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jnarayan81 Follow

Overview Repositories 55 Projects 0 Packages 0 Stars 402

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jnarayan81

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Jitendra Narayan jnarayan81

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Within the broad domain of bioinformatics, I mainly focus on comparative genomics, genome assembly, chromosomal rearrangement/breakpoint and evolution.

38 followers · 48 following

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India
https://bioinformaticsonline.com/profile/admin

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Overview Repositories 55 Projects 0 Packages 0 Stars 402

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All HTML Python Perl Shell Jupyter Notebook R C++ Perl 6

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Polyploidism Public

Estimate the polyploidy

estimate genome polyploidy ploidy

C++ Updated Dec 1, 2018
Palindromer Public

Explore palindromes

genome repeats palindrome inverted contigs

Perl Updated Oct 26, 2018
Suddh Public

Heterozygous aware long reads corrector !

correction long reads heterozygous

Updated Aug 28, 2018
oneliners Public
Forked from stephenturner/oneliners

Useful bash one-liners for bioinformatics.

Updated Aug 14, 2018
Sanyojan Public

Sanyojan is a highly sensitive, hybrid genome assembler.

genome assembler ngs hybrid reads sanyojan

Perl 1 1 Updated Aug 9, 2018
CHASeq Public
Forked from chasewnelson/EBT

Perl scripts providing Computational Help for the Analysis of SEQuence data

Perl GNU General Public License v3.0 Updated Jul 27, 2018
BioJotter Public
Forked from vvrahul11/BioJotter

BioJotter: A tool for DNA/RNA/Protein sequence and structure analysis

Perl 1 Updated Jun 4, 2018
variant-calling-pipeline Public
Forked from gencorefacility/variant-calling-pipeline

HPC based pipelines for variant calling using GATK

Shell Updated May 22, 2018
learnPython Public

Learning Python !

Python Updated May 16, 2018
breakSniffer Public

Updated Dec 13, 2017
perl Public
Forked from bmajoros/perl

useful perl scripts and modules

Perl 1 2 GNU General Public License v2.0 Updated Dec 9, 2017
SyntenyParser Public

Parse the syntney

drawing view plot blocks hsb synteny satsuma

Perl 2 Updated Dec 3, 2017
PlayAssembly Public
Forked from jflot/PlayAssembly

Test assembly

C++ Updated Nov 26, 2017
circosExtractor Public

Extract the chromosomes of interest from noisy circos plot

plot extraction draw circos

Perl Updated Sep 26, 2017
telomeX Public

Telomere Xplorer

Perl Updated Sep 8, 2017
Pardesi Public

Exploring Horizontal gene transfer (HGT) or lateral gene transfer (LGT)

Updated May 22, 2017
loopOverSSPACE Public

Run SSPACE in loop

genome assembly loop join contigs sspace scaffoldings

Perl Updated May 10, 2017
BreaksBeat Public

Exploring breaks

evolution breakpoints chromosome breaks adaptation adineta

Perl Updated Apr 26, 2017
checkerG Public

Check the unusual breaks detail in assembled genome

genome ngs breaks

Perl Updated Apr 24, 2017
Randomness Public

Check the random occurrence in genomes

genome random randomness chromosome chitest

Perl Updated Apr 11, 2017
EBA Public

EBA: Evolutionary Breakpoints Analyser

analysis evolution classification breakpoints chromosome eba breaks

Updated Mar 13, 2017
EBA_utils Public

General EBA utilities Perl Scripts

Perl Updated Mar 9, 2017
Tetra-nucleotide-analysis Public
Forked from YunpengLiu/Tetra-nucleotide-analysis

Perl Updated Oct 17, 2016
geneticalgorithm Public
Forked from bioinformaticsreview/geneticalgorithm

Implementing Genetic Algorithm in Perl

Perl 6 GNU General Public License v3.0 Updated Jan 18, 2016
EAGLER Public
Forked from mculinovic/EAGLER

Eliminating Assembly Gaps by Long read Extension

C++ GNU General Public License v3.0 Updated Dec 9, 2015

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