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Two out-of-bounds bugs in inchi interface #8129

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chbrown opened this issue Dec 20, 2024 · 0 comments · May be fixed by #8126
Open

Two out-of-bounds bugs in inchi interface #8129

chbrown opened this issue Dec 20, 2024 · 0 comments · May be fixed by #8126
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@chbrown
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chbrown commented Dec 20, 2024

Describe the bug

We (https://patents.google.com/) encountered some out of bounds bugs while converting the following SMILES strings to InChI:

  • CC[C@H]1OC(=O)C[C@@H](O)[C@H](C)[C@@H](O[C@@H]2O[C@H](C)[C@@H](O)C(N(C)C)C2O)[C@@H](CC=O)C[C@@H](C)C(=O)/C=C/C(C)=C/[C@@H]1CO.CC[C@H]1OC(=O)C[C@@H](O)[C@H](C)[C@@H](O[C@@H]2O[C@H](C)[C@@H](O[C@H]3CC(C)(O)[C@@H](O)C(C)O3)C(N(C)C)C2O)[C@@H](CC=O)C[C@@H](C)C(=O)/C=C/C(C)=C/[C@@H]1CO[C@@H]1OC(C)[C@@H](O)[C@H](OC)C1OC.[3H][Y]([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])([3H])[3H]
    => "runtime error: index 20 out of bounds for type 'AT_NUM[20]' (aka 'short[20]')"
  • Cc1cc(C)c(N2CCN(c3c(C)cc(C)cc3C)C2[Ru@OH28]2(Cl)(Cl)=Cc3cc([S@SP3](=O)(=O)N(C)C)ccc3O->2C(C)C)c(C)c1
    => "runtime error: index 4 out of bounds for type 'AT_NUM[4]' (aka 'short[4]')"
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