codepy NOT working with gcc 11.2.0 #33
Replies: 4 comments
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Your report doesn't nearly have enough information for anyone to help you.
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Sorry, I apologize I will start explaining what I was doing. I basically tried to scaffold a human genome using a tool (instaGRAAL) which requires both CUDA and PyCUDA to be installed. I did so, and after struggling a bit, I got both my However, after few moments the tool was running I faced the issue reported in this log file, stdout_codepy.log, which based on the developers of the tool is related to an incompatibility between Coming to what I'm expecting to get, I essentially should have the tool processing my scaffolds (portions of the human genome) so that they can be re-ordered according to the information about their positions generated by the tool in a former step, which didn't call for Let me know if you need any further details. |
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I'd say your main problem is Codepy seems to think that file should be in |
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Hi again, You were right! Sorry but I'm quite new to the field and couldn't figure out the issue myself... However, as per another library, I created a soft-link to the one the tool was pointing at. Now it works perfectly, thanks a lot! I think we can close this issue. |
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Hi there,
I'm struggling to make
codepyto work with the followinggcc version:Now, I really need it because it is required by a tool that performs scaffolding and leverages both GPU acceleration and PyCUDA. If it is helpful I cna report the error; however, based on what the developer for the tool said
codepyfor working needgcc vesionnot greater than 8.x.x.On the other hand, I really do not want to remove my
gcc versionsince this might cause issues with XOrg driver (which I experienced before and are rather unpleasant to deal with). I also tried to installgcc 8.5.0from shell, but unsuccessfully; later, I resorted to install it from the .bin file but even so, there is no way for me to use it in combination with the tool I need.Thus, I was wondering is there any chance I can make it work with
gcc 11.2.0Beta Was this translation helpful? Give feedback.
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