8000 Cortex not outputting empty VCF when genotyped calls file is empty · Issue #25 · iqbal-lab/cortex · GitHub

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Cortex not outputting empty VCF when genotyped calls file is empty #25

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iqbal-lab opened this issue Apr 7, 2020 · 0 comments

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iqbal-lab commented

This is because of this line

cortex/scripts/calling/run_calls.pl

Line 1511 in 6d8e2f9

return 0 ;

one solution might be to simply print VCF header here

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