Description
Hello, the pipeline proceeded to the following step then got killed. Is it again a RAM problem? I tried to run it twice and for the second time the server had ~600Gb of free RAM.
2024-05-28 20:45:37 [INFO] Load 8563002 reads from file: /fast3/group_crf/home/cuirf/Camellia/Camellia_achrysantha/pecat/Camellia_achrysantha/1-correct/corrected_reads.fasta
2024-05-28 20:45:53 [INFO] Load overlap file
2024-05-28 20:56:18 [INFO] Overlap size: 2843837037/3466723677
2024-05-28 20:57:22 [INFO] Group overlaps and remove duplicated
/fast3/group_crf/home/cuirf/Camellia/Camellia_achrysantha/pecat/Camellia_achrysantha/scripts/asm1_assemble.sh: line 16: 2789903 Killed /public/software/conda_envs/pecat0.0.3/share/pecat-0.0.3-0/bin/fsa_ol_assemble /fast3/group_crf/home/cuirf/Camellia/Camellia_achrysantha/pecat/Camellia_achrysantha/2-align/overlaps.txt --thread_size=24 --output_directory=/fast3/group_crf/home/cuirf/Camellia/Camellia_achrysantha/pecat/Camellia_achrysantha/3-assemble --read_file=/fast3/group_crf/home/cuirf/Camellia/Camellia_achrysantha/pecat/Camellia_achrysantha/1-correct/corrected_reads.fasta --max_trivial_length 10000
Plgd script end: 2024-05-28 21:40:01
2024-05-28 21:40:01 [Error] Failed to run assembling overlaps, asm1