8000 Extend the extract_features function · Issue #10 · gusef/IrisSpatialFeatures · GitHub
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Extend the extract_features function #10

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gusef opened this issue Sep 22, 2017 · 0 comments
Open

Extend the extract_features function #10

gusef opened this issue Sep 22, 2017 · 0 comments

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@gusef
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gusef commented Sep 22, 2017

Right now extract_features gets counts, NN distances and interactions, plus ratios of all of them. In some cases though we have phenotypes splits by a surface markers. (e.g. CD3+ PD1+ and CD3+ PD1-). In these cases it would often be good too not only look at spatial features involving the two separate markers, but also the combination that is "CD3+"
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