit activity
    Python 24 BSD-3-Clause 7 4 2 Updated May 12, 2025
  • spatialdata-db Public
    theislab/spatialdata-db’s past year of commit activity
    Jupyter Notebook 3 BSD-3-Clause 1 25 3 Updated May 12, 2025
View all repositories

Most used topics

Loading…
0