bowtie2 #16
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Hi Dr. Aboukhalil, Thank you for building sandbox.bio! I am trying the bowtie2 tutorial which worked around a week ago but now I don't have a path set in $REF and the aligner doesn't work: |
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Replies: 0 comments 2 replies
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Hi @paupaiz, thanks for reaching out! Have you tried refreshing the page and seeing if If not, can you try typing the command: REF=/bowtie2/example/index/lambda_virus; REF_FASTA=/bowtie2/example/reference/lambda_virus.faand seeing if it works after that? |
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It worked after typing that command! |
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Hi @paupaiz, thanks for reaching out!
Have you tried refreshing the page and seeing if
echo $REFworks?If not, can you try typing the command:
REF=/bowtie2/example/index/lambda_virus; REF_FASTA=/bowtie2/example/reference/lambda_virus.faand seeing if it works after that?