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Hi,
I downloaded the RDS files you provide in Baidu Netdisk.
I find that there are "GeneExpressionMatrix", "GeneScoreMatrix", "MotifMatrix", "PeakMatrix" and "TileMatrix" in ArchR_Section1.rds, but there are only "GeneScoreMatrix" and "TileMatrix" in ArchR_Section2.rds.
By the way, I couldn't find the anatomic annotation in both rds files.
Would you mind sharing a more complete dataset?
Thank you!
Best regards.
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