8000 Commits · angelolab/toffy · GitHub

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Commits

Commits on May 15, 2025

ensure stitching output is float32 (#484)
camisowers
authored

Commits on Feb 22, 2025

Update artifact version to v4 (#482)
alex-l-kong
authored

Commits on Feb 21, 2025

Update README.md (#481)
ngreenwald
authored

Commits on Dec 19, 2024

Fix release environments to avoid Windows build issues with jupyter_contrib_nbextensions (#480)
alex-l-kong
authored

Commits on Dec 5, 2024

Bump `mibi-bin-tools` to `0.2.14` (#475)
alex-l-kong
authored

Commits on Dec 4, 2024

Enforce `exact_match=True` when listing JSON file for `get_estimated_time` for MPH (#467)

authored

Commits on Nov 21, 2024

Normalize by maximum pixel in case of Rosetta tiling for sparse signal (#472)

alex-l-kong
and
Alex Kong
authored
Copy full SHA for 5f16d6f

Commits on Nov 12, 2024

Add fix Noodle channel in legacy panel files defined prior to the extraction range fix PR (#470)

alex-l-kong
and
Alex Kong
authored

Commits on Jul 19, 2024

Fix Noodle extraction range in convert_panel() (#464)
camisowers
authored

Commits on Apr 10, 2024

Normalization notebook bug (#461)
camisowers
authored

Commits on Apr 5, 2024

Update 4a notebook to use new Rosetta matrix (#460)
alex-l-kong
authored

Commits on Jan 23, 2024

Adjust the batch effect QC notebook to average stats across all TMAs (#458)
camisowers
authored

Commits on Jan 10, 2024

Add support for MIBI runs acquired using autogain feature (#455)
alex-l-kong
authored

Commits on Dec 13, 2023

Commits on Nov 6, 2023

Fix normalization documentation (#454)
camisowers
authored

Commits on Oct 31, 2023

Commits on Oct 27, 2023

MIT License (#448)
srivarra
authored

Commits on Oct 24, 2023

Updated the `toffy` environment file (#434)
srivarra
authored

Commits on Oct 20, 2023

Ensure the first channel column doesn't get added when Rosetta round 2 compensation matrices are combined (#444)
alex-l-kong
authored

Commits on Oct 19, 2023

Ensure safe conversion of panel types during `modify_panel_ranges` (#443)
alex-l-kong
authored

Commits on Oct 12, 2023

Add scaling to rosetta source channel images (#440)
camisowers
authored

Commits on Oct 11, 2023

Add pre-commit to standardize toffy documentation (#437)

camisowers
and
srivarra
authored

Commits on Oct 3, 2023

Update pulse height generation to be compatible with `mibi-bin-tools==0.2.11` (#436)
alex-l-kong
authored

Commits on Oct 2, 2023

Check for all run merge conflicts (#435)
camisowers
authored

Commits on Sep 19, 2023

Commits on Sep 16, 2023

Provide more robust round 1 -> round 2 copying (#426)
alex-l-kong
authored

Commits on Sep 15, 2023

np.where returns an array inside an array, make sure to account for that (#427)
alex-l-kong
authored

Commits on Sep 14, 2023

Cite TSAI in tiling notebooks, deprecating them (#420)

alex-l-kong
and
ag-tsai
authored

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