8000 Bad `all_hits` overlap result · Issue #420 · daler/pybedtools · GitHub
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Bad all_hits overlap result #420

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limwz01 opened this issue Jan 7, 2025 · 0 comments
Open

Bad all_hits overlap result #420

limwz01 opened this issue Jan 7, 2025 · 0 comments

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@limwz01
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limwz01 commented Jan 7, 2025

Somehow, when the coordinates are big enough, all_hits produce wrong results:

bt1 = pybedtools.BedTool("chr1 50000001 50000002", from_string=True)
print(bt1.all_hits(pybedtools.Interval("chr1", 50000000, 50000001), overlap=1.0))

produces:

[Interval(chr1:50000001-50000002)]
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