8000 Cellular Genomics Informatics · GitHub
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@cellgeni

Cellular Genomics Informatics

Wellcome Sanger Institute

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  1. STARsolo STARsolo Public

    wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq

    Shell 59 7

  2. reprocess_public_10x reprocess_public_10x Public

    Scripts to help get fastqs

    Shell 14 3

  3. c2l c2l Public

    Set of scripts to run cell2location on farm

    Jupyter Notebook 2

  4. nf-cellbender nf-cellbender Public

    Nextflow implementation of Cellbender

    R

  5. sceasy sceasy Public

    A package to help convert different single-cell data formats to each other

    R 432 63

  6. schard schard Public

    reticulate-free single cell format conversion

    R 168 11

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