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Stars

Bioinformatics

8 repositories

The next version of bwa-mem

C++ 755 102 Updated Aug 5, 2024

🔬 Path to a free self-taught education in Bioinformatics!

6,013 984 Updated Apr 8, 2024

DuckDB Extension for reading and writing FASTA and FASTQ Files

C++ 21 4 Updated Jun 19, 2023

A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).

Python 91 31 Updated Dec 16, 2023

A parallel implementation of gzip for modern multi-processor, multi-core machines.

C 2,762 178 Updated Feb 19, 2025

Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)

C++ 47 9 Updated Mar 4, 2024

Self-contained, multi-threaded fasta/q parser

C++ 43 9 Updated Oct 3, 2024

Efficient manipulation of biological strings

R 64 17 Updated May 9, 2025
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