Stars
Nextflow pipeline for long amplicon typing of PacBio SMRT sequencing data
LongQC is a tool for the data quality control of the PacBio and ONT long reads.
PDF Report example with a front-page, headers and table
Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes
Streamlit — A faster way to build and share data apps.
visualize CNV data from targeted capture based sequencing data
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
R package designed to simplify structural variant analysis
VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
A Flexible Ensemble Framework for Structural Variant Analysis
a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads
This Snakemake pipeline implements the GATK best-practices workflow
Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of …
Toolset for SV simulation, comparison and filtering
Snakemake-based workflow for detecting structural variants in genomic data
Plot structural variant signals from many BAMs and CRAMs
Tools for processing and analyzing structural variants.
A structural variation pipeline for short-read sequencing
Runs a combination of tools to generate structural variant calls on whole-genome sequencing data