FuSViz/NAMESPACE at master · senzhaocode/FuSViz · GitHub

8000 FuSViz/NAMESPACE at master · senzhaocode/FuSViz · GitHub

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# Generated by roxygen2: do not edit by hand

export(Coordinate)

export(DuplicateTrackRemove)

export(FuSViz)

export(FuSVizOutput)

export(FuSViz_app)

export(TrackinBAM)

export(TrackinBed)

export(TrackinBedGraph)

export(TrackinBedPe)

export(TrackinSeg)

export(Trackoffline)

export(UserTracksRemove)

export(gene_trans_ex)

export(gene_trans_ex_overview)

export(gene_trans_ex_reduce)

export(get_annotation_db)

export(get_annotation_db_extend)

export(histgram_process)

export(network_process)

export(plot_arrow_overview)

export(plot_separate_domain_arrow)

export(plot_separate_domain_download)

export(plot_separate_domain_geneA)

export(plot_separate_domain_geneB)

export(plot_separate_individual)

export(plot_separate_individual_bam)

export(plot_separate_overview)

export(plot_separate_overview_download)

export(renderFuSViz)

export(wordcloud_processs)

import(grid)

import(htmlwidgets)

import(jsonlite)

importFrom(data.table,':=')

importFrom(AnnotationDbi,select)

importFrom(AnnotationDbi,loadDb)

importFrom(GenomicRanges,findOverlaps)

importFrom(GenomicRanges,makeGRangesFromDataFrame)

importFrom(GenomicRanges,union)

importFrom(GenomicRanges,GRanges)

importFrom(GenomicAlignments,coverage)

importFrom(GenomicAlignments,readGAlignmentsList)

importFrom(GenomicFeatures,exonsBy)

importFrom(Rsamtools,ScanBamParam)

importFrom(Rsamtools,scanBamFlag)

importFrom(Biostrings,stackStrings)

importFrom(Biostrings,DNAStringSet)

importFrom(IRanges,IRanges)

importFrom(IRanges,shift)

importFrom(S4Vectors,queryHits)

importFrom(S4Vectors,Rle)

importFrom(S4Vectors,subjectHits)

importFrom(Gviz,coords)

importFrom(Gviz,subset)

importFrom(Gviz,transcript)

importFrom(Gviz,"transcript<-")

importFrom(Gviz,GeneRegionTrack)

importFrom(Gviz,AnnotationTrack)

importFrom(Gviz,GenomeAxisTrack)

importFrom(Gviz,AlignmentsTrack)

importFrom(Gviz,HighlightTrack)

importFrom(Gviz,DataTrack)

importFrom(Gviz,plotTracks)

importFrom(Gviz,displayPars)

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