8000 alignment slice positions · Issue #3203 · seqan/seqan3 · GitHub
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alignment slice positions #3203
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@notestaff

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@notestaff

Platform

  • SeqAn version: 3.3.0

Question

Is there a documented way to extract, from a pairwise alignment result, the alignment slice positions (equivalent to the coordinates[] list of BioPython alignment objects)?

From looking at the code, it seems that the trace result returned from aligned_sequence_builder() includes this info in first_sequence_slice_positions / second_sequence_slice_positions, but does not include them in the alignment result object?

Thanks for help!
@eseiler @rrahn

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