10000 Consider incorporating tools for pseudogene detection · Issue #27 · hariszaf/pema · GitHub
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Consider incorporating tools for pseudogene detection #27
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Consider incorporating tools for pseudogene detection#27
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LW low prioritypriority for the LW developersenhancementNew feature or request
@cpavloud

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@cpavloud
cpavloud
opened on Nov 26, 2021

Could be very informative especially in the case of COI samples (in general, useful for protein coding markers).
A tool that could be added are metaMATE (https://github.com/tjcreedy/metamate).
Also, this publication (https://doi.org/10.1186/s12859-021-04180-x) discusses how to remove putative pseudogenes and the method (based on the NCBI ORFfinder program) is implemented in MetaWorks (https://github.com/terrimporter/MetaWorks).

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