Description
Hi ,
I am currently trying to convert an anndata file ( I got it through a processed Seurat object conversion) to a Loom file. However, I got the following error at the reading step .
Does anyone have any idea to fix it ?
AttributeError Traceback (most recent call last)
in
1 # from AnnData object
2 loom = Loom(file_path="AnndataP4.loom", title="TestP4", hierarchy=["","",""])
----> 3 loom.from_anndata(ann_data=p4adata)
4 #loomP4.from_h5ad("P4.h5ad")
~/anaconda3/lib/python3.7/site-packages/scopeloompy/init.py in from_anndata(self, ann_data)
63 self.matrix = self.matrix.tocoo()
64 self.init()
---> 65 self.finalize()
66
67 def from_h5ad(self, file_path):
~/anaconda3/lib/python3.7/site-packages/scopeloompy/init.py in finalize(self)
109 row_attrs=self.row_attrs,
110 col_attrs=self.col_attrs,
--> 111 file_attrs=self.global_attrs)
112
113 def init_meta_data_embeddings(self):
~/anaconda3/lib/python3.7/site-packages/loompy/loompy.py in create(filename, layers, row_attrs, col_attrs, file_attrs)
AttributeError: 'list' object has no attribute 'shape'