biology
The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration
Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics a…
COBRApy is a package for constraint-based modeling of metabolic networks.
Access to Biological Web Services from Python.
A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results
Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.
🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
a JavaScript DNA, RNA, and protein sequence viewer
Estimate recombination rates from population genetic data
This repository contains code for reproducing results in our paper Interpreting Potts and Transformer Protein Models Through the Lens of Simplified Attention
Blue Brain Python Optimisation Library
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
Transfer Learning with DCNNs (DenseNet, Inception V3, Inception-ResNet V2, VGG16) for skin lesions classification on HAM10000 dataset largescale data.
Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework f…