bfc/htab.h at master · lh3/bfc

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#ifndef BFC_HTAB_H

#define BFC_HTAB_H

#include <stdint.h>

#include "kmer.h"

#define BFC_CH_KEYBITS 50

#define BFC_CH_MAXPRE 24

struct bfc_ch_s;

typedef struct bfc_ch_s bfc_ch_t;

bfc_ch_t *bfc_ch_init(int k, int l_pre);

void bfc_ch_destroy(bfc_ch_t *ch);

int bfc_ch_insert(bfc_ch_t *ch, const uint64_t x[2], int is_high, int forced);

int bfc_ch_get(const bfc_ch_t *ch, const uint64_t x[2]);

uint64_t bfc_ch_count(const bfc_ch_t *ch);

int bfc_ch_hist(const bfc_ch_t *ch, uint64_t cnt[256], uint64_t high[64]);

int bfc_ch_dump(const bfc_ch_t *ch, const char *fn);

bfc_ch_t *bfc_ch_restore(const char *fn);

int bfc_ch_get_k(const bfc_ch_t *ch);

int bfc_ch_kmer_occ(const bfc_ch_t *ch, const bfc_kmer_t *z);

#endif

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