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@BioJulia @PhyloSofS-Team

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diegozea/README.md

Hi, I'm Diego Javier Zea 👋

🧬 I'm an Associate Professor at Université Paris-Saclay, working in structural bioinformatics and molecular evolution. My research focuses on understanding proteins, particularly how they evolve, move, interact, and function while considering complex aspects such as protein disorder and alternative splicing. To accomplish this, I perform diverse protein sequence and structural analysis, integrating machine learning and statistics as needed.

👨‍💻 I am a skilled Python and Julia programmer passionate about making open-source bioinformatics tools. I am the leading developer and maintainer of:

  • 🐉 MIToS: A package for protein sequence and structure analysis in the Julia programming language.
  • ThorAxe: A Python software to assess the evolutionary conservation of alternative splicing isoforms.

📒 I also wrote the book Interactive Visualization and Plotting with Julia which shares methods and techniques for analyzing and visualizing data using the Julia language. You can find the example codes, which are explained in detail within the book, on this website and repo.

🔍 For more details about my work and projects, please visit my website

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  1. MIToS.jl MIToS.jl Public

    A Julia package to analyze protein sequences, structures, and evolutionary information

    Julia 75 18

  2. PairwiseListMatrices.jl PairwiseListMatrices.jl Public

    Symmetric matrix as a list of the values in its upper or lower triangular part. Useful for representing pairwise measures or comparisons when the used metric or distance satisfies the symmetry cond…

    Jupyter Notebook 19 8