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@soedinglab

Söding Lab

Quantitative and Computational Biology

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  1. MMseqs2 MMseqs2 Public

    MMseqs2: ultra fast and sensitive search and clustering suite

    C 1.7k 223

  2. hh-suite hh-suite Public

    Remote protein homology detection suite.

    C 570 141

  3. WIsH WIsH Public

    Predict prokaryotic host for phage metagenomic sequences

    C++ 52 10

  4. BaMMmotif2 BaMMmotif2 Public

    Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by higher-order Markov models.

    C++ 14 5

  5. spacedust spacedust Public

    Discovery of conserved gene clusters in multiple genomes

    C 79 2

  6. MMseqs2-App MMseqs2-App Public

    MMseqs2 app to run on your workstation or servers

    Vue 80 26

Repositories

Showing 10 of 55 repositories
  • MAGmax Public

    From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax

    soedinglab/MAGmax’s past year of commit activity
    Rust 0 GPL-3.0 0 0 0 Updated May 22, 2025
  • MMseqs2 Public

    MMseqs2: ultra fast and sensitive search and clustering suite

    soedinglab/MMseqs2’s past year of commit activity
    C 1,663 MIT 223 444 (2 issues need help) 12 Updated May 20, 2025
  • spacedust Public

    Discovery of conserved gene clusters in multiple genomes

    soedinglab/spacedust’s past year of commit activity
    C 79 GPL-3.0 2 6 0 Updated May 16, 2025
  • MMseqs2-Regression Public

    MMseqs2 Regression Testing

    soedinglab/MMseqs2-Regression’s past year of commit activity
    Shell 1 GPL-3.0 3 0 1 Updated May 15, 2025
  • MMseqs2-App Public

    MMseqs2 app to run on your workstation or servers

    soedinglab/MMseqs2-App’s past year of commit activity
    Vue 80 GPL-3.0 26 13 9 Updated May 10, 2025
  • PMGen Public

    peptide-MHC modeling, binding prediction, and protein design.

    soedinglab/PMGen’s past year of commit activity
    Python 3 Apache-2.0 1 0 1 Updated May 7, 2025
  • binning_benchmarking Public
    soedinglab/binning_benchmarking’s past year of commit activity
    Jupyter Notebook 4 0 0 0 Updated Mar 31, 2025
  • McDevol Public
    soedinglab/McDevol’s past year of commit activity
    Python 3 GPL-3.0 0 0 1 Updated Feb 24, 2025
  • transannot Public

    TransAnnot - a fast transcriptome annotation pipeline

    soedinglab/transannot’s past year of commit activity
    C 15 GPL-3.0 1 3 0 Updated Jan 22, 2025
  • hh-suite Public

    Remote protein homology detection suite.

    soedinglab/hh-suite’s past year of commit activity
    C 570 GPL-3.0 141 166 (1 issue needs help) 7 Updated Nov 8, 2024
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