8000 could not load: libhts.so, but in LD_LIBRARY_PATH · Issue #1 · brentp/indelope · GitHub
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could not load: libhts.so, but in LD_LIBRARY_PATH #1
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@wdecoster

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@wdecoster

Hi,

My usual CentOS6 server has an outdated libc.so.6 so I have to use a more recent OS. Sysadmin told me this cannot be updated, unfortunately. Anyway, on the other server (CentOS7) I downloaded the binary and installed the libhts.so using conda install htslib.

Since find ~ -name libhts.so returns

/home/wdecoster/anaconda3/pkgs/htslib-1.6-0/lib/libhts.so
/home/wdecoster/anaconda3/lib/libhts.so

I changed the LD_LIBRARY_PATH to
/home/wdecoster/anaconda3/lib/:/home/wdecoster/anaconda3/pkgs/htslib-1.6-0/lib/

Yet, when executing ./indelope -h I get:

could not load: libhts.so
compile with -d:nimDebugDlOpen for more information

Did I mess up somewhere?
I can install nim and try compiling with the suggested -d:nimDebugDlOpen flag, or what do you suggest?

Installation on my Ubuntu17.10 desktop does work.

Cheers,
Wouter

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