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05/14 Fixing small things that didn't run due to R or package updates. Please let me know if there's a better way to format issues in github, this is my first one. I also stopped through day 3 and skipped the Multispecies MSE as it's less relevant to me right now but can do that a little down the road once my single species MSEs start looking good :)
- 2.2 My first MSE practice Observe function (line 255 in /materials/exercises/day-01/my-first-mse.Rmd) needs to change from
-0.5*sigma^2to-0.5*sigma**2 - 2.2 My first MSE practice Overshooting the TAC (a change to the TAC fxn made in line 511-515 of /materials/exercises/day-01/my-first-mse.Rmd) causes issues with adding new variables to functions as using the ellipse inside a function doesn't seem to work with this version of R anymore. I made the following changes so evaluate includes overshoot as a variable and it runs fine but not sure what you wanted to do with that
- Function "evaluate" on line 283-285 changed from
# evaluate <- function(pars.iter, biomass.iter,
# control.pars, data.years, proj.years,
# iterations, ...) {
To
evaluate <- function(pars.iter, biomass.iter,
control.pars, data.years, proj.years,
iterations, overshoot, ...) {
- Line 322 changed from
catch.i[y] <- implement(TAC.i[y])tocatch.i[y] <- implement(TAC.i[y], overshoot) - Lines 411, 501 call the function evaluate. These have similar fixes and have been changed from
evaluate(pars.iter, biomass.iter, control.pars, data.years,
proj.years, niter)
To
evaluate(pars.iter, biomass.iter, control.pars, data.years,
proj.years, niter, overshoot = NA)
- 4.3 Additional Operating Model considerations Package furrr updated. line 23 in /materials/exercises/day-02/age-structure-om.Rmd needs to change from
my_future_options <- future_options()tomy_future_options <- furrr_options()
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