8000 No such file or directory · Issue #2 · philippmuench/hmmvis · GitHub
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susheelbhanu opened this issue Oct 10, 2020 · 0 comments
Open

No such file or directory #2

susheelbhanu opened this issue Oct 10, 2020 · 0 comments

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@susheelbhanu
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susheelbhanu commented Oct 10, 2020 5F5C

Hi,

Thanks for a great tool. I'm trying to use this, but keep running into the following issues:

(hmmvis) 0 [sbusi@iris-002 hmmvis](2065276 1N/1T/1CN)$ hmmvis/hmmvis --hmm example/example.hmm --fasta_dir example/faa --use_query --colorful
Traceback (most recent call last):
  File "hmmvis/hmmvis", line 8, in <module>
    from Bio import SearchIO
ImportError: No module named Bio

(hmmvis) 1 [sbusi@iris-002 hmmvis](2065276 1N/1T/1CN)$ python hmmvis/hmmvis --hmm example/example.hmm --fasta_dir example/faa --use_query --colorful
Processing file5 of group faa
Traceback (most recent call last):
  File "hmmvis/hmmvis", line 183, in <module>
    loopfiles(args, args.out + str('hits_list.csv'))
  File "hmmvis/hmmvis", line 43, in loopfiles
    runHmmer(args, list_path, filename, f)
  File "hmmvis/hmmvis", line 66, in runHmmer
    with open(hmmpath, 'rU') as input:
IOError: [Errno 2] No such file or directory: 'output/file5.fasta.out'
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