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Description
Currently, the repo misses documentation about the prerequisite data structure the data needs to have in order to be registered by the ETL scripts.
Idea: Provide a datatype centric description of the data-structure needed.
Bonus: List the ETL scripts that are able to deal with a specific data-structure and type.
ETL scripts to document (30):
- register-idXML-dropbox
- register-archived-ms-raw
- register-attachments-dropbox
- register-bam-dropbox
- register-chip-image
- register-convert-ms-vendor-format
- register-document-dropbox
- register-epitope-selection-dropbox
- register-fasta-dropbox
- register-fastq-dropbox
- register-fastq-dropbox-with-metadata
- register-fastqc-dropbox
- register-featureXML-dropbox
- register-hlatyping-dropbox
- register-imaging-dropbox
- register-imgag-dropbox
- register-immunomonitoring-dropbox
- register-iontorrent-data
- register-microarrays-dropbox
- register-mtb-data-dropbox
- register-mzML-dropbox
- register-nanopore-dropbox
- register-nmr-dropbox
- register-omero-metadata
- register-peptidedata-dropbox
- register-qcml-dropbox
- register-qpcr-dropbox
- register-rma-dropbox
- register-vcf-dropbox
- test-dropbox
Workflow registration scripts (20):
- register-wf-16staxonomicprofiling
- register-wf-epitopeprediction
- register-wf-hlatyping
- register-wf-individualizedproteome
- register-wf-ligandomicsid
- register-wf-ligandomicsqc
- register-wf-mapping
- register-wf-maqc
- register-wf-maxquant
- register-wf-mergenngsdata
- register-wf-msqc
- register-wf-ngsqc
- register-wf-peakpicking
- register-wf-peptideid
- register-wf-qedda
- register-wf-rnaexpressionanalysis
- register-wf-shrna
- register-wf-variantannotation
- register-wf-variantcalling
- register-wiff-dropbox
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