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seung-lab

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  1. connected-components-3d connected-components-3d Public

    Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

    C++ 418 47

  2. euclidean-distance-transform-3d euclidean-distance-transform-3d Public

    Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

    C++ 251 37

  3. kimimaro kimimaro Public

    Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

    C++ 157 27

  4. cloud-volume cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    Python 154 52

  5. DracoPy DracoPy Public

    Python wrapper for Google's Draco mesh compression library.

    C++ 95 28

  6. znn-release znn-release Public archive

    Multi-core CPU implementation of deep learning for 2D and 3D sliding window convolutional networks (ConvNets).

    C++ 94 33

Repositories

Showing 10 of 184 repositories
  • neuroglancer Public Forked from google/neuroglancer

    WebGL-based viewer for volumetric data

    seung-lab/neuroglancer’s past year of commit activity
    TypeScript 23 Apache-2.0 333 91 37 Updated Jun 25, 2025
  • crackle Public

    3D dense segmentation compression codec based on crack codes.

    seung-lab/crackle’s past year of commit activity
    C++ 8 BSD-3-Clause 1 10 1 Updated Jun 25, 2025
  • ngl_bench Public

    Manipulating neuroglancer and unraveling connectomes is an agentic problem.

    seung-lab/ngl_bench’s past year of commit activity
    Python 0 0 0 0 Updated Jun 24, 2025
  • kimimaro Public

    Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

    seung-lab/kimimaro’s past year of commit activity
    C++ 157 GPL-3.0 27 16 0 Updated Jun 23, 2025
  • fastremap Public

    Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.

    seung-lab/fastremap’s past year of commit activity
    C++ 60 LGPL-3.0 7 1 0 Updated Jun 23, 2025
  • cloud-files Public

    Threaded Python and CLI client library for AWS S3, Google Cloud Storage (GCS), in-memory, and the local filesystem.

    seung-lab/cloud-files’s past year of commit activity
    Python 43 BSD-3-Clause 8 14 1 Updated Jun 23, 2025
  • connected-components-3d Public

    Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

    seung-lab/connected-components-3d’s past year of commit activity
    C++ 418 LGPL-3.0 47 13 5 Updated Jun 23, 2025
  • igneous Public

    Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.

    seung-lab/igneous’s past year of commit activity
    Python 49 GPL-3.0 22 25 5 Updated Jun 20, 2025
  • chunkflow Public

    Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation

    seung-lab/chunkflow’s past year of commit activity
    Python 54 Apache-2.0 8 14 1 Updated Jun 20, 2025
  • tile-transcoder Public

    Transfer and convert the file format of image tiles.

    seung-lab/tile-transcoder’s past year of commit activity
    Python 2 BSD-3-Clause 0 0 0 Updated Jun 18, 2025
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